LOC110503352 (LOC106573557)



Basic Information


Item Value
gene id LOC110503352
gene name LOC106573557
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19732869 ~ 19743641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021581734.2
CAATGCTCATTCTAAGATGAAGTTATGGAAGTGTGCCACCATCGCCTTGACTCTTTGTGGTACAGCACTGTCCTTCTTCCTCACTAGAATCATGGTTCCCACGCCGCCGCATCACTTCCTCTCCTGGGACTGGTCTTCACCGCGGACATCAGACTccgcctccacctccacctcctcctcctcctccaactctTCTTCCTCCCTGATCGGACCTCATCGCAAAGCGCGGTCGACAGATGGCATCAGCAACATTTTGACAGAATTCATGCACATGTTCCAGAGCTTTACAGAGGGGGAGCTGAAGAAGGTGATCGGGACTCTGGtggagaagaaggcacagcaggAGGCCAGGCAGGAGGCTCGGCAGAGCAAAAGGACTAAACGAGCTAAGAAAGCATCGAAGCCATGTTCCCTGCGGGAGGTGGAAGTGACTGTCAGTGAGCTGGGTCTGGGCTACTACAGCGACGAAACGCTGCTCTTCAGGTACTGCAGCGGGAACTGTAATGCTAGCCGCCGCAACTACGACCTCATACTGGAAAAATGGACGAGGAAAGGCATCTCAAAGAGGGAGAGGAGCCCCTGTTGCCGGCCCAAGGAGTACGATGACATTTCCTTCTTGGACAACAGTAACAGATACCAGGCGCTCCACGAGTTTTCTGCTCTAGCGTGCGGTTGTGTATAACACCTAGATGGTGACCATTTTGGCTTTCCAGATACTGTATCGAACATGGGAAAcgcaacaactactgctacaaaaaaaaaaacaggagtaCACAAGAATAGATCCCTACAGTATGACGCCAGGGAATACGGACATTTGAAACCACCATCTATTCTACCATCTGTTCATTAATTTTGTTTGTTTAGCTTTCTTTGCCTTTCATGGGATATTTCTCTGTTGGTTTATACATTGTATGTCCTGGGATTATACATTTGTCATCATGGGGCAATCACAGTTAAAGTAACGATTTGTTTCTTGATTGTGGACTATGTAGCAATGCCTCCACTACCAATACAGAAGACCAGCTAAGGTATAACTAGTGCATTGTACACTGCAAGTCTGTTCTTATACTACACTTGTAAGAGGCCTGGTTTATTTTTTCAGGAATTAGTGTGTAGAAGTGTGTACATGGAAAATAGTAGAATAATATAGGGAATGCCAAGGAAGACATGTACAGTATACAAAAGGATGAAACCAACATGAAGCTACCACAGTGTGCTTCTCCACAACTTCTTGATCTGCACCATTGATAACGCATGAGGTATCACGAAGGCAAGTCCAATGGAGCAGCAACAGCAGTACTAGGAAAGACTAGAGGCTTGGAGAAACATGTATAGCAGTCTTCACTTCATATTATGTGTATAGGCACTCCTTCATATCACAGGTAATGAACTGAATCATGACATTTTTAGCCTTCATCAGTAACTTTGAAAATCTACCTCATTTATGTTGAACAATAATGGACAACATCCGATGTAAAAACACACGAACATGTTCTTCAACAGCTTCCTCTGTATTCATCACTAGGACCAGACCAAAAGGAGATATTTTAGTAATAAATAATGGCCTATATTGGCATATGAAGCTGTAGGGTAAAACAACAAAAAAGAGCTAGCCCACAGCCTGTTCTATGCATGCTAAATATAGAGACGGTATGGGTGATTTAGGCTTAATGACAACAGCTTGTTAATCAAATGGAATGGCTATAGCTGTATAAATAAGCCAGTTCCCAGAAAGAACAATCCAGCAGAAAAACAATGTGCTATCAAAAATCCCTATCCTTCTACAGCTAGATCACTATGAGCTCATGAAATATAACTTCAATGGTAATACAGCAATGCAGTCTTGTTTGATCATGTAGACAGAGTGGTGCATTAAATGGGTGCCTGCTGCATTGTAAATGTGACTGCGAGGGATTGTGCTTTAGTTTTACCATGAATTAGCCTCTGCAAATCCATACCATTTGCGCAAAACCCGCAATAGACTACCTTAATCCACTTACCTCCTTTATAACTGACTTGGCCAAAagcactgagaaagagagagaaatacaagcCACCATGCAGCATTACTATTTTTTTGTCACTAGAACACTGGAGATGTAAAGGAGTAGCCATTGGTTTTAACCACACATGTTACCAGAACAGGTTTGAGCAGCAATACGTGTTAATATGTGTTGCATCAAACACAGTTATTTTCTGAAAACCAAATGGAAATCATTCATTAGATTAATTGTGGCCAAATATATTTGTAATAAGATTAAAATAACACACCTTCGAAAAGTTCTAGAGCAATTCCAAAAAATGTACTCGAATGACATGAGTTCAGAAAATATCTCTCATTCTTGAAAACTGTAAACAAATAATTATAGACTGAGTGCTGTATCGAAATTATAGATTTTACCTGAGCATCTACAGTGTAGTGTGAGGTACAGTTAGGTTTAAATGGAATAGTCTGAAGCCAGTGGGAGTATCTCTTCAAGAGCCACTGAACACGCTGATTGGCAagtgtgtttttctgttgctcaATGAGATTTCAGTCTGTGTTTTCTCAGTGTTCAGTGGTGAATCGGTGTTTTCTGACTGATTCTGCATTTGTTTGATGATGTTTGTCCCCCGTGAGAGACTGTAGACAGGAACGCCTATTTTACTTCTTCAAATCCCCAGAATGTATCTGAGATAACTCAAGGAATCTGTAATTAATTTTGATGTTTTTGTCGAGGATATTTTAGTTGTGCAATTTAACTAAGTGTGTTTGGTGCATTATTTCTCAAGTTAAAAAGATGTCTGACGTGTTGCCGTATGTAAACACAGTCGGagctgctgggcaggtctgtctcactgtctattATATTGGACAGAGAGCAATCACCACAGCTGTTCACCCCATGTTAGTGGGCAAATGGACATCGTCAAATCAAAATTCAACCTTCATTTACCCGTTTTAGACGAGACTGACTTCATGACCAAAATTACCCTATTTACACTTTGCAGTCAATTTTGGCAGTAGAAtaactgtttctgactcatatcgatgcaaCATAGGCCATTTTAAAAGGGTTCATTGCTTTTGAAAGGCAGTCGCTCTTTAAGTTAAGACCAATCAAATAATTAGAGCAGACAGGTAATTAAAGGCCCATGCTGGCGTTAAACCCAAGAAAACAGGCCTCCCCAGCCAGGGACCAAAATAGCCTCAAGACTAAATGTGCTTAAAATCCAAAGGATTCCACACTCTCTGAACAATCAGCACACAGACAGTCACTATGCAGGTTAGCTGTAGCTGCTGCTAGTGAGAGGATAATTATGCCTAGAGCTCTTCAAGCTTGAGGTGACATGATGCTATATAGTGAGAACCATTACTAGGTTTGTGCACTAAAATGAACGGGCTTTTAATGCCACCTTGCATGTATAGAAATGAGCATATCTCTGGCATGTTACAAATGCTCTACATTGTTGAGGACATCTCAATCAAATAATGCATTTTTTAAGGACTAATAAGACATGCAATTTAGTTTTGCCTGTTCAAATGGTTGACAATTTAAGAGAAAAGAGCAACTAGAAAACAAATTGTTGTCCTAATGTTGATGATATGTATTTGTCATTATATATTTTCATAACCCCTATATTTGCCATCACAATTTACTAAGACTACGCAGCGTTAAAATATATCTATGGGTTGAAATTCCCTAAGGATTCCTTTGTTTCCTCTCTTGGCCTACCTAGAATGCTCTCTCAAAATAAGAAGAGAATGTTTGGGAAATGACAAACGACAACCTACAGCTCTGGCATTGTTGGACTACGTTGACCAACTGCAGTAAAGTTGATGCAATGCATCTGTATTATAGATAATGTATATTTATTGGAGCTTAAGTTATGGTTTATTTATTTAGATAGAATCATAAAAAAAGAGGAACATGTTTATTTATTGAACTATTGGTGCCAATACTCTAAATATTCTAACTGTTGAATAAACTTAA

