LOC110505456 (LOC106573574)


Basic Information

Item Value
gene id LOC110505456
gene name LOC106573574
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 20205576 ~ 20211949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965841.1
cttaagtaagcaaagagaaactacttacgacatgaaggacaatgattcAACACACCTGTGTAAGgtatatttgaccaagaaggagagtgatggagtgctgcatcagatgacctggtctccacaatctcccgacctcaaccaaattgtgatggtttgggatgagtcggaccgcagagttataggaaaagcaggcaacagTCGTTGGGCCTAACTGCTCTCACCTGAGGGAGCTGAGTCTGCTCCCCCATAATCCCTTTGACCCCTGACTTTTGACