LOC110505227 (LOC106573572)


Basic Information

Item Value
gene id LOC110505227
gene name LOC106573572
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 20180116 ~ 20187417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584354.1
ATGTCGACCGAGGCCGCTGCTCCGGAGAAACCAGGCCAGGGGGAAATTAACGGCAAGGCCAAGCATGAACCCAGTGTCAGGAAGGAAAGGCCCCAGAAGCGTGGAGGTGGTCGCTTTGAACCCTATGGAAACCCATCAAAGAGATACCGTGTGTTTGTCAGCAACATTCCATATGATGTGAAATGGCAGGCACTCAAAGACCTAATGAAAGAAAAAGTGGGTGAGGTAACGTACGTGGAACACTTAATGGACGGAGAAGGCAAATCGAGGGGTTGTGCGGTTGTTGAGTTCAGGACTGAGGAACTGATGAAGAAGGCTGTGGAGAAGGTCAACAAGCACAACCTGAATGGGCGGCCCCTGAAGGTCAAAGAGGACCCAGATGGTGTGATTGCCCAGAGGGATGCCCACAGGTCCCAGGGGGGTGGTGGACCCCCCGGTGGCCATGGTGGAATGAACATGGGCATGGATCGCATGAATATGGAGCGAATGAACATGGACCGCATGGGCCCAGGACCGGGCGCGCCACCCATGGTCAACATCCCTCCCAGCCTCATGAACAACTCCAACATCCCCAATGAGATCATCCACGGGCTGCAGGCTGGCAAGATTGGAAGCACTGTCTTTGTAGCTAATCTGGACTACAAGGTTGGCTGGAAGAAGCTGAAGGAGGTGTTTGGCATGGCAGGTGTAGTGGTGCGCACTGACATCCTGGAGGACAAAGATGGGAATAGCAGGGGCATGGGCACCGTCACCTTTGACATGCCTATTGAAGCTGTCCAAGCCGTCAGTATGTTCAACGGTCAACTGCTTTTCAACCGGGTCATGCATGTCAAGCTGGATGAGAAGTCCTTGCCAAAAGGAGACTTTGCACCACCTGAGAGACCCCCAGCACTACCCCGTGGCCTTAGTGGCATCGGGCTGGGACTTGGGCCTGGTGGCCAACCCATTGACGCCACCGCACTGaacagaggaggtggaggaatggGCAACATGGGACCTGGGGGCATGGATGGCATGGGCTTTGGTGGTGGCATGGGTAGAATGGGAGGCATGGATAACTTTGGTGGAATGAACAACATGGAGCGTTTTGGACCATCTGGAATGGGCAGGATGAATGAGATGGACCGTGGGCTTGGTGGTTCTTTTGACCGGGAGTTTGGTCGAAATGATATGGGCATGTCTCGCAATAATTTTGGCGAATCCTTTGAAAGAGGAATGGGTAGCTCACTGGGCATGGACCGCATGAGCTCTGGCATGGATCGCTTGGGTGGTGGAATGGACCGTCTGGGTGGAATGGAGCGCATggggatggagaggatggaccgCGTGTCTGATCTGGACAGGCTAGGGGGGTCTGGCTTTGACAGGATGGGCTCTGGGCTGGACCGGCTGGGGCCCAGTATGGACAGGCTTGGTTCTGGGCTGGACCGTATGAGCTCCAGTGTGGACCGCCTGGGCCCAGCTGGGTTTGACCGCCTAGGCCCGTCCAGTTTGGAACGTATGCCTGCTGGCCTGGACTTCCCCTCTCCCATGGGCATGGCGGACCGCATGGAGAGGATGGGAACCAACTTTGACCGCATGGGGTCAGCCGGTATTGACCGCTTCCCGGCCACCGGGCTTGACCGCATGGGCTCCTCCATGGACCGCATGGGCGCTGTCGGTGTTGGCGGCCAGTTTGACCGGCCAGCTGAGATGGAGCGTGGGGGCTTTGGAGGAAATGGCTTTGGGGGGGCCGGAGGTCCTGGAGCCAACGCCAGGAAGGGCTGCCAGATCTTTGTCAGAAATCTGCCCTTTGACTTCACCTGGAAAATGCTGAAGGATAACTTCAATACATGCGGTATTGTCCAATATGCTGACATCAAGATGGAGAATGGCAAGTCCAAGGGCTGTGGCGTGGTTCGCTTTGACAACCCGgagactgcagagagagcctgtcGCACCATGAATGGCTACAGGCTGAATGGAAGAGAGATCGATGTCAGAATCGACAGAAATGCGTAATCGTCCGGTGTCATTATGGCCCTGATATTTGCAGCCCTGTATCGACCTttccacatttcttgttttttagGCAATTGTAACTGCGCAAGTGTATTTTTAGTTAGTTCTCGTCCCTGCATAATTTGTGACCAAATTTAAATTTCTTTATATTTTACCCGTAATGCTTCATTCACTTCATTGCCTTTGATCTATAAGGTGTTTTGATAATAAATATCACCATTGGAA
