larp6b (LOC106573560)


Basic Information

Item Value
gene id larp6b
gene name LOC106573560
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19841521 ~ 19844225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582117.2
CATACATCAGACATGTCATTATCCAATGGTCAAGTTCTCTCAATTGTGACGTAAGGGGCACCAGAAATTAGAATTTCTAAAAATATTCCATGTCAACATGTGCGGTGGAGACCGGGGAAACGTCGGGCAAAGAGGATATCAGTCTCACAACATGTCTTCACCAACTGCAGACGTCTTCCGATGTGGCTTGCAAATGTATCAGCTGTCCCCAGATTCAAGGCGGCTTGGGTCATACACAGAGGACAGAACATATGATAGTTTGGATGGAAGTTCCACAGAGTTGACTGATGTGTTTGAAGAAGAGGACTGTATTCAGGATGAAGGCTGGAGTACCCCTGTTGTAGACCTGAAACAGAAAATTGCAGCTCGGCTAGAAAACTATCTTACCAATGAGAGCCTGTCTGAAGATGCCTTTTTACTGAAACATGTTCAGAGGAACAAGAAGGGCTACGTCAGTGTGAAGTTACTAACTTCATTCAAAAAGATCAGGGAGCTCACACGTGACTGGCGAACCACTCTGGCTGCGGCTCGCACCACGCAGCAGCTGGAAGTCAACGAGGAGGGAACCAAGGTGCGACGGAGGGACCCAGTGCCCGACTGGCTACTGTGTGTCCCCACCAGCAAGCTGCTGCTGGCCTGGAACCTCCTGGGAGGAGAGGACAACGATGAGGAGAGCGTAGCCCCGGGGGTGGAGCAGCAGAGCCTGATGGAGACAGCTATGAGACTATTTGGCTGCCACGGCACCATCACGTCCCTCCGCATCCTGCGCCCAGGGAAGGAGATCCCTGCCGAGCTCAAGAGGTATGCAAAGAAACACATGGAGCTGGGGCGTAAGGTGTGTGCCGTGGTGGAGTATGAGTACCTGGAGGGGGCACGGCGGGCCTATGAGGCCCTGCAGGCTGAAGAGCAGCTACAGGGGAACAGGGCTGTACGCGTGGTACTCCTAGGCAGCAGGGGCACCAGGAAGCCAAGGGGCAGCCAGGACCGCACAGAGGAAGAGTCTGAGGACGGCATCGAGAGTGTGTGCTCGAGGAAGCCCAACCGCAAGGGCAGACGCTACCCGGGCTACTCCCTGGAGGACTCTGCCCTCTACAGCTCATCTGAGTCAGACTTCGCCCCCGCCTCGCCCAGGCCCAACCGCAGGGTCACACGACCTCAGGCTCTGTACGGCAGCCCCCTGGCCATCCCCCGGGTGTCCTCCTTCCGCTCAGACCCCTACAAGAACCCAGTTTGTAGCCCTGTGGGGAGCCCCCTCCTGCCCCGTAAGCTGTTCCCCAATGGCCACACTCCGTCCCCGCTGGCCGCTCCAGAGATCAGCAGCAGCCCTGTATCCAGTGGCAATGGAAGCTTTGGCAGCAGGAGCAAGTGCTCCGGGGACTATTCCCAGGAAAGTTTGGGCTTTGTGGGGAGCCCCTGGGTCCAGCGTCGGAAGACTGCCGCCCAGACATTTTTTCCTGACAAAGGTGGGCCCCTCTCGCCTGGCCTGCCCAAGAGGCCACTGGGCGTGGTGGATGTGCTGCGCCAGCCGCTTGGCCCTGATGGCACTAAAGGCTTCTACAACTGCATTGGCAGGGGGAAGCTGGTAGTGCAGCAATGATAAAGCCTGGCGAAAATTACCTCTGCCCAAAGCAAGGAATGATTTGATCTTAATGTAACCACCATATAGTGTTTACAATTACTTTTGATTGTCTCAATGTTTATCTAaatgaaatggggggggggggggggtcacattgGTCAAACTTATGAAAATGTTATTTTGTATTGATTAATAAAGATTACGATGTACTTTCAACAGTTCTTATGTTATTTCCCTTTATGCCCAGTATGGACTAAAATTATTCCGACTATGCAATATCTCAGTACATTACTATTCTGGGGTGAAACATGGTTTCATTCCTGCCTCAACTGCTAAAGACACACGCATATATGGTTATCTGAACTTCCCTAGCATAACTTCTAATGTATGCGCCTCCACCAGGATAATGTTCTCAATGTGTCAAGTCCCACAGGGGCAATGGCCACTATAGTCTGTGTCAGGCACCATTCCCTGTGCCTGCATGTCTTCTAGTGGGCTATGTTCTACAAAGATagtattgtttttttctctcacactgccaagttatttttccaaataAATGGTGTATGAATAATTTATTCATGTAGCAGACTGCCCCGTTAAAGCATTCCTCATTGAACAGAAA

Function

NR:

description
la-related protein 6-like isoform X1

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K18733 LARP6; la-related protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582117.2 True 2204 mRNA 0.52 4 19841521 19844225

Neighbor

gene id symbol gene type direction distance location
LOC110503510 nduab coding downstream 2658 19836273 ~ 19838863 (-)
LOC110503449 LOC106611608 coding downstream 9124 19829325 ~ 19832397 (-)
LOC110503352 LOC106573557 coding downstream 97880 19732869 ~ 19743641 (-)
LOC110502937 ccl25 coding downstream 208463 19630376 ~ 19633058 (-)
LOC110502819 dpoe4 coding downstream 221327 19605164 ~ 19620194 (-)
tmprss9 tmprss9 coding upstream 21657 19865882 ~ 19890280 (-)
LOC110504151 NA coding upstream 75340 19919565 ~ 19934801 (-)
LOC110504304 LOC106573568 coding upstream 252173 20096398 ~ 20117301 (-)
LOC110505227 LOC106573572 coding upstream 335891 20180116 ~ 20187417 (-)
LOC110505456 LOC106573574 coding upstream 361351 20205576 ~ 20211949 (-)
G19030 LOC106573562 non-coding downstream 37 19839837 ~ 19841484 (-)
G19015 NA non-coding downstream 12472 19828826 ~ 19829049 (-)
G19006 NA non-coding downstream 26385 19814783 ~ 19815136 (-)
G19004 NA non-coding downstream 29272 19811972 ~ 19812249 (-)
G18981 NA non-coding downstream 32221 19776997 ~ 19809300 (-)
G19032 NA non-coding upstream 1407 19845632 ~ 19845952 (-)
G19034 NA non-coding upstream 9900 19854125 ~ 19854347 (-)
G19038 NA non-coding upstream 12744 19856969 ~ 19857241 (-)
G19089 NA non-coding upstream 20453 19864678 ~ 19865605 (-)
mydgf LOC106573827 other downstream 955869 18876547 ~ 18888907 (-)
LOC110497762 LOC106573859 other downstream 1446661 18390123 ~ 18450517 (-)
LOC110497564 LOC106573866 other downstream 1746583 18089520 ~ 18098678 (-)
G16161 LOC106573901 other downstream 2584280 17255236 ~ 17257241 (-)
G20266 NA other upstream 954895 20799120 ~ 20800008 (-)
LOC118945319 NA other upstream 1241073 21085298 ~ 21089250 (-)
LOC110507736 LOC106573601 other upstream 1691708 21535882 ~ 21565723 (-)
G21993 NA other upstream 2537645 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 2995620 22839845 ~ 22843305 (-)

Expression


Co-expression Network