Gene
RNA
| Item | Value |
|---|---|
| gene id | eps15l1a |
| gene name | eps15l1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 19091225 ~ 19121925 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| eps15l1 | Enables cadherin binding activity. Predicted to be involved in endocytosis and endosomal transport. Located in membrane. |
| description |
|---|
| PREDICTED: epidermal growth factor receptor substrate 15-like 1 isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036962420.1 | False | 2907 | mRNA | 0.55 | 25 | 19091225 | 19117996 |
| XM_036962470.1 | False | 2745 | mRNA | 0.55 | 24 | 19091225 | 19117996 |
| XM_021578432.2 | False | 6850 | mRNA | 0.46 | 24 | 19091225 | 19121925 |
| XM_036962172.1 | False | 6883 | mRNA | 0.46 | 25 | 19091225 | 19121925 |
| XM_036962205.1 | False | 6862 | mRNA | 0.46 | 25 | 19091225 | 19121925 |
| XM_036962239.1 | False | 6853 | mRNA | 0.46 | 26 | 19091225 | 19121925 |
| XM_036962367.1 | False | 6900 | mRNA | 0.46 | 26 | 19091225 | 19121925 |
| XM_036962325.1 | False | 6831 | mRNA | 0.46 | 24 | 19091235 | 19121925 |
| TU20624 | True | 4187 | lncRNA | 0.33 | 2 | 19117255 | 19121889 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| rad23ab | LOC106573817 | coding | upstream | 6570 | 19076824 ~ 19084655 (+) |
| calr3a | crt | coding | upstream | 14454 | 19068992 ~ 19076771 (+) |
| LOC110500387 | cherp | coding | upstream | 26575 | 19052575 ~ 19064650 (+) |
| LOC110500307 | LOC106573820 | coding | upstream | 49258 | 19024216 ~ 19041967 (+) |
| LOC110500236 | LOC106573821 | coding | upstream | 119039 | 18957927 ~ 18972186 (+) |
| mrpl54 | LOC106573541 | coding | downstream | 227247 | 19349172 ~ 19351119 (+) |
| LOC110532010 | LOC106613687 | coding | downstream | 230165 | 19352090 ~ 19357017 (+) |
| LOC110501592 | LOC106573542 | coding | downstream | 237486 | 19359411 ~ 19368957 (+) |
| si:ch1073-396h14.1 | LOC106573543 | coding | downstream | 263059 | 19384984 ~ 19442316 (+) |
| tpm4a | LOC106573547 | coding | downstream | 389032 | 19510957 ~ 19536556 (+) |
| G17607 | NA | non-coding | upstream | 2994 | 19087902 ~ 19088231 (+) |
| G17606 | NA | non-coding | upstream | 10129 | 19080885 ~ 19081096 (+) |
| G17605 | NA | non-coding | upstream | 10734 | 19080279 ~ 19080491 (+) |
| G17601 | NA | non-coding | upstream | 42945 | 19048022 ~ 19048280 (+) |
| G17564 | NA | non-coding | upstream | 45352 | 19043419 ~ 19045873 (+) |
| G17616 | NA | non-coding | downstream | 327 | 19122252 ~ 19122585 (+) |
| G17640 | NA | non-coding | downstream | 33739 | 19155664 ~ 19156178 (+) |
| G17642 | NA | non-coding | downstream | 35987 | 19157912 ~ 19158166 (+) |
| G18281 | NA | non-coding | downstream | 100824 | 19222749 ~ 19222978 (+) |
| G18288 | NA | non-coding | downstream | 107876 | 19229801 ~ 19230019 (+) |
| G17420 | NA | other | upstream | 135017 | 18882723 ~ 18956208 (+) |
| ccdc124 | cc124 | other | upstream | 1100049 | 17975918 ~ 17991176 (+) |
| LOC110495874 | LOC106573877 | other | upstream | 1426217 | 17654164 ~ 17673094 (+) |
| LOC110492876 | LOC106613263 | other | upstream | 2123435 | 16962997 ~ 16967790 (+) |
| LOC110492606 | LOC106573909 | other | upstream | 2170816 | 16916482 ~ 16920945 (+) |
| G18481 | NA | other | downstream | 442924 | 19564849 ~ 19565221 (+) |
| LOC110502506 | LOC106573550 | other | downstream | 446860 | 19568684 ~ 19575028 (+) |
| LOC110503939 | LOC106573564 | other | downstream | 741866 | 19863734 ~ 19865619 (+) |
| G19083 | NA | other | downstream | 793661 | 19915586 ~ 19915832 (+) |
| G19359 | NA | other | downstream | 1120720 | 20242645 ~ 20242875 (+) |
| G17615 | NA | non-coding | upstream | 4308 | 19112467 ~ 19112947 (+) |