>XM_021584517.2
GGAAAGGCCCCAGAAGCGTGGAGGTGGTCGCTTTGAACCCTATGGAAACCCATCAAAGAGATACCGTGTGTTTGTCAGCAACATTCCATATGATGTGAAATGGCAGGCACTCAAAGACCTAATGAAAGAAAAAGGGTTGTGCGGTTGTTGAGTTCAGGACTGAGGAACTGATGAAGAAGGCTGTGGAGAAGGTCAACAAGCACAACCTGAATGGGCGGCCCCTGAAGGTCAAAGAGGACCCAGATGGTGTGATTGCCCAGAGGGATGCCCACAGGTCCCAGGGGGGTGGTGGACCCCCCGGTGGCCATGGTGGAATGAACATGGGCATGGATCGCATGAATATGGAGCGAATGAACATGGACCGCATGGGCCCAGGACCGGGCGCGCCACCCATGGTCAACATCCCTCCCAGCCTCATGAACAACTCCAACATCCCCAATGAGATCATCCACGGGCTGCAGGCTGGCAAGATTGGAAGCACTGTCTTTGTAGCTAATCTGGACTACAAGGTTGGCTGGAAGAAGCTGAAGGAGGTGTTTGGCATGGCAGGTGTAGTGGTGCGCACTGACATCCTGGAGGACAAAGATGGGAATAGCAGGGGCATGGGCACCGTCACCTTTGACATGCCTATTGAAGCTGTCCAAGCCGTCAGTATGTTCAACGGTCAACTGCTTTTCAACCGGGTCATGCATGTCAAGCTGGATGAGAAGTCCTTGCCAAAAGGAGACTTTGCACCACCTGAGAGACCCCCAGCACTACCCCGTGGCCTTAGTGGCATCGGGCTGGGACTTGGGCCTGGTGGCCAACCCATTGACGCCACCGCACTGaacagaggaggtggaggaatggGCAACATGGGACCTGGGGGCATGGATGGCATGGGCTTTGGTGGTGGCATGGGTAGAATGGGAGGCATGGATAACTTTGGTGGAATGAACAACATGGAGCGTTTTGGACCATCTGGAATGGGCAGGATGAATGAGATGGACCGTGGGCTTGGTGGTTCTTTTGACCGGGAGTTTGGTCGAAATGATATGGGCATGTCTCGCAATAATTTTGGCGAATCCTTTGAAAGAGGAATGGGTAGCTCACTGGGCATGGACCGCATGAGCTCTGGCATGGATCGCTTGGGTGGTGGAATGGACCGTCTGGGTGGAATGGAGCGCATggggatggagaggatggaccgCGTGTCTGATCTGGACAGGCTAGGGGGGTCTGGCTTTGACAGGATGGGCTCTGGGCTGGACCGGCTGGGGCCCAGTATGGACAGGCTTGGTTCTGGGCTGGACCGTATGAGCTCCAGTGTGGACCGCCTGGGCCCAGCTGGGTTTGACCGCCTAGGCCCGTCCAGTTTGGAACGTATGCCTGCTGGCCTGGACTTCCCCTCTCCCATGGGCATGGCGGACCGCATGGAGAGGATGGGAACCAACTTTGACCGCATGGGGTCAGCCGGTATTGACCGCTTCCCGGCCACCGGGCTTGACCGCATGGGCTCCTCCATGGACCGCATGGGCGCTGTCGGTGTTGGCGGCCAGTTTGACCGGCCAGCTGAGATGGAGCGTGGGGGCTTTGGAGGAAATGGCTTTGGGGGGGCCGGAGGTCCTGGAGCCAACGCCAGGAAGGGCTGCCAGATCTTTGTCAGAAATCTGCCCTTTGACTTCACCTGGAAAATGCTGAAGGATAACTTCAATACATGCGGTATTGTCCAATATGCTGACATCAAGATGGAGAATGGCAAGTCCAAGGGCTGTGGCGTGGTTCGCTTTGACAACCCGgagactgcagagagagcctgtcGCACCATGAATGGCTACAGGCTGAATGGAAGAGAGATCGATGTCAGAATCGACAGAAATGCGTAA
>XM_021584436.2
