Gene
RNA
| Item | Value |
|---|---|
| gene id | slc5a5 |
| gene name | slc5a5 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 17914509 ~ 17943499 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| slc5a5 | Enables sodium:iodide symporter activity. Predicted to be involved in iodide transmembrane transport and sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in thyroid follicle and thyroid primordium. Human ortholog(s) of this gene implicated in congenital hypothyroidism and thyroid dyshormonogenesis 1. Orthologous to human SLC5A5 (solute carrier family 5 member 5). |
| description |
|---|
| sodium/iodide cotransporter isoform X1 |
| id | description |
|---|---|
| K14385 | SLC5A5, NIS; solute carrier family 5 (sodium/iodide cotransporter), member 5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036958559.1 | False | 1813 | mRNA | 0.49 | 14 | 17914509 | 17943499 |
| XM_021573060.2 | False | 2229 | mRNA | 0.50 | 15 | 17914519 | 17943499 |
| XM_021573106.2 | True | 2191 | mRNA | 0.50 | 15 | 17932851 | 17943499 |
17,896,000
17,900,000
17,904,000
17,908,000
17,912,000
17,916,000
17,920,000
17,924,000
17,928,000
17,932,000
17,936,000
17,940,000
17,944,000
17,948,000
17,952,000
17,956,000
NC_048565.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110496754 | b3gnt3 | coding | upstream | 54351 | 17856865 ~ 17860158 (+) |
| LOC118966550 | NA | coding | upstream | 58491 | 17842536 ~ 17856018 (+) |
| LOC118942967 | LOC106573872 | coding | upstream | 77570 | 17834974 ~ 17836939 (+) |
| LOC110496410 | LOC106573873 | coding | upstream | 113794 | 17796045 ~ 17800715 (+) |
| LOC110496290 | LOC106573874 | coding | upstream | 133434 | 17744192 ~ 17781075 (+) |
| ccdc124 | cc124 | coding | downstream | 32419 | 17975918 ~ 17991176 (+) |
| kcnn1b | kcnn1 | coding | downstream | 49548 | 17993047 ~ 18002431 (+) |
| LOC118943582 | NA | coding | downstream | 132478 | 18075977 ~ 18096407 (+) |
| LOC110497621 | LOC106573864 | coding | downstream | 163323 | 18106822 ~ 18108826 (+) |
| LOC110497920 | LOC106573861 | coding | downstream | 439869 | 18383368 ~ 18391532 (+) |
| G16417 | NA | non-coding | upstream | 41384 | 17871050 ~ 17873125 (+) |
| G16440 | NA | non-coding | upstream | 99059 | 17815177 ~ 17815450 (+) |
| G16437 | NA | non-coding | upstream | 105689 | 17808586 ~ 17808820 (+) |
| G16436 | NA | non-coding | upstream | 105962 | 17808277 ~ 17808547 (+) |
| G16435 | NA | non-coding | upstream | 106627 | 17807662 ~ 17807882 (+) |
| G16825 | NA | non-coding | downstream | 14899 | 17958398 ~ 17958622 (+) |
| G16809 | NA | non-coding | downstream | 30631 | 17974130 ~ 17974919 (+) |
| G16810 | NA | non-coding | downstream | 61779 | 18005278 ~ 18007518 (+) |
| G16811 | NA | non-coding | downstream | 65481 | 18008980 ~ 18011312 (+) |
| LOC110495874 | LOC106573877 | other | upstream | 249501 | 17654164 ~ 17673094 (+) |
| LOC110492876 | LOC106613263 | other | upstream | 946719 | 16962997 ~ 16967790 (+) |
| LOC110492606 | LOC106573909 | other | upstream | 994100 | 16916482 ~ 16920945 (+) |
| LOC118941201 | NA | other | upstream | 1333627 | 16578956 ~ 16592967 (+) |
| LOC110490510 | LOC106573976 | other | upstream | 2198827 | 15694810 ~ 15716774 (+) |
| G17420 | NA | other | downstream | 939224 | 18882723 ~ 18956208 (+) |
| G18481 | NA | other | downstream | 1621350 | 19564849 ~ 19565221 (+) |
| LOC110502506 | LOC106573550 | other | downstream | 1625286 | 19568684 ~ 19575028 (+) |
| LOC110503939 | LOC106573564 | other | downstream | 1920292 | 19863734 ~ 19865619 (+) |
