xxylt1 (LOC106573863)


Basic Information

Item Value
gene id xxylt1
gene name LOC106573863
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 18310688 ~ 18383077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574921.2
ATTTAAACGTCATCACCGGAAGTGGCATTTAGATTAGTGTGACAAGCTAGCTACAAAACATCTTATCTATAGTCTGAATACCAATGTTATGCAAATGTTTATTTCTATTTCAAGTTGACAAGCAATATAGTCATCAGGGGAATAATTTGCGGTCCTCGCGGTGTTCGTGACATGTATTTTGTCTGTACAAACCTGTTGCTTCCAAAATGTGCATCTTTAACAGAGCTAGTGTTAGCTAGCTTGATAATACTGTACCACAGAACAATGAGGTTAAGTTATGCACATCTTTGACTGTACTGTCGTTGGTACCAGTCTGCCTGCTCCAACTCAGCTGTCACAACTGTCTCTGTATCGAGTTCTCCAACACCAACATGGAAAAGGACTTCTCAACCTTGTCAGGGTGTGGACAAGACTAGTAAATTATTCTCAAACCAACACTGCGCAATAAGGATCCAGCATGTTAAACTCAGGGTTCATCCCAATATTTTTCAAGCTGAGACAATAACAGCACTTCTGCATTCATCTGTGGGAGTCACAGCATGGGTATCCTGAGGGTTCTAGTCAACACTATGGGTAGAGTCAGCACCTTCAGGTCCTATCAGTTTGTCCTCCTCCTCACGGCTGCACTGGCCGTTGTAGCCTTCTATTTCTTTGGCTCAGAGAGGCATGATTTCTCCAGCACCACCAAGCGCATCAAGCAGACCCAGGCCAGCCACAACACCAACCGGAACGACGCAGACCTTTCCCTGGACACCAGGCTGGTGCACCCTGAGGGAGGAGagttggagagggatggagaggagggtgaAGTCAGGGCCAGGAGGGCAGACAGTGGGCATGAGGTCAGCCAGTACTACCATGCCCTCATGATGTTCACGAAGGTGGACAAGAGCCGAAGCCTGCAGGAGAAGTTCCGGGTGGCCATGTTATCCATGGCGAAATACAGCCTCTTCCTGGACAAAGAGGTGCTTGTCCTTCATTTTGTGAGCGATGAGGCCAGCCGAGAGTTGGGCGAGAGGATGCTCCCGGAGCTGCTCCTCGTCGGAACTTTTCAGTATGAGGTGGTGTTCCATGACGTGGGGGTCCTGAGCCAGAAGCTCTTCCCCATCGTGGAGGCCATGCAGAAGCACTTCAGCGCCGGCTCCGGGGCCTACTATAGTGACGCCATCTTCTTCCTGTCAGTGGCCATGCACCACATCATGCCCGCAGATCTGCAGCGCATTGTACAGCTGGACCTGGATCTGAAGTACAGGAGCAACATCAGGGAGCTGTTTCTGGAGTTTGATCGATTCCCTCCCGGAGCTGTGATCGGCATCGCCCGAGAGATGCAGCCGGTATACAGACACACCTTCTGGCAGTACCGTAAGGAGAACCCTCAGTCCCGTGTGGGGGAGCCTCCTCCCGACGGCTTGCCAGGCTTCAACAGTGGCGTGATGCTGCTGGACCTAGGGGCCATGCGGACCTCAGCCCTCTACAACCAACTCCTGGAGCCCAGAAACGTGGCCCAGCTGGCTGACCAGTACCACTTCAGGGGCCACCTGGGGGACCAGGACTTCTTCAGCATGATCGGCATGGAACACCCAGGGCTGTTCCACCAGTTGGCCTGTGGCTGGAACCGCCAGCTGTGTACCTGGTGGAGGGAGCATGGATATGGGGATGTGTTCCAGCTCTACTACCGCTGTGAGGGGCCGGTGTATATCTACCATGGAAACTGTAATACGCCCATACCCGATGACTGAGTTGGGACCTCGTAATATATTTCCCTAAATGGTGGGTCTGTTTTGTGGTGAACTCATTGGAGGTTTTGGCTCAAGACTGGGTTCTGGAGAGAAAAAAGATATTAGCTACACAACTTTCTGGGTCACAACAAAACTCCAAAAGGTCTTAGTTTAGCCATGTGGCAACAAAAGTTTTGGAATCGAAACCATTTCTGTACTGTACCACTGCTACTGTAAACATTGCTCCCACTCCTGCCCCCTGCTGGACAGGTGTGCAATACAGTCAGTACAAGGCATCTCACTCACTCCACTAATGTCAAGTGATGCTAATGATAAACGTGGAGCATAAAGAGACCTTGCTGGTGAAAATTGCCGAATGCCATACTTTGTTCTCTCAGTTCACTTTTTGGaacatttaacattcttgaaGAATGTTGGACTGTGGTGCAAAAAATAATGGTTAGCGTGCATAAGAGAAAATGGCAAACCTTCACCAACAAAAATAACTCTTTACATAGAATATTCCTGACAAACTGTAATAATACCCTGGTGTAATGTATGAGAGAATATGAGCTGATTAGTGTGAGTATTTTATCTGTGCTAATGTGTGTTTGCTGTGTATCATGGTAGTCAGTCTggatttgtctgtctctctctcttttctccctctaatCAGCGCAAGATTAGGTGAGGGTTAACAATCAGTGCTCATTcacatgtagttcaactagtgatttaactacattttgcagtagcttggtggtagtttaaCTAAATTCGAatcttggtagtgttttcagtagttaattacttGTTTTGCTATGTAGGGATGTAGAtaactactggaattacacacTACTtattttgcaaaaataaaatatatgtgcTGTATGCAATCATTTCATTTCTTTTACAAAGCATCAGACCTGCCTAAATCTCACTTGAAACATAATTTTTGTGTTAAATAGGCTAAATTACACCTTCTGGTTGCATATCACCCTAAAGTGTAGTCTATGGCATTTCAGATTTGTTCACCTAGTAGTGTGGATTTAGTGAagtactttttcaaagtaactttagttaaattaactatatattttttaagggtagctttagtgtagtTTAACTtattccagtgtgaagtaattggtagcttggtaaactatattttcagagtagcttccctgTTGTTTACCAATGCTGGACTCTTTTCTGGCAGGGTGAGTGGGCAGGAAGTACGACGCACTGACACCCACTAGGACATCCCAGTGACTGCGTaatggagagaaaagagggggaggggagagggcggTACAGGTGAGGGatgatgggctacacatacagatGCTTGgcccacacacaaacatatattttCGAGTGAGATTTAGCCACCATTGTGACTACATATTGACCCCGttttgtttgtctctgtgttaccTGGAGCTGACGTTaatatatatgccatttagcagatgcttttatccaaagcgacttattcatgtgtgcatacattttacgtatgggtggtcccgggaatctaACTCACTCTCCTGGCATACTCTACCCACTGAgcgacagagagtagcagaaatCCCACTCAGGAACTTtgatatttacctttatttaactaggcaagtcagttaggaaaccaattcttattttcaatgacggcctaggaacagtgtcaGTTCtgtcaggggcagaatgacagatttgtaccttgtcagctcgggggtttgaacttgcaaccttccggttactagtccaacactctaaccactaggctaccctgccgcccgatATGCCAGTAGAGCAGGGTTCCCCGACTGATTTTATTTGGCGCCCCAAATTTTCTGAGCAAATCATTTTTTTATTGTTAGACATAAAAGGCTGTAAAAACCCCAGCAAAGGAGCTCCAAGTGATAACATTTTTAGacatctgttccaaagtattccccaAAAATAATAGAGAGAtatgtgattgtatacaaatgtaagcaaggtttgaaattattatgtttcagtgaaatattatatctgtttgggcttcttgcagtcaatttgcagttatttacaaattatttgtaagtTACAGACGCAATTTAACCTCCCATGTTATTGTAATGTTGAGAGGTTAGCATGACacactacattatttaccattcatttctattgggcacaaaatactCTGAAACACAACTAAAACAAACATCAAATTCATCCAACAAATTCGTAGTCACAAGCTTAATGTAGTCgttgcgtgctatgaatatgggacaaaatacttcactttttactactttaaaacATATATAAGTGAATGTCCCAATatttttggtcccctaaaatggggggattATGTATAAAAGTCCTGTAATTTCttaacggttcacccgatatggatgaaattccgctcaaattaaagctgacagtctgcagtTCAACCTGTTAGTCATTGTACCATTTCAAATCTAAAGTGCCGGAGTACAGAGCCAAagaaacaaaacatttcactgtcccaatacttttgaagCTCACTGTACATAAGTCATCTGAAGGCAAGCTAATGAGGTCACTCTTTTTTGGATTTGGTCCATTGTATGTACCCTGCGAGTCTATAGAGCAGACTAAGTACAGTTGAACCTAGCAATCAGCCTGCAGGTAAGAGGAATCGACTGCTCTGACACATCAACctgtgtacagtgtgttgtaATGCCAGATCATATCAAGGTTAAGGATAAGCCACTCCAGAACATATAGAATAACATGCAATAGGAAAGATCATCTGCTATTGTTGTATGATGACGGAGCCAAAGTCATGTCTTTTTTAAATTTGTTGAGTGAGACTGAATCTCTTGtattttgtgttgtttttttgtgcTTGTCAAGTTAACGTCTAGGTTTGGCTCTGGGTTATGTCTTTTACATGTTTTTGTGTTGCTGCTTTTGTACTGTACTTTTTTGGTTTTTGAAAGGTTAACCATTGTCTCATTTAGGTAATGTGGATGTGCATATGATTATTAGCTGTGTTCTGTTGTATTGTGGTAGTGTCAGTGCCACTCGTTTGTGTCATATTGTGCAATGAAATTTCAAAGGGCAGGGGTTCAGAAGACCCAACTATACTTTCTCTCAAGTGTCTTTAAATTATCTGGCTGCATTTCAAACCACTGAATGGCCGCAAATGAATGTAGGAACCCcaaaatgttatgttatgttttcTTCAAGGGCATATTCAGCAAAAACGGGTACTCAACACAATAAACGTATATGCACTACGTACTGTATTTAAAACAAATCGCAATAATGCAATCTGTGCACAGCATTTTCATAACCGGTCTCCTCGAAGATACCACTTTAACATTGACTGACAAGGAGTATGTCATACTTCTATGCCGCATTCTTCTCTACATTGAATGGTAACCACGTTGTCACTTCTGATACTTTTCTGTAATATTTACCTTTGCCACCTTGAAAGGATCTCTAATCAGTCTTTCACGTACCTTGGTTTTTATCATATTTGCTGAATAAATCATCAAAACAT
>TU20797
GCTTCCAAAATGTGCATCTTTAACAGAGCTAGTGTTAGCTAGCTTGATAATACTGTACCACAGAACAATGAGGTTAAGTTATGCACATCTTTGACTGTACTGTCGTTGGTACCAGTCTGCCTGCTCCAACTCAGCTGTCACAACTGTCTCTGTATCGAGTTCTCCAACACCAACATGGAAAAGGACTTCTCAACCTTGTCAGGGTGTGGACAAGACTAGTAAATTATTCTCAAACCAACACTGCGCAATAAGGATCCAGCATGTTAAACTCAGGGTTCATCCCAATATTTTTCAAGCTGAGACAATAACAGCACTTCTGCATTCATCTGTGGGAGTCACAGCATGGGTATCCTGAGGGTTCTAGTCAACACTATGGGTAGAGTCAGCACCTTCAGGTCCTATCAGTTTGTCCTCCTCCTCACGGCTGCACTGGCCGTTGTAGCCTTCTATTTCTTTGGCTCAGAGAGGCATGATTTCTCCAGCACCACCAAGCGCATCAAGCAGACCCAGGCCAGCCACAACACCAACCGGAACGACGCA