GCAAAGGCACTCCTATGTAAAGTTGTTTTTTGACGAAAATGTGAAAAACCTGTCAGTTTACCACTTTTAGGTTAGAGTagtaacatgttcaactacttaagacattggctctAATCTAGGTTATACCTTTTAGATGTCGAGCAAATGAACAGCAACAAAAAATGTTATTTCACTTCTCAAACTCCAAACCCCGGCCTGGTCTGTTTCAAACGCGTTCTCGGAAGTCTCATGATGTtgtctctgggtttagaaactccgTTTCTTTgccatgataaaaaaaaaacagtgtaaACAAAATTGAAACTGAAACATTTTGCCATGTTTCGAACTGGTAACGGATTTATATATATTcaatcaaaaaaatatatatataattgtacTTTGATTCTGAGCGGTCGCCAGAGCCAAATTCCCAGCATGCTTCACTCTCCTTGGCAACCCAGCGAATAAATTGAAACGGGTGTATTCATCCGCCATTTCACCAACGTTAGCTTGTTGACTTGCAGCCCGTCGCTCCAAAAATACATTAAAACAGTTATTTATTCAATACTGCTAAAGTGAAGGAACACTCAAATTTAGACAATATTTTATCAGCGTTGTTGAGGTATTCTATTGACCAAAAATTAATTCCGTAACGAAACAGGATTAGCTAACTGCGCAAGAAGATGTCGACCGAGGCCGCTGCTCCGGAGAAACCAGGCCAGGGGGAAATTAACGGCAAGGCCAAGCATGAACCCAGTGTCAGGAAGGAAAGGCCCCAGAAGCGTGGAGGTGGTCGCTTTGAACCCTATGGAAACCCATCAAAGAGATACCGTGTGTTTGTCAGCAACATTCCATATGATGTGAAATGGCAGGCACTCAAAGACCTAATGAAAGAAAAAGTGGGTGAGGTAACGTACGTGGAACACTTAATGGACGGAGAAGGCAAATCGAGGGGTTGTGCGGTTGTTGAGTTCAGGACTGAGGAACTGATGAAGAAGGCTGTGGAGAAGGTCAACAAGCACAACCTGAATGGGCGGCCCCTGAAGGTCAAAGAGGACCCAGATGGTGTGATTGCCCAGAGGGATGCCCACAGGTCCCAGGGGGGTGGTGGACCCCCCGGTGGCCATGGTGGAATGAACATGGGCATGGATCGCATGAATATGGAGCGAATGAACATGGACCGCATGGGCCCAGGACCGGGCGCGCCACCCATGGTCAACATCCCTCCCAGCCTCATGAACAACTCCAACATCCCCAATGAGATCATCCACGGGCTGCAGGCTGGCAAGATTGGAAGCACTGTCTTTGTAGCTAATCTGGACTACAAGGTTGGCTGGAAGAAGCTGAAGGAGGTGTTTGGCATGGCAGGTGTAGTGGTGCGCACTGACATCCTGGAGGACAAAGATGGGAATAGCAGGGGCATGGGCACCGTCACCTTTGACATGCCTATTGAAGCTGTCCAAGCCGTCAGTATGTTCAACGGTCAACTGCTTTTCAACCGGGTCATGCATGTCAAGCTGGATGAGAAGTCCTTGCCAAAAGGAGACTTTGCACCACCTGAGAGACCCCCAGCACTACCCCGTGGCCTTAGTGGCATCGGGCTGGGACTTGGGCCTGGTGGCCAACCCATTGACGCCACCGCACTGaacagaggaggtggaggaatggGCAACATGGGACCTGGGGGCATGGATAACTTTGGTGGAATGAACAACATGGAGCGTTTTGGACCATCTGGAATGGGCAGGATGAATGAGATGGACCGTGGGCTTGGTGGTTCTTTTGACCGGGAGTTTGGTCGAAATGATATGGGCATGTCTCGCAATAATTTTGGCGAATCCTTTGAAAGAGGAATGGGTAGCTCACTGGGCATGGACCGCATGAGCTCTGGCATGGATCGCTTGGGTGGTGGAATGGACCGTCTGGGTGGAATGGAGCGCATggggatggagaggatggaccgCGTGTCTGATCTGGACAGGCTAGGGGGGTCTGGCTTTGACAGGATGGGCTCTGGGCTGGACCGGCTGGGGCCCAGTATGGACAGGCTTGGTTCTGGGCTGGACCGTATGAGCTCCAGTGTGGACCGCCTGGGCCCAGCTGGGTTTGACCGCCTAGGCCCGTCCAGTTTGGAACGTATGCCTGCTGGCCTGGACTTCCCCTCTCCCATGGGCATGGCGGACCGCATGGAGAGGATGGGAACCAACTTTGACCGCATGGGGTCAGCCGGTATTGACCGCTTCCCGGCCACCGGGCTTGACCGCATGGGCTCCTCCATGGACCGCATGGGCGCTGTCGGTGTTGGCGGCCAGTTTGACCGGCCAGCTGAGATGGAGCGTGGGGGCTTTGGAGGAAATGGCTTTGGGGGGGCCGGAGGTCCTGGAGCCAACGCCAGGAAGGGCTGCCAGATCTTTGTCAGAAATCTGCCCTTTGACTTCACCTGGAAAATGCTGAAGGATAACTTCAATACATGCGGTATTGTCCAATATGCTGACATCAAGATGGAGAATGGCAAGTCCAAGGGCTGTGGCGTGGTTCGCTTTGACAACCCGgagactgcagagagagcctgtcGCACCATGAATGGCTACAGGCTGAATGGAAGAGAGATCGATGTCAGAATCGACAGAAATGCGTAA

