LOC110501271 (klf2)


Basic Information

Item Value
gene id LOC110501271
gene name klf2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19128583 ~ 19131233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578727.2
AAAGCTCGCACGAGCGCATGAGGGGAAGCAAAGAGACTGCAAGGCTCACTGGCTTAATATAGGTGCCTGTTTCCTCCGCTTCGTACAATAGGTCCAGCTTTTCAGCTACAATATTTATAAGGTATATAGGAACTCCTACCAATCAAACTTGCACATGACACTGAAACACTATTTCAAGTGAGGAGATATAGTGATTTACTACTACAACTAGTTTCTCTCGTGGACTTAACATCGCTTTTGCTGATATTCATAGACAGAAAGAAGGTTTTTTATTCAAGAAAAAAACGAATTTATTTTGTCATTACAACGTATGGAAATGTCCTTAACCGGGACCATTTTACCATCCATCGACACATTTGCGAACCAAAAGGAAAAATGCTGGGAATATAGGTGGAAGGGCGAGATGGACAGGTCGGTTCATTCCAGCTGTGCCGTGGCTGAGGGCATGGACATCTGCATGGGCATAAAAGACGAAGAGGAGCTAGATAAATTCCTGGATCTGGAGTTTATTCTCTCTAACTCCACTGGCACAGACAGCAACACTCCATCCTCCGGGACAGAGGGAGACTACAGGCTAGCAGAGCAGAACAACATGTACCACTCCGTGATGCAGTCTACCTACACGGTGCCCGAGATAAACATTCCACCTCCGCCATACAACAGCCTGATGGCTGAGCTCCTGCGCAATGAGCTTGACAGCAGCTTCTGCCACCAGCCCTCTGGCAACAGCGTCCATGGGAGATTTCTAGTCAGTTCGTCTGCTTTCCCAAATCAGGACTTTCCAGACAACATTAAGGTCGAGCAATCCATGGACAGTTACCGACCAGTTATGGAAATGGTCCCTCAGAGCTGCCCAAAAATCAAGCAGGAGGGGAATGTTTCGTGCATGATGTCCTTCGAGCATCCGAGACTAGCCAACTCTCCGCAGTCTGCGGGGAACATGACACCACCTCTCAGCCCAGACGACCTGATGAGCTCCGAGTGTCAGACCCAGATGTGCCACTCCCTGACTTTCCCGCAGAGCTACCGTTCCGCAGCGTGCTACCCTCACTCTCACCCGCCCCCACAGATGCAGCTCTCGTACCAGAGCGCACACCAGTTCGGGATGTACGAAGACGGAATGGGTATACAGCACACCAATCAGAGAGCGCTGCTCACTCCACCGTCCTCTCCGTTGGAGATGATGGACTCAAAGCCAAAAAGGGGTCGGCGTTCCTGGCCAAGGAAGCGCACAGCGAGTCACACTTGCACTTTCGCTGGATGCGCGAAAACCTACACCAAGAGCTCGCACTTGAAAGCGCACCACAGAACGCACACAGgagagaaaccataccATTGCAGTTGGGAGGGTTGTGGCTGGAAGTTCGCCCGCTCCGACGAGCTGACGCGCCATTTCCGTAAGCACACTGGACACAGGCCGTTCCAGTGCCACCTGTGCGAGCGCGCCTTCTCCAGGTCCGACCACCTCGCGCTGCACATGAAGCGACACATGTGAGAAATCACATACGATTGAGGACTTTGCCAAATGAACCAAGAACGACATCAAGAAAGATATCtccaaaaatatgtattttgtatttttgtttgtttatttaacgTTTTTTGAGGAATAGGAAAACAGcatatgaaaataaaacatcgTCATAGGAATTCTATATACAAATACTATTTTAAAAATATGTAGCTGGTACTACTTTGTTATTTTTTATCGAATAATATTTTGTAAAAGGCTTTAAAAAGTGCATTACACGGAGTTGGCATTTGTGAATTCAAGTCAACAAATCAGGTTGGCTCTAAGTACACCCCTGACACAACTGGAATCTTACAATAACATTGTTTAATATGATGTGTTTTGATATTCAAGATAGTGCCTTCTATTATATGCATCCTACGAGTGCCATATTTTTTACTGGCAAAAAAGCAATGTTTATCTATGTGTTATAACTGTAAACAGCACATGAAATAAGCTTTAAGACAATGTTTTGATCTAAAACTGCCTTTCAGTCTTCAGAGGCTTGAATTGAATGTTCTGTGTGTGCATTTACCTCTTGAATAACATTTCATGTCAGGGTCTTTAAAACTATGGAAATAAGAGTAACCATCTCAACATGACAAAGGGCTAAAAGTCTTGTGACTTAATGTTCTTTTTGGTTTTCTGAGTAAATGTATTATTGCcatgtaaatatattttatataatgtAAATAGTTTATTTTAATGTACATATTAAACTAATTGAACAACATAA

