ccdc124 (cc124)


Basic Information

Item Value
gene id ccdc124
gene name cc124
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17975918 ~ 17991176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573446.2
TTAATCAAGCCATTTCGTTCTGCACGTCATCACGGTGCGTCGTCACGAAAGGGTTATTTCATAGCTTAATGGTCTGACACTCAGATGCCTTTTTCGAAACAACATCTGTCGCTCAGCTGAAGAGTAGGCCTAGTGTTAGGAATGCCGAAGAAGTTCCAGGGCGAGAACTCCAAGGCGATGACTGCCAAGGCCCGCAAGGCAGAGGCCAAAGCTGTGGAAGACTCCCGCAAGAAGAAGGAGCTGGAGGATGCTTTATGGCAGGAGAACGATAAACATGTCCTGAAGAAAGAACAGAGGAAGGACGACAAGGAGAAGAAGCGCCTTGAGGCcctggagagaaagaaggagaaccAGCGGCTCTTGGATGAGGAGGCTGCAAAGATTAAGGGCAAGGCCAAGGAGGCGGCTGCTGCTGTGGCGGCGTGCAAAGTGACCCGGGCCCAGATTGAGGAGACGCTGCGTATTGAGCAGGCGTTACCGCAGGAGCAACCCAAAGAGAAAGAGAAGAGTCAACTGGAGTCACCCCTGGAAGAGAATGTGAATCGCCTCATCCCTGAGGAAGGTGCAGGGGACGCTAGATCCATAGAGGATGCCATTGCTGTGCTCAGCACGGCTGAAGAGCTCGACCGCCACCCCGAGCGCAGGGTGAAGGCAGCGTTCGCCGCGTACGAGGAACTGAACATGCCCCTCCTTAAAAAAGAGAACCCCAACATGCGGCTGTCGCAGCTCAAGCAGCAACTGAAAAAGGAGTGGATGAAGTCGCCAGAGAACCCCCTGAACCAGCGCTTTGCCAACTACAATGCCAAGTGAACCAACTCCAGCAGCAGCTGACACAAAACTGTTACCTATACATATTGGACCTTACAATGGAAGATGCCTCCAACCTAGAATTATTCCCCCATTATGAATACGTTGCTGGAAAAGCTGCACTCATTCCCTAGGAAGGACCTCTGATGCAAGGAATCACCTTGGGACTTCAGCTTGTTTCATTTAGAGGAGAAGCAAATTTCCCCCATTTTCCTGAGGATTTTTCTGTTACTGTGAATTCCCACTTGTGAAGCATCTCAGTGGTTTATGGATTTTATTCCCATGATCAGTTTTTGGCACTTAAATtgaaaacggggggggggggtgtgacagAAGTTTGAGATTAAAAGTAATTTATTACAGTTCACAATACTAGCATCTAATTGTTTCTGAGAGTGAGACTACAGGTATGTCGCtgtataagagcgtctgctaaatgactaaaatgtggtCTGCACTCTTGCTATAGTAACCACCTCCTTTTAAAGGCCCAATGGAGTTGTTTTATAGAAATATGACAATTCTGGGttacaattaagtaccttactgtactaGTTTTCCATTAAAATTGTAAATTATGTTTAGCAAAATTCTCAGACTTTTcataggactgtctgggagtggtctgagtggggaggggaaaactcaAAACTAGCTGTCTggaactctttgttattggtctaatTTACGGCCTGGTGATGACCCAGGCAAGCTGAAAATCCctcccatgcaaacctgctgctTTTAGATGGtcttgtgtatattgtattttcaaccagcaattatCAGGAAATTACTTATGAAATGTTTAatacttttacagtgttagtttcatcagctgttgtacaatatgatatgaAACATACAAAATGAGTtgtctgcactgggcctttaacccTTAATGATGATAATGACCCACAAAAGAAAATATCATGACCAGAGCCAGCTGTGGACTTATAAGAGCACTGCCTTGTCATAAACTGATATTTTCAGCACCATTGGAAATGACTACCCCTTTACCTATGATAAAGTGTCTTGTTGCACCTGTT
>TU19715
GAAAGGGTTATTTCATAGCTTAATGGTCTGACACTCAGATGCCTTTTTCGAAACAACATCTGTCGCTCAGGACGACAAGGAGAAGAAGCGCCTTGAGGCcctggagagaaagaaggagaaccAGCGGCTCTTGGATGAGGAGGCTGCAAAGATTAAGGGCAAGGCCAAGGAGGCGGCTGCTGCTGTGGCGGCGTGCAAAGTGACCCGGGCCCAGATTGAGGAGACGCTGCGTATTGAGCAGGCGTTACCGCAGGAGCAACCCAAAGAGAAAGAGAAGAGTCAACTGGAGTCACCCCTGGAAGAGAATGTGAATCGCCTCATCCCTGAGGAAGGTGCAGGGGACGCTAGATCCATAGAGGATGCCATTGCTGTGCTCAGCACGGCTGAAGAGCTCGACCGCCACCCCGAGCGCAGGGTGAAGGCAGCGTTCGCCGCGTACGAGGAACTGAACATGCCCCTCCTTAAAAAAGAGAACCCCAACATGCGGCTGTCGCAGCTCAAGCAGCAACTGAAAAAGGAGTGGATGAAGTCGCCAGAGAACCCCCTGAACCAGCGCTTTGCCAACTACAATGCCAAGTGAACCAACTCCAGCAGCAGCTGACACAAAACTGTTACCTATACATATTGGACCTTACAATGGAAGATGCCTCCAACCTAGAATTATTCCCCCATTATGAATACGTTGCTGGAAAAGCTGCACTCATTCCCTAGGAAGGACCTCTGATGCAAGGAATCACCTTGGGACTTCAGCTTGTTTCATTTAGAGGAGAAGCAAATTTCCCCCATTTTCCTGAGGATTTTTCTGTTACTGTGAATTCCCACTTGTGAAGCATCTCAGTGGTTTATGGATTTTATTCCCATGATCAGTTTTTGGCACTTAAATtgaaaacggggggggggggtgtgacagAAGTTTGAGATTAAAAGTAATTTATTACAGTTCACAATACTAGCATCTAATTGTTTCTGAGAGTGAGACTACAGGTATGTCGCtgtataagagcgtctgctaaatgactaaaatgtggtCTGCACTCTTGCTATAGTAACCACCTCCTTTTAAAGGCCCAATGGAGTTGTTTTATAGAAATATGACAATTCTGGGttacaattaagtaccttactgtactaGTTTTCCATTAAAATTGTAAATTATGTTTAGCAAAATTCTCAGACTTTTcataggactgtctgggagtggtctgagtggggaggggaaaactcaAAACTAGCTGTCTggaactctttgttattggtctaatTTACGGCCTGGTGATGACCCAGGCAAGCTGAAAATCCctcccatgcaaacctgctgctTTTAGATGGtcttgtgtatattgtattttcaaccagcaattatCAGGAAATTACTTATGAAATGTTTAatacttttacagtgttagtttcatcagctgttgtacaatatgatatgaAACATACAAAATGAGTtgtctgcactgggcctttaacccTTAATGATGATAATGACCCACAAAAGAAAATATCATGACCAGAGCCAGCTGTGGACTTATAAGAGCACTGCCTTGTCATAAACTGATATTTTCAGCACCATTGGAAATGACTACCCCTTTACCTATGATAAAGTGTCTTGTTGCACCTGTTCCCCATCCTAACAGGGCCTTATTAGGTGTACCTAGGGTTGCAAAGAGTCGGAAACTTTCTGGTAAATTTCCATGGGAAGTTACAGTAAGCCTGGGAATGTAGGGAATttagcttaaattcatcaaaaaagtttgCTTAttacagtgaaccttttttttgtgggatacacaaggcaattctaggtcttgtggcatattttggttgaaCTATCCCCAAATCagtggaattgcaaccctctgcatgcacagtgaatTCTTCCATCaaatgtgcagtgcactctttcatcacatgtacagctgattctctaGCTCTTGCACACTGAGATGCTATTAAGCCCAcattactacactgtctgagccaaggactacatgctttctgttAAGTTTTGAtcacaatactgggtg
>TU19716
GAAAGGGTTATTTCATAGCTTAATGGTCTGACACTCAGATGCCTTTTTCGAAACAACATCTGTCGCTCAGgaaaatgccacgggcactatctgatgtgtgaagacatttcactgcagctaatgtaaaaggaaaagctgtgtacattttgcaaatactgtgccaaatcatatgtgaagaatgcaacaaagatgcagaatctggtcaagtgcataaagttccctcagcgctcacaacaagcaacctctgacaaaagtccctcaacttctattcgagTATTccacaagagcacagacacaagggacaacagacgcacctgtctctacattgcagatgagctgaaggcagtcatcaatgaccttgaaccacagaaggtatttgcacaggtgacagacaatgctgtgaacatgaaggctgcttggtctaaagtggaggagtcctaccctcacaccacacccattggctgttctgctgacaggtgtgacatatcaagaagatgattaagcagcatgatcattaacAGTGCAGataatttggcagtacaACCACAGactaaccacgccagcccaggacctccacatctggcctcttcacctgcaggatcttcTTAGACAAGACACCCGGACAGCCAATGAAACTGAGGATTagttctgtctgtaatatagccATTTAGTcagaaaaaaataattctgattggctgggtctggcacccatggctgtgcaccttcccagtcatgtgaaatccatagattagagcctaatgaatttatttaaattgactgatttccttatatgaactgtaactcagtgaaattgttgtatgttgtttttatatttttattcagcaTAGTTAATGAATTGCTATCTAGAAGACATCAATGTTATAAATCTAATGTTGTACCGGCTGTTCGCGCTGTGGcggatgaatcagaattagttgggtaacatagataattaaGATGTTTTAGTTTCATAATATGCTTATGTGAGAAACTTGTCATTAGAATGCATCCCTTTGGACTCTagtgttggcagttgcactttTCCCTCATCTAGGGCtcagtcacttggggcccagagagggtagaggtcagaatggaacattgtcttcatatgtgaatgtgtctacctattcttaaaccatgtgaagggatggcgtgattaatggggaaccaattacttgtctccacaatgtctgtgcgcATGTCACTCCCCccagtgagcttgtccaggagtgggGTCAAGAGGGGGTttacttgagatgggagtatctagagttgacaattgatatatgccattggatgagttgCTGTTTTTGtactatgaagtaccaggaacaagattagaacctcgtcttagggaccaaactgaacgataatttatagcgaatgctatctggctatgggatactcctctctcaagtaaaagtcCTTCTTTGTGAACAGTTCCTAAAtatctgtggtttgtcatgtcaaaggggggtggatctttgctaaaAAAAAGATTTCAGTAGCCATTGTGTTGACACTCAACGGTTCATTAGAAATGGCGAATCGTTGAAAGTCAAGTGCTAATGCAAAGCTCTTATTATTAAAgatgtagtttaagt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573446.2 False 1856 mRNA 0.46 5 17975918 17988429
TU19715 False 2030 lncRNA 0.41 4 17975964 17988833
TU19716 True 1607 TUCP 0.50 5 17975964 17991176