Function

NR:

description
heterogeneous nuclear ribonucleoprotein M-like isoform X2

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12887 HNRNPM; heterogeneous nuclear ribonucleoprotein M

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584354.1 False 2226 mRNA 0.54 15 20180116 20186752
XM_021584517.2 False 1865 mRNA 0.56 13 20180341 20185873
XM_021584436.2 True 2621 mRNA 0.51 14 20180341 20187417

Neighbor

gene id symbol gene type direction distance location
LOC110504304 LOC106573568 coding downstream 62815 20096398 ~ 20117301 (-)
LOC110504151 NA coding downstream 245315 19919565 ~ 19934801 (-)
tmprss9 tmprss9 coding downstream 289836 19865882 ~ 19890280 (-)
larp6b LOC106573560 coding downstream 335891 19841521 ~ 19844225 (-)
LOC110503510 nduab coding downstream 341253 19836273 ~ 19838863 (-)
LOC110505456 LOC106573574 coding upstream 18159 20205576 ~ 20211949 (-)
LOC110505628 LOC106573575 coding upstream 25503 20212920 ~ 20216964 (-)
LOC110505771 LOC106573576 coding upstream 39770 20227187 ~ 20310115 (-)
gpx4a LOC106573579 coding upstream 124386 20311803 ~ 20318748 (-)
LOC110505853 LOC106573580 coding upstream 132957 20320374 ~ 20362066 (-)
G19968 NA non-coding downstream 7275 20172534 ~ 20172841 (-)
G19967 NA non-coding downstream 8075 20171752 ~ 20172041 (-)
G19960 NA non-coding downstream 10217 20145355 ~ 20169899 (-)
G19961 NA non-coding downstream 26646 20152650 ~ 20153470 (-)
G19959 NA non-coding downstream 37506 20142347 ~ 20142610 (-)
G19984 NA non-coding upstream 13959 20201376 ~ 20204091 (-)
G19994 NA non-coding upstream 43981 20231398 ~ 20231759 (-)
G19999 NA non-coding upstream 53103 20240520 ~ 20240774 (-)
G20000 NA non-coding upstream 55957 20243374 ~ 20243645 (-)
G20001 NA non-coding upstream 56421 20243838 ~ 20244181 (-)
LOC110502937 ccl25 other downstream 547499 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 1294464 18876547 ~ 18888907 (-)
LOC110497762 LOC106573859 other downstream 1785256 18390123 ~ 18450517 (-)
LOC110497564 LOC106573866 other downstream 2085178 18089520 ~ 18098678 (-)
G16161 LOC106573901 other downstream 2922875 17255236 ~ 17257241 (-)
G20266 NA other upstream 611703 20799120 ~ 20800008 (-)
LOC118945319 NA other upstream 897881 21085298 ~ 21089250 (-)
LOC110507736 LOC106573601 other upstream 1348516 21535882 ~ 21565723 (-)
G21993 NA other upstream 2194453 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 2652428 22839845 ~ 22843305 (-)

Expression


Co-expression Network