Function

NR:

description
xyloside xylosyltransferase 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574921.2 False 5259 mRNA 0.43 5 18310688 18383077
TU20797 True 540 lncRNA 0.48 2 18381496 18382880

Neighbor

gene id symbol gene type direction distance location
LOC118944537 NA coding downstream 92978 18215104 ~ 18217710 (-)
LOC110497564 LOC106573866 coding downstream 212010 18089520 ~ 18098678 (-)
LOC110497425 LOC106573868 coding downstream 252086 18008683 ~ 18058602 (-)
jak3 jak3 coding downstream 399161 17872596 ~ 17911527 (-)
LOC110495805 LOC106573878 coding downstream 666029 17637409 ~ 17644659 (-)
LOC110497762 LOC106573859 coding upstream 8044 18390123 ~ 18450517 (-)
LOC110498635 LOC100380752 coding upstream 129459 18512536 ~ 18516021 (-)
LOC110498717 LOC100380752 coding upstream 179362 18562439 ~ 18678439 (-)
LOC118943879 NA coding upstream 307184 18690261 ~ 18692032 (-)
LOC110499356 LOC106573829 coding upstream 385207 18768284 ~ 18825716 (-)
G17068 NA non-coding downstream 129500 18180971 ~ 18181188 (-)
G17067 NA non-coding downstream 130438 18180042 ~ 18180250 (-)
G17063 NA non-coding downstream 132861 18177611 ~ 18177827 (-)
G17056 NA non-coding downstream 135910 18173667 ~ 18174778 (-)
G17032 NA non-coding downstream 149052 18161407 ~ 18161636 (-)
G17773 LOC106573861 non-coding upstream 1234 18384311 ~ 18387905 (-)
G17865 LOC100136725 non-coding upstream 85705 18468782 ~ 18469768 (-)
G17837 NA non-coding upstream 105138 18488215 ~ 18488559 (-)
G17890 NA non-coding upstream 145233 18528310 ~ 18534746 (-)
G16161 LOC106573901 other downstream 1053447 17255236 ~ 17257241 (-)
G16100 LOC106573897 other downstream 1174331 17131420 ~ 17136357 (-)
LOC110492105 homer3 other downstream 1438760 16838135 ~ 16871992 (-)
G15470 NA other downstream 1779212 16531047 ~ 16531476 (-)
mydgf LOC106573827 other upstream 493800 18876547 ~ 18888907 (-)
LOC110502937 ccl25 other upstream 1247416 19630376 ~ 19633058 (-)
G20266 NA other upstream 2416043 20799120 ~ 20800008 (-)
LOC118945319 NA other upstream 2702221 21085298 ~ 21089250 (-)

Expression


Co-expression Network