Neighbor

gene id symbol gene type direction distance location
slc5a5 slc5a5 coding upstream 32419 17914509 ~ 17943499 (+)
LOC110496754 b3gnt3 coding upstream 115760 17856865 ~ 17860158 (+)
LOC118966550 NA coding upstream 119900 17842536 ~ 17856018 (+)
LOC118942967 LOC106573872 coding upstream 138979 17834974 ~ 17836939 (+)
LOC110496410 LOC106573873 coding upstream 175203 17796045 ~ 17800715 (+)
kcnn1b kcnn1 coding downstream 4618 17993047 ~ 18002431 (+)
LOC118943582 NA coding downstream 87548 18075977 ~ 18096407 (+)
LOC110497621 LOC106573864 coding downstream 118393 18106822 ~ 18108826 (+)
LOC110497920 LOC106573861 coding downstream 394939 18383368 ~ 18391532 (+)
LOC110498361 LOC106573862 coding downstream 474578 18463007 ~ 18471679 (+)
G16809 NA non-coding upstream 999 17974130 ~ 17974919 (+)
G16825 NA non-coding upstream 17296 17958398 ~ 17958622 (+)
G16510 LOC100194703 non-coding upstream 45334 17930238 ~ 17930584 (+)
G16505 NA non-coding upstream 50478 17924985 ~ 17925440 (+)
G16503 NA non-coding upstream 52462 17923201 ~ 17923456 (+)
G16810 NA non-coding downstream 16849 18005278 ~ 18007518 (+)
G16811 NA non-coding downstream 20551 18008980 ~ 18011312 (+)
G16933 NA non-coding downstream 81009 18069438 ~ 18069653 (+)
G16946 LOC106573866 non-coding downstream 106236 18094665 ~ 18095197 (+)
G16962 NA non-coding downstream 132927 18121356 ~ 18121672 (+)
LOC110495874 LOC106573877 other upstream 310910 17654164 ~ 17673094 (+)
LOC110492876 LOC106613263 other upstream 1008128 16962997 ~ 16967790 (+)
LOC110492606 LOC106573909 other upstream 1055509 16916482 ~ 16920945 (+)
LOC118941201 NA other upstream 1395036 16578956 ~ 16592967 (+)
LOC110490510 LOC106573976 other upstream 2260236 15694810 ~ 15716774 (+)
G17420 NA other downstream 894294 18882723 ~ 18956208 (+)
G18481 NA other downstream 1576420 19564849 ~ 19565221 (+)
LOC110502506 LOC106573550 other downstream 1580356 19568684 ~ 19575028 (+)
LOC110503939 LOC106573564 other downstream 1875362 19863734 ~ 19865619 (+)
G19083 NA other downstream 1927157 19915586 ~ 19915832 (+)

Expression


Co-expression Network