Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110500387 |
| gene name | cherp |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 19052575 ~ 19064650 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cherp | Predicted to enable RNA binding activity. Predicted to be involved in cellular calcium ion homeostasis. Predicted to act upstream of or within RNA processing. Predicted to be active in perinuclear region of cytoplasm. Orthologous to human CHERP (calcium homeostasis endoplasmic reticulum protein). |
| description |
|---|
| calcium homeostasis endoplasmic reticulum protein-like isoform X3 |
| id | description |
|---|---|
| K12841 | CHERP; calcium homeostasis endoplasmic reticulum protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021577848.2 | False | 3273 | mRNA | 0.55 | 18 | 19052575 | 19064650 |
| XM_021577992.2 | False | 3192 | mRNA | 0.55 | 17 | 19052575 | 19064650 |
| XM_021577770.2 | False | 3278 | mRNA | 0.55 | 18 | 19052576 | 19064650 |
| XM_021577923.2 | True | 3239 | mRNA | 0.55 | 17 | 19052576 | 19064650 |
19,044,000
19,046,000
19,048,000
19,050,000
19,052,000
19,054,000
19,056,000
19,058,000
19,060,000
19,062,000
19,064,000
19,066,000
19,068,000
19,070,000
NC_048565.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110500307 | LOC106573820 | coding | upstream | 10608 | 19024216 ~ 19041967 (+) |
| LOC110500236 | LOC106573821 | coding | upstream | 80389 | 18957927 ~ 18972186 (+) |
| LOC110500115 | LOC106573822 | coding | upstream | 98530 | 18922258 ~ 18954045 (+) |
| LOC110499562 | LOC106573826 | coding | upstream | 173658 | 18859952 ~ 18878917 (+) |
| tnfaip8l1 | LOC106573828 | coding | upstream | 199621 | 18841198 ~ 18852954 (+) |
| calr3a | crt | coding | downstream | 4342 | 19068992 ~ 19076771 (+) |
| rad23ab | LOC106573817 | coding | downstream | 12174 | 19076824 ~ 19084655 (+) |
| eps15l1a | eps15l1 | coding | downstream | 26575 | 19091225 ~ 19121925 (+) |
| mrpl54 | LOC106573541 | coding | downstream | 284522 | 19349172 ~ 19351119 (+) |
| LOC110532010 | LOC106613687 | coding | downstream | 287440 | 19352090 ~ 19357017 (+) |
| G17601 | NA | non-coding | upstream | 4295 | 19048022 ~ 19048280 (+) |
| G17564 | NA | non-coding | upstream | 6702 | 19043419 ~ 19045873 (+) |
| G17576 | NA | non-coding | upstream | 43445 | 19008891 ~ 19009130 (+) |
| G17567 | NA | non-coding | upstream | 53272 | 18999100 ~ 18999303 (+) |
| G17566 | NA | non-coding | upstream | 57969 | 18994217 ~ 18994606 (+) |
| G17605 | NA | non-coding | downstream | 15629 | 19080279 ~ 19080491 (+) |
| G17606 | NA | non-coding | downstream | 16235 | 19080885 ~ 19081096 (+) |
| G17607 | NA | non-coding | downstream | 23252 | 19087902 ~ 19088231 (+) |
| G17615 | NA | non-coding | downstream | 47817 | 19112467 ~ 19112947 (+) |
| G17420 | NA | other | upstream | 96367 | 18882723 ~ 18956208 (+) |
| ccdc124 | cc124 | other | upstream | 1061399 | 17975918 ~ 17991176 (+) |
| LOC110495874 | LOC106573877 | other | upstream | 1387567 | 17654164 ~ 17673094 (+) |
| LOC110492876 | LOC106613263 | other | upstream | 2084785 | 16962997 ~ 16967790 (+) |
| LOC110492606 | LOC106573909 | other | upstream | 2132166 | 16916482 ~ 16920945 (+) |
| G18481 | NA | other | downstream | 500199 | 19564849 ~ 19565221 (+) |
| LOC110502506 | LOC106573550 | other | downstream | 504135 | 19568684 ~ 19575028 (+) |
| LOC110503939 | LOC106573564 | other | downstream | 799141 | 19863734 ~ 19865619 (+) |
| G19083 | NA | other | downstream | 850936 | 19915586 ~ 19915832 (+) |
| G19359 | NA | other | downstream | 1177995 | 20242645 ~ 20242875 (+) |
