LOC110494533 (LOC106573888)


Basic Information

Item Value
gene id LOC110494533
gene name LOC106573888
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17420396 ~ 17436449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569713.2
TTTCCTGATTTAGCGTTGGAGATATCCATTGTGTAACAAACGGAACAGTGTCGCGCAGCATCCTTGAATGACACAGTTCAACATGGATCACTTCATTTTCATCTAAATTTAAACTCCAAACGGACAAAGATGGGGGAGAGTGTGGATGTTCGTGCGTTGAGGGCCAGGTTCCATGCCAAGGCTGACATGGCAGGTAGCCAAGATAGTACTTCTCCAAAATCTCCACTGCCAGGATTTGGTAGAGGAGGCCCGTTGTTGGCAGATACCGGTGTTACGGCAAATGGAGGGGTCCGACATAAACTGATGCCTATGGTTCCCACACCACCACTTTCTGGATCAAGCTCCACACCCAACCTTCAGAGACTACCACCACGACCTGTAAGGGCTGAACTGGAGGGCATATCCACCATCCCCAAGCCTCATGGTGTCTTCCCCCGCCCTCCACCATCACACCGCCCCCATGGAGCCACCAAGGAGCTGCCCcgacctctacccccaccctcagACACTGACAGGCTAGGGAAGGTGAGGGTCACAGGAGAGCGCCTGCAGAATATGATGCTAACGCACAAGGGAGTACCCACCGCCCCTTCCAAGCCAGCGCCCccctccctacccagccagaggagTCTGACGGAGGTAACCCCCCTGAGAAGGACCCTGCCCTCTGAGGGCTCCAGACCCATAAAGCCCAGACGACCCCCCCACGTCAACCTGCAGGCCCATCAGAGAAACACCAGGGCACCACACCTTGCAGGGCGCCCAGGGTTAAGGAAGACTGAAGGTGGCAGCAGTAAGTCTCTTCCAGGGATAGTCAGTCTGTCTGGCCCCTCAAGACTCCCAACCAAGCCCAGCAGCCTACCACGGCAGTGTACCCCTGTACATTCTGAGGATGACCAGGGGGAATATGATGACATAGGCCTAGGCCTAGATGTAAAACCACCTCCCCCACCCCCAAACCCAAAACACCCAGGGAGCTGGGACAAAAGTGACTCCTGGAATGAAAATAGTTCTTCACAAATAGATAAGGGGAGCGATGAAAGTGAGGTCTATGATATGATTGATAAAGGCAACCAAGAGGAGGTGAAAACCACAAGTTCTGATAAGAATAAACAGAAAGAGTTGAGCCGGCAgaaggagcaggagaggagagagcaaaaGGAAATACTGGAAAGGGAAAACAAATACAGAAAGAAATTCAAGCTGGGGACTGGGGACATAGAGGTCCTTCACATGGCCAGGGTTCGACATGACTGGCAGGGGGGCAAGCAGGATCTAACTGTTCGGCAGGGAGACAGTGTGGAGATCTTACGGGTTGAGAACAATCCTGGGGGCATGTGGCTAGCCCGCACACAGACTGGCACCTATGGCTACATCATTAACACATGTATGGATGTGGACTATGAGGAAGTGAAACGTAAACTCAAACTGTCCAGAGCCCCTGACCCCtcactgccaccaccaccacctccacctcccgtCTCTTTTGAGGACAATGACATTTATTATGATGTCGACTCCTCAAATAACATGAACAGCAGCATGACTCAAGAGGAGGatgACTACGATGATGTGCAAGGAATAAACAATGACTTCCCCCTTCCACCTCCTGAAATAAGTCTACATCCAAAAATGAGCAAGAAACTGGAGAAAGATGAACAAGAGTTCAGAAAAAAATTCAAGTTTGAGGGACCGATTAAGGTGTTACACTGCATGATGGTTGACACAAGCATCAAGAAGGCAGGAGGGAAGGATCTAGCTGTGGTTCAAGGAGAGATCCTGGAGATAATTCAACTCACTAGTGGCAAGAAAGCCCTGTGTCGCAACGAGCAGGGGAAATATGGATATGTGCCCAGGGTTGTTCTTCTTCAGGCGGAAGGGGAGGATGTTTACGACGATGTTGATCATATTAACGATATCTATGACAATGACAATGTCTATGATCATACAATCCACTGAAACCTTTTTCCTTTCCTGACCAACATGGATCACCAATCCTGGACTGACAATTTAATGCTTGTCTtccagggacacacacacacacacacacaca