Function


NR:

description
neurturin-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021581734.2 True 3977 mRNA 0.40 2 19732869 19743641
Loading

Neighbor


gene id symbol gene type direction distance location
LOC110502937 ccl25 coding downstream 99811 19630376 ~ 19633058 (-)
LOC110502819 dpoe4 coding downstream 112675 19605164 ~ 19620194 (-)
LOC110502382 LOC106573549 coding downstream 194087 19536427 ~ 19538782 (-)
LOC110501969 LOC106573546 coding downstream 249546 19474588 ~ 19483323 (-)
LOC110501773 LOC106573544 coding downstream 268631 19452917 ~ 19464238 (-)
LOC110503449 LOC106611608 coding upstream 85684 19829325 ~ 19832397 (-)
LOC110503510 nduab coding upstream 92632 19836273 ~ 19838863 (-)
larp6b LOC106573560 coding upstream 97880 19841521 ~ 19844225 (-)
tmprss9 tmprss9 coding upstream 122241 19865882 ~ 19890280 (-)
LOC110504151 NA coding upstream 175924 19919565 ~ 19934801 (-)
G18922 NA non-coding downstream 42676 19689929 ~ 19690193 (-)
G18921 NA non-coding downstream 43293 19689354 ~ 19689576 (-)
G18918 NA non-coding downstream 46464 19685524 ~ 19686405 (-)
G18917 NA non-coding downstream 47716 19684895 ~ 19685153 (-)
G18906 NA non-coding downstream 63347 19669298 ~ 19669522 (-)
G18966 NA non-coding upstream 7816 19751457 ~ 19751810 (-)
G18981 NA non-coding upstream 33356 19776997 ~ 19809300 (-)
G19004 NA non-coding upstream 68331 19811972 ~ 19812249 (-)
G19006 NA non-coding upstream 71142 19814783 ~ 19815136 (-)
G19015 NA non-coding upstream 85185 19828826 ~ 19829049 (-)
mydgf LOC106573827 other downstream 847217 18876547 ~ 18888907 (-)
LOC110497762 LOC106573859 other downstream 1338009 18390123 ~ 18450517 (-)
LOC110497564 LOC106573866 other downstream 1637931 18089520 ~ 18098678 (-)
G16161 LOC106573901 other downstream 2475628 17255236 ~ 17257241 (-)
G20266 NA other upstream 1055479 20799120 ~ 20800008 (-)
LOC118945319 NA other upstream 1341657 21085298 ~ 21089250 (-)
LOC110507736 LOC106573601 other upstream 1792292 21535882 ~ 21565723 (-)
G21993 NA other upstream 2638229 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 3096204 22839845 ~ 22843305 (-)

Expression


LOC110503352(LOC106573557) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.8.
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LOC110503352(LOC106573557) Expression in each Bioproject

Bar chart with 18 bars.
LOC110503352(LOC106573557) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network