Function

symbol description
klf2 Enables DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Involved in several processes, including cellular stress response to acid chemical; positive regulation of retinoic acid receptor signaling pathway; and regulation of transcription by RNA polymerase II. Located in chromatin.

NR:

description
Krueppel-like factor 2

GO:

id name namespace
GO:0061444 endocardial cushion cell development biological_process
GO:0003171 atrioventricular valve development biological_process
GO:0006809 nitric oxide biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578727.2 True 2246 mRNA 0.44 3 19128583 19131233

Neighbor

gene id symbol gene type direction distance location
c1h19orf44 crt coding downstream 58090 19064745 ~ 19071856 (-)
LOC110499955 LOC106573823 coding downstream 207437 18905215 ~ 18921146 (-)
LOC110499862 LOC106573825 coding downstream 232813 18890820 ~ 18895770 (-)
mydgf LOC106573827 coding downstream 239676 18876547 ~ 18888907 (-)
LOC110531991 LOC106573830 coding downstream 287094 18834162 ~ 18841489 (-)
LOC110501398 ap1m1 coding upstream 178472 19309705 ~ 19334685 (-)
fam32a fa32a coding upstream 209175 19340408 ~ 19342021 (-)
LOC110501773 LOC106573544 coding upstream 321684 19452917 ~ 19464238 (-)
LOC110501969 LOC106573546 coding upstream 343355 19474588 ~ 19483323 (-)
LOC110502382 LOC106573549 coding upstream 405194 19536427 ~ 19538782 (-)
G18199 NA non-coding downstream 32379 19095032 ~ 19096204 (-)
G18191 NA non-coding downstream 40767 19084211 ~ 19087816 (-)
G18193 LOC106573817 non-coding downstream 44839 19083504 ~ 19083744 (-)
G18192 LOC106573817 non-coding downstream 46082 19081769 ~ 19082501 (-)
G18190 NA non-coding downstream 48393 19079934 ~ 19080190 (-)
G18234 NA non-coding upstream 25975 19157208 ~ 19157419 (-)
G18236 NA non-coding upstream 27052 19158285 ~ 19158548 (-)
G18646 NA non-coding upstream 127349 19258582 ~ 19258860 (-)
G18700 NA non-coding upstream 205812 19337045 ~ 19338926 (-)
G18704 NA non-coding upstream 212216 19343449 ~ 19343769 (-)
LOC110497762 LOC106573859 other downstream 733723 18390123 ~ 18450517 (-)
LOC110497564 LOC106573866 other downstream 1033645 18089520 ~ 18098678 (-)
G16161 LOC106573901 other downstream 1871342 17255236 ~ 17257241 (-)
G16100 LOC106573897 other downstream 1992226 17131420 ~ 17136357 (-)
LOC110502937 ccl25 other upstream 499260 19630376 ~ 19633058 (-)
G20266 NA other upstream 1667887 20799120 ~ 20800008 (-)
LOC118945319 NA other upstream 1954065 21085298 ~ 21089250 (-)
LOC110507736 LOC106573601 other upstream 2404700 21535882 ~ 21565723 (-)
G21993 NA other upstream 3250637 22381870 ~ 22382208 (-)

Expression


Co-expression Network