>XM_021569798.2
TTTCCTGATTTAGCGTTGGAGATATCCATTGTGTAACAAACGGAACAGTGTCGCGCAGCATCCTTGAATGACACAGTTCAACATGGATCACTTCATTTTCATCTAAATTTAAACTCCAAACGGACAAAGATGGGGGAGAGTGTGGATGTTCGTGCGTTGAGGGCCAGGTTCCATGCCAAGGCTGACATGGCAGGTAGCCAAGATAGTACTTCTCCAAAATCTCCACTGCCAGGATTTGGTAGAGGAGGCCCGTTGTTGGCAGATACCGGTGTTACGGCAAATGGAGGGGTCCGACATAAACTGATGCCTATGGTTCCCACACCACCACTTTCTGGATCAAGCTCCACACCCAACCTTCAGAGACTACCACCACGACCTGTAAGGGCTGAACTGGAGGGCATATCCACCATCCCCAAGCCTCATGGTGTCTTCCCCCGCCCTCCACCATCACACCGCCCCCATGGAGCCACCAAGGAGCTGCCCcgacctctacccccaccctcagACACTGACAGGCTAGGGAAGGTGAGGGTCACAGGAGAGCGCCTGCAGAATATGATGCTAACGCACAAGGGAGTACCCACCGCCCCTTCCAAGCCAGCGCCCccctccctacccagccagaggagTCTGACGGAGGTAACCCCCCTGAGAAGGACCCTGCCCTCTGAGGGCTCCAGACCCATAAAGCCCAGACGACCCCCCCACGTCAACCTGCAGGCCCATCAGAGAAACACCAGGGCACCACACCTTGCAGGGCGCCCAGGGTTAAGGAAGACTGAAGGTGGCAGCAGTAAGTCTCTTCCAGGGATAGTCAGTCTGTCTGGCCCCTCAAGACTCCCAACCAAGCCCAGCAGCCTACCACGGCAGTGTACCCCTGTACATTCTGAGGATGACCAGGGGGAATATGATGACATAGGCCTAGGCCTAGATGTAAAACCACCTCCCCCACCCCCAAACCCAAAACACCCAGGGAGCTGGGACAAAAGTGACTCCTGGAATGAAAATAGTTCTTCACAAATAGATAAGGGGAGCGATGAAAGTGAGGTCTATGATATGATTGATAAAGGCAACCAAGAGGAGGTGAAAACCACAAGTTCTGATAAGAATAAACAGAAAGAGTTGAGCCGGCAgaaggagcaggagaggagagagcaaaaGGAAATACTGGAAAGGGAAAACAAATACAGAAAGAAATTCAAGCTGGGGACTGGGGACATAGAGGTCCTTCACATGGCCAGGGTTCGACATGACTGGCAGGGGGGCAAGCAGGATCTAACTGTTCGGCAGGGAGACAGTGTGGAGATCTTACGGGTTGAGAACAATCCTGGGGGCATGTGGCTAGCCCGCACACAGACTGGCACCTATGGCTACATCATTAACACATGTATGGATGTGGACTATGAGGAAGTGAAACGTAAACTCAAACTGTCCAGAGCCCCTGACCCCtcactgccaccaccaccacctccacctcccgtCTCTTTTGAGGACAATGACATTTATTATGATGTCGACTCCTCAAATAACATGAACAGCATGACTCAAGAGGAGGatgACTACGATGATGTGCAAGGAATAAACAATGACTTCCCCCTTCCACCTCCTGAAATAAGTCTACATCCAAAAATGAGCAAGAAACTGGAGAAAGATGAACAAGAGTTCAGAAAAAAATTCAAGTTTGAGGGACCGATTAAGGTGTTACACTGCATGATGGTTGACACAAGCATCAAGAAGGCAGGAGGGAAGGATCTAGCTGTGGTTCAAGGAGAGATCCTGGAGATAATTCAACTCACTAGTGGCAAGAAAGCCCTGTGTCGCAACGAGCAGGGGAAATATGGATATGTGCCCAGGGTTGTTCTTCTTCAGGCGGAAGGGGAGGATGTTTACGACGATGTTGATCATATTAACGATATCTATGACAATGACAATGTCTATGATCATACAATCCACTGAAACCTTTTTCCTTTCCTGACCAACATGGATCACCAATCCTGGACTGACAATTTAATGCTTGTCTtccagggacacacacacacacacacacaca

