LOC118943879


Basic Information

Item Value
gene id LOC118943879
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 18690261 ~ 18692032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039187.1
TTATTGAAACGGTTCCTCAGGCTACTATGCCTGGTGCTCCCCATGCTGCTGGTCTCCTTGGACACGAAGGCATCAGGGTGACAGAGGCTTGCCCTGAGGCAGCACAGTTCACACAGCACAGTTCTTCACAGTTCACACAAGCCCCTGGTAACATGTCTCCACCCTGAGGTAGATGGTGGTAATTGCTTATGGGAGTGAAGTGTTCATTTAATTTGACCATGTAGTAATGCAGTACAACAACAAGACAGATATGatatgatttaaaaacatttatttatacaTAAAATGTACTGTGGCCatcaaaaaaatgaataaaactcTACAGTTTTGTAcaatacatacactatatatacaaaagtatgtggacacgacttcaaattagtggatttggctatttcagccacacccgttactgacaggtgtataaaatcaagcacacagccatgcaatctccctagacaaacattgacagtagcatggccttactgaagagctcagtgactttcaacgtggcaccgtcataggatgccacctttccaacaagtcagttcaccAAATTtttaccctgctagagctgccccggtcaactataagtgctgttattgtgaagtggaaatatctaagagcaacaacggctcagcagctaagtggtaggccacacaagccacTACAGAATAGGACCGCCGAGTGTTGAAGTGCGTAGCttttaaaaatcgtctgtccttggttgcaataCCTCactacgagttccaaactgcctctgaaagcaatgtcagcacaataactgtttatcgggagcttcatgaaatggatttccatggccgagcagctgcacaaaagcctaagatcaccacgcgcaatgccaagcgtcggcattgctagtaggtgtccacatacttttggtcatgtagtgtatgtcttTGTATATATGTATAAATCTTATTGTATTCTCAAGAATATCTAAAAACAAAAATAGATTTTTAAATCTCAGTTCTAGTAAAGCACTGAAAAAGTGCACACAGCATATAGACCTCAATGACAGAAACAAGTCATCTGTTTTGAGGCTCAAACAGTGAAACAAAATAAAGCTTCTATAATGCTTCTTTTATAAGAAATCTTGAACAACTCTTTAAAGTTTTTTTTGTAATGCATAACATAAAATGAACTTTAGCAGTATGTGCCAGGTCCTGATCTGATgacaagacaaaaaaaatgaacaaaactAATAACAGAGAAAACCGTTAGCCTGTATCAAAGCTGTATCATGGTTGTATTATGGCTGTATCAAGGCTGTATCTTCATAGTTGTATCAAGACTGTATCTAGGCTGTATCAAGGCTGTATCATGGTTGTATCAAGGCTGTATCTTCATAGTTGTATCATGGTGGTATCAAGGCTGTATCTTCATAGTTGTATCATGGTGGTATCAAGGCTGCATCAAGGCTGTATCTTCATAGTTGTATCATGGTGGTATCAAGGCTGCATCAAGGCTGTATCTTCATAGTTGTATCAAGGCTGTTTCTTCATAGTTTCTTCATGGCTGTATCATGCTTGTATCTAGGCTGTAACAAGGCTGTATCTTCATAGTTGTATCATGGTTGTGCCAATGAGATATATTTTCTACTACCCTGTTTT

Function

NR:

description
protein RCC2 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039187.1 True 1634 mRNA 0.40 2 18690261 18692032

Neighbor

gene id symbol gene type direction distance location
LOC110498717 LOC100380752 coding downstream 11822 18562439 ~ 18678439 (-)
LOC110498635 LOC100380752 coding downstream 174240 18512536 ~ 18516021 (-)
LOC110497762 LOC106573859 coding downstream 239744 18390123 ~ 18450517 (-)
xxylt1 LOC106573863 coding downstream 307184 18310688 ~ 18383077 (-)
LOC118944537 NA coding downstream 472551 18215104 ~ 18217710 (-)
LOC110499356 LOC106573829 coding upstream 76252 18768284 ~ 18825716 (-)
LOC110531991 LOC106573830 coding upstream 142130 18834162 ~ 18841489 (-)
mydgf LOC106573827 coding upstream 184515 18876547 ~ 18888907 (-)
LOC110499862 LOC106573825 coding upstream 198788 18890820 ~ 18895770 (-)
LOC110499955 LOC106573823 coding upstream 213183 18905215 ~ 18921146 (-)
G17906 NA non-coding downstream 133165 18556047 ~ 18557096 (-)
G17890 NA non-coding downstream 155515 18528310 ~ 18534746 (-)
G17837 NA non-coding downstream 201702 18488215 ~ 18488559 (-)
G17865 LOC100136725 non-coding downstream 220493 18468782 ~ 18469768 (-)
G17999 NA non-coding upstream 74027 18766059 ~ 18766711 (-)
G18033 NA non-coding upstream 130620 18822652 ~ 18838680 (-)
G18039 NA non-coding upstream 136956 18828988 ~ 18830361 (-)
G18042 NA non-coding upstream 142640 18834672 ~ 18835532 (-)
G18054 NA non-coding upstream 154342 18846374 ~ 18882728 (-)
LOC110497564 LOC106573866 other downstream 595323 18089520 ~ 18098678 (-)
G16161 LOC106573901 other downstream 1433020 17255236 ~ 17257241 (-)
G16100 LOC106573897 other downstream 1553904 17131420 ~ 17136357 (-)
LOC110492105 homer3 other downstream 1818333 16838135 ~ 16871992 (-)
LOC110502937 ccl25 other upstream 938461 19630376 ~ 19633058 (-)
G20266 NA other upstream 2107088 20799120 ~ 20800008 (-)
LOC118945319 NA other upstream 2393266 21085298 ~ 21089250 (-)
LOC110507736 LOC106573601 other upstream 2843901 21535882 ~ 21565723 (-)

Expression


Co-expression Network