LOC110501398 (ap1m1)


Basic Information

Item Value
gene id LOC110501398
gene name ap1m1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19309705 ~ 19334685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962687.1
GTTCTGGTTTGCCGTAACTACAGAGGAGATGTGGACATGTCAGAGATTGAGCACTTTATGCCCATCCtcatggacagagaggaggagggtaacTTATCCCCTATCCTGGCCCACGGAGGTGTCCGCTTCATGTGGATCAAACACAACAACCTGTACCTTGTAGCAACGTCTAAGAAAAATGCTTGTGTCTCATTGGTCTTCTCTTTCCTCTACAAAATTATTCAGGTTTTTTTCAGAGTATTTTAAGGAGTTGGAAGAGGAGAGTATCAGAGATAACTTTGTCATCATCTATGAGTTGATGGATGAGTTGATGGACTTTGGCTACCCCCAGACCACTGACAGCAAGATCCTTCAAGAGTACATCACCCAAGAGGGGCACAAGCTAGACACGGGGGGCCCGCGCCCCCCTGCTACTGTCACCAACGCAGTGTCCTGGAGGTCAGAAGGCATCAAGTACAGGAAGAACGAAGTCTTCCTGGACGTCATTGAGTCTGTTAATCTTCTGGTCAGTGCGAATGGTAACGTGCTGCGCAGTGAGATCGTGGGCTCCATCAAGATGCGGGTGTTCCTGTCAGGGATGCCCGAGCTGCGTCTGGGGCTCAACGACAAAGTTCTCTTTGAGAACACTGGCCGAGGGAAGAGTAAATCAGTGGAGCTGGAGGACACCAAATTCCACCAGTGTGTGCGTCTGTCCCGCTTTGAGAATGACCGCACCATTTCTTTCATTCCTCCCGATGGAGAGTTTGAGCTCATGTCCTACCGCCTCAACAcacatGTGAAGCCCCTGATCTGGATAGAGTCGGTGATAGAGAAACACTCCCACAGCAGGATCGAGTACATGATCAAGGCTAAGAGTCAGTTCAAGAGGCGGTCCACAGCCAACAATGTGGAGATTCACATTCCAGTTCCCACAGACGCCGACTCGCCCAAGTTCAAGACCACGGTGGGCAGTGTCAAGTGGATCCCAGAGAACAGCGAGGTCGTCTGGTCCATTAAGTCATTCCCGGGGGGTAAGGAGTATCTGATGAGGGCCCACTTCGGTCTGCCTAGTGTGGAAGCAGAGGACAAGGAGGGGAAGCCCCCCATCAGTGTCAAGTTTGAGATTCCCTACTTCACTACTTCTGGCATCCAGATTACCAGCTCCGAACCCAATAGAAACTACAGCAGGAAAGGGAAAGGCCCATATTTCAATGGATGGAACATTGTTGGTCACGGATGTGTAATTACTTTTAGTCCTTTGTCATGGACATTTGTTGTCAATTGACTTCATTTGTTTTCTTTTCAAGTTTGAAGTTTGTTTCATGTTTAGTGCCATAATACAGAAATTATATTCCTCAAAATAAATATACGTTTTTATTTGGTTACAGTTGTGCTCTAAAAGTAGTGAGATGTATGATATTTCTATAGTAGGTCAGTTGCAAATAATGAATACAATTGTTGATACTCTACTTACCTCTTTTCCATCTAAATCACCTGCTTGCAATGTGGTCATATATTTTAAAGGTCAATTTCAGGTGTTACAAGTTGAGTGTGACCAACAAACCAGTGAAGTGTTATAAGAAGTTTAATGTGAATTTACACACAgcgttcttcatttgtctgttttCCTGATTACTTAGTGATAGCCTGATGCAAGGCTGAAAAAGCTCTTCAATATATTGCCTGGTCCGGAATCATCGGACATCAGTCTGTATGGCTGTTATGATGAGAATAAGGTGCATTGGTACATTTGTGCAGATCGAAGTGAGCACTTAAAATGGTCAAACTATAATAAAATATTTGCCACAAGTTTTTATTGCAGTTCCTTTAGGCCACCATTACCTCTGAATAATCAAATCCTAAATGTTTATTGGGATGTATTAAGTTGCTGATTAGCTGttgatacatttttatatttgtgTAATTTTCATCTCTTGATTTATCCTCACATTATTCAGTGGAATACAACATGCTCAATGGAAGGCAACATTTTTATAAACCGTTCTGAACGAAGCTAGCTATTAAATGGTATTGTACATTCCTGGCAGATCTTTTAGGTGACTTGTGTTAACAATTGACTGCCGTGGTTGCTTCAATAAGTTCTCAAAAACTAGGCCAAAAGCTTTAAACCTCAAATTTGCAAAAACATCCCTATAGTGATACCACCATCAGATATTTTCTCCctcataaaataaaaatgttatggTCTTGTTTGCTGTAAACTGATGTTtatgtccaaatcaaagagacAACAGTCCGAGTG
>XM_021578979.2
taaaccccaccaaagaagaagaagaaggcggTGACAGCTTCCCGGAAGTGGAGCATGTAACGTTTTGTGTCTTCTGGCTTGTGAAGTGACGTGTGCACAAAACCTGGTCAATGGTAGCGAAAAACACCTAGCACCCCTAGTTGGATGCTACCGTACCGCTACATATTTTTATATTGTACTGTTTAcatattataaatatatttatcACCAACTCGTAGTAAGTTACGGCGAACTAGAAGCAAAATGTCAGCAAGTGCGGTTTACGTGTTAGACCTCAAAGGCAAGGTTCTGGTTTGCCGTAACTACAGAGGAGATGTGGACATGTCAGAGATTGAGCACTTTATGCCCATCCtcatggacagagaggaggagggtaacTTATCCCCTATCCTGGCCCACGGAGGTGTCCGCTTCATGTGGATCAAACACAACAACCTGTACCTTGTAGCAACGTCTAAGAAAAATGCTTGTGTCTCATTGGTCTTCTCTTTCCTCTACAAAATTATTCAGGTTTTTTCAGAGTATTTTAAGGAGTTGGAAGAGGAGAGTATCAGAGATAACTTTGTCATCATCTATGAGTTGATGGATGAGTTGATGGACTTTGGCTACCCCCAGACCACTGACAGCAAGATCCTTCAAGAGTACATCACCCAAGAGGGGCACAAGCTAGACACGGGGGGCCCGCGCCCCCCTGCTACTGTCACCAACGCAGTGTCCTGGAGGTCAGAAGGCATCAAGTACAGGAAGAACGAAGTCTTCCTGGACGTCATTGAGTCTGTTAATCTTCTGGTCAGTGCGAATGGTAACGTGCTGCGCAGTGAGATCGTGGGCTCCATCAAGATGCGGGTGTTCCTGTCAGGGATGCCCGAGCTGCGTCTGGGGCTCAACGACAAAGTTCTCTTTGAGAACACTGGCCGAGGGAAGAGTAAATCAGTGGAGCTGGAGGACACCAAATTCCACCAGTGTGTGCGTCTGTCCCGCTTTGAGAATGACCGCACCATTTCTTTCATTCCTCCCGATGGAGAGTTTGAGCTCATGTCCTACCGCCTCAACAcacatGTGAAGCCCCTGATCTGGATAGAGTCGGTGATAGAGAAACACTCCCACAGCAGGATCGAGTACATGATCAAGGCTAAGAGTCAGTTCAAGAGGCGGTCCACAGCCAACAATGTGGAGATTCACATTCCAGTTCCCACAGACGCCGACTCGCCCAAGTTCAAGACCACGGTGGGCAGTGTCAAGTGGATCCCAGAGAACAGCGAGGTCGTCTGGTCCATTAAGTCATTCCCGGGGGGTAAGGAGTATCTGATGAGGGCCCACTTCGGTCTGCCTAGTGTGGAAGCAGAGGACAAGGAGGGGAAGCCCCCCATCAGTGTCAAGTTTGAGATTCCCTACTTCACTACTTCTGGCATCCAGGTGCGCTACCTGAAGATCATTGAGAAGAGTGGCTACCAGGCTCTGCCATGGGTTCGATACATCACACAGAACGGGGATTACCAGCTCCGAACCCAATAGAAACTACAGCAGGAAAGGGAAAGGCCCATATTTCAATGGATGGAACATTGTTGGTCACGGATGTGTAATTACTTTTAGTCCTTTGTCATGGACATTTGTTGTCAATTGACTTCATTTGTTTTCTTTTCAAGTTTGAAGTTTGTTTCATGTTTAGTGCCATAATACAGAAATTATATTCCTCAAAATAAATATACGTTTTTATTTGGTTACAGTTGTGCTCTAAAAGTAGTGAGATGTATGATATTTCTATAGTAGGTCAGTTGCAAATAATGAATACAATTGTTGATACTCTACTTACCTCTTTTCCATCTAAATCACCTGCTTGCAATGTGGTCATATATTTTAAAGGTCAATTTCAGGTGTTACAAGTTGAGTGTGACCAACAAACCAGTGAAGTGTTATAAGAAGTTTAATGTGAATTTACACACAgcgttcttcatttgtctgttttCCTGATTACTTAGTGATAGCCTGATGCAAGGCTGAAAAAGCTCTTCAATATATTGCCTGGTCCGGAATCATCGGACATCAGTCTGTATGGCTGTTATGATGAGAATAAGGTGCATTGGTACATTTGTGCAGATCGAAGTGAGCACTTAAAATGGTCAAACTATAATAAAATATTTGCCACAAGTTTTTATTGCAGTTCCTTTAGGCCACCATTACCTCTGAATAATCAAATCCTAAATGTTTATTGGGATGTATTAAGTTGCTGATTAGCTGttgatacatttttatatttgtgTAATTTTCATCTCTTGATTTATCCTCACATTATTCAGTGGAATACAACATGCTCAATGGAAGGCAACATTTTTATAAACCGTTCTGAACGAAGCTAGCTATTAAATGGTATTGTACATTCCTGGCAGATCTTTTAGGTGACTTGTGTTAACAATTGACTGCCGTGGTTGCTTCAATAAGTTCTCAAAAACTAGGCCAAAAGCTTTAAACCTCAAATTTGCAAAAACATCCCTATAGTGATACCACCATCAGATATTTTCTCCctcataaaataaaaatgttatggTCTTGTTTGCTGTAAACTGATGTTtatgtccaaatcaaagagacAACAGTCCGAGTG
>XM_036962613.1
taaaccccaccaaagaagaagaagaaggcggTGACAGCTTCCCGGAAGTGGAGCATGTAACGTTTTGTGTCTTCTGGCTTGTGAAGTGACGTGTGCACAAAACCTGGTCAATGGTAGCGAAAAACACCTAGCACCCCTAGTTGGATGCTACCGTACCGCTACATATTTTTATATTGTACTGTTTAcatattataaatatatttatcACCAACTCGTAGTAAGTTACGGCGAACTAGAAGCAAAATGTCAGCAAGTGCGGTTTACGTGTTAGACCTCAAAGGCAAGGTTCTGGTTTGCCGTAACTACAGAGGAGATGTGGACATGTCAGAGATTGAGCACTTTATGCCCATCCtcatggacagagaggaggagggtaacTTATCCCCTATCCTGGCCCACGGAGGTGTCCGCTTCATGTGGATCAAACACAACAACCTGTACCTTGTAGCAACGTCTAAGAAAAATGCTTGTGTCTCATTGGTCTTCTCTTTCCTCTACAAAATTATTCAGGTTTTTTCAGAGTATTTTAAGGAGTTGGAAGAGGAGAGTATCAGAGATAACTTTGTCATCATCTATGAGTTGATGGATGAGTTGATGGACTTTGGCTACCCCCAGACCACTGACAGCAAGATCCTTCAAGAGTACATCACCCAAGAGGGGCACAAGCTAGACACGGGGGGCCCGCGCCCCCCTGCTACTGTCACCAACGCAGTGTCCTGGAGGTCAGAAGGCATCAAGTACAGGAAGAACGAAGTCTTCCTGGACGTCATTGAGTCTGTTAATCTTCTGGTCAGTGCGAATGGTAACGTGCTGCGCAGTGAGATCGTGGGCTCCATCAAGATGCGGGTGTTCCTGTCAGGGATGCCCGAGCTGCGTCTGGGGCTCAACGACAAAGTTCTCTTTGAGAACACTGGCCGAGGGAAGAGTAAATCAGTGGAGCTGGAGGACACCAAATTCCACCAGTGTGTGCGTCTGTCCCGCTTTGAGAATGACCGCACCATTTCTTTCATTCCTCCCGATGGAGAGTTTGAGCTCATGTCCTACCGCCTCAACAcacatGTGAAGCCCCTGATCTGGATAGAGTCGGTGATAGAGAAACACTCCCACAGCAGGATCGAGTACATGATCAAGGCTAAGAGTCAGTTCAAGAGGCGGTCCACAGCCAACAATGTGGAGATTCACATTCCAGTTCCCACAGACGCCGACTCGCCCAAGTTCAAGACCACGGTGGGCAGTGTCAAGTGGATCCCAGAGAACAGCGAGGTCGTCTGGTCCATTAAGTCATTCCCGGGGGGTAAGGAGTATCTGATGAGGGCCCACTTCGGTCTGCCTAGTGTGGAAGCAGAGGACAAGGAGGGGAAGCCCCCCATCAGTGTCAAGTTTGAGATTCCCTACTTCACTACTTCTGGCATCCAGATTACCAGCTCCGAACCCAATAGAAACTACAGCAGGAAAGGGAAAGGCCCATATTTCAATGGATGGAACATTGTTGGTCACGGATGTGTAATTACTTTTAGTCCTTTGTCATGGACATTTGTTGTCAATTGACTTCATTTGTTTTCTTTTCAAGTTTGAAGTTTGTTTCATGTTTAGTGCCATAATACAGAAATTATATTCCTCAAAATAAATATACGTTTTTATTTGGTTACAGTTGTGCTCTAAAAGTAGTGAGATGTATGATATTTCTATAGTAGGTCAGTTGCAAATAATGAATACAATTGTTGATACTCTACTTACCTCTTTTCCATCTAAATCACCTGCTTGCAATGTGGTCATATATTTTAAAGGTCAATTTCAGGTGTTACAAGTTGAGTGTGACCAACAAACCAGTGAAGTGTTATAAGAAGTTTAATGTGAATTTACACACAgcgttcttcatttgtctgttttCCTGATTACTTAGTGATAGCCTGATGCAAGGCTGAAAAAGCTCTTCAATATATTGCCTGGTCCGGAATCATCGGACATCAGTCTGTATGGCTGTTATGATGAGAATAAGGTGCATTGGTACATTTGTGCAGATCGAAGTGAGCACTTAAAATGGTCAAACTATAATAAAATATTTGCCACAAGTTTTTATTGCAGTTCCTTTAGGCCACCATTACCTCTGAATAATCAAATCCTAAATGTTTATTGGGATGTATTAAGTTGCTGATTAGCTGttgatacatttttatatttgtgTAATTTTCATCTCTTGATTTATCCTCACATTATTCAGTGGAATACAACATGCTCAATGGAAGGCAACATTTTTATAAACCGTTCTGAACGAAGCTAGCTATTAAATGGTATTGTACATTCCTGGCAGATCTTTTAGGTGACTTGTGTTAACAATTGACTGCCGTGGTTGCTTCAATAAGTTCTCAAAAACTAGGCCAAAAGCTTTAAACCTCAAATTTGCAAAAACATCCCTATAGTGATACCACCATCAGATATTTTCTCCctcataaaataaaaatgttatggTCTTGTTTGCTGTAAACTGATGTTtatgtccaaatcaaagagacAACAGTCCGAGTG

Function

symbol description
ap1m1 Predicted to enable clathrin adaptor activity. Acts upstream of or within brain development and digestive tract development. Predicted to be located in Golgi apparatus and clathrin-coated vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in clathrin-coated vesicle. Is expressed in several structures, including central nervous system; digestive system; eye; gonad; and heart. Orthologous to human AP1M1 (adaptor related protein complex 1 subunit mu 1).

NR:

description
AP-1 complex subunit mu-1 isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962687.1 False 2242 mRNA 0.43 10 19309705 19328997
XM_021578979.2 False 2602 mRNA 0.43 12 19309705 19334685
XM_036962613.1 True 2526 mRNA 0.43 11 19309705 19334685

Neighbor

gene id symbol gene type direction distance location
LOC110501271 klf2 coding downstream 178472 19128583 ~ 19131233 (-)
c1h19orf44 crt coding downstream 239212 19064745 ~ 19071856 (-)
LOC110499955 LOC106573823 coding downstream 388559 18905215 ~ 18921146 (-)
LOC110499862 LOC106573825 coding downstream 413935 18890820 ~ 18895770 (-)
mydgf LOC106573827 coding downstream 420798 18876547 ~ 18888907 (-)
fam32a fa32a coding upstream 5723 19340408 ~ 19342021 (-)
LOC110501773 LOC106573544 coding upstream 118232 19452917 ~ 19464238 (-)
LOC110501969 LOC106573546 coding upstream 139903 19474588 ~ 19483323 (-)
LOC110502382 LOC106573549 coding upstream 201742 19536427 ~ 19538782 (-)
LOC110502819 dpoe4 coding upstream 270479 19605164 ~ 19620194 (-)
G18646 NA non-coding downstream 50845 19258582 ~ 19258860 (-)
G18236 NA non-coding downstream 151157 19158285 ~ 19158548 (-)
G18234 NA non-coding downstream 152286 19157208 ~ 19157419 (-)
G18199 NA non-coding downstream 213501 19095032 ~ 19096204 (-)
G18191 NA non-coding downstream 221889 19084211 ~ 19087816 (-)
G18700 NA non-coding upstream 2360 19337045 ~ 19338926 (-)
G18704 NA non-coding upstream 8764 19343449 ~ 19343769 (-)
G18714 NA non-coding upstream 19969 19354654 ~ 19354999 (-)
G18686 NA non-coding upstream 33305 19367990 ~ 19368944 (-)
G18720 NA non-coding upstream 35771 19370456 ~ 19371565 (-)
LOC110497762 LOC106573859 other downstream 914845 18390123 ~ 18450517 (-)
LOC110497564 LOC106573866 other downstream 1214767 18089520 ~ 18098678 (-)
G16161 LOC106573901 other downstream 2052464 17255236 ~ 17257241 (-)
G16100 LOC106573897 other downstream 2173348 17131420 ~ 17136357 (-)
LOC110502937 ccl25 other upstream 295808 19630376 ~ 19633058 (-)
G20266 NA other upstream 1464435 20799120 ~ 20800008 (-)
LOC118945319 NA other upstream 1750613 21085298 ~ 21089250 (-)
LOC110507736 LOC106573601 other upstream 2201248 21535882 ~ 21565723 (-)
G21993 NA other upstream 3047185 22381870 ~ 22382208 (-)

Expression


Co-expression Network