Function

NR:

description
FYN-binding protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569713.2 False 2053 mRNA 0.51 16 17420396 17436449
XM_021569798.2 True 2050 mRNA 0.51 16 17420396 17436449

Neighbor

gene id symbol gene type direction distance location
slc35e1 LOC106573890 coding upstream 35988 17367049 ~ 17384408 (+)
LOC110494277 LOC106573893 coding upstream 63417 17348448 ~ 17356979 (+)
smim7 LOC106573893 coding upstream 72526 17344382 ~ 17347870 (+)
LOC110494078 LOC106573895 coding upstream 106470 17273600 ~ 17313926 (+)
klhl26 LOC106573902 coding upstream 148346 17263953 ~ 17272050 (+)
pex11g pex11g coding downstream 340 17436789 ~ 17439767 (+)
si:ch73-40i7.5 apba1 coding downstream 5881 17442330 ~ 17456277 (+)
zgc:172302 LOC106573884 coding downstream 31209 17467658 ~ 17516649 (+)
r3hdm4 r3hdm4 coding downstream 82135 17518584 ~ 17525429 (+)
LOC110495217 LOC106573880 coding downstream 90354 17526803 ~ 17591008 (+)
G15946 NA non-coding upstream 54773 17365338 ~ 17365623 (+)
G15944 NA non-coding upstream 57968 17362211 ~ 17362428 (+)
G15943 LOC106581475 non-coding upstream 58986 17361082 ~ 17361410 (+)
G15942 NA non-coding upstream 60290 17359169 ~ 17360106 (+)
G15909 NA non-coding upstream 62343 17357701 ~ 17358053 (+)
G16259 NA non-coding downstream 4728 17441177 ~ 17441511 (+)
G16281 NA non-coding downstream 29733 17466182 ~ 17466653 (+)
G16294 NA non-coding downstream 47829 17484278 ~ 17504919 (+)
G16365 NA non-coding downstream 175815 17612264 ~ 17612604 (+)
G16368 NA non-coding downstream 179888 17616337 ~ 17616569 (+)
LOC110492876 LOC106613263 other upstream 452606 16962997 ~ 16967790 (+)
LOC110492606 LOC106573909 other upstream 499987 16916482 ~ 16920945 (+)
LOC118941201 NA other upstream 839514 16578956 ~ 16592967 (+)
LOC110490510 LOC106573976 other upstream 1704714 15694810 ~ 15716774 (+)
sass6 sass6 other upstream 1952408 15447458 ~ 15468011 (+)
LOC110495874 LOC106573877 other downstream 217758 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 539515 17975918 ~ 17991176 (+)
G17420 NA other downstream 1446274 18882723 ~ 18956208 (+)
G18481 NA other downstream 2128400 19564849 ~ 19565221 (+)
LOC110502506 LOC106573550 other downstream 2132336 19568684 ~ 19575028 (+)

Expression


Co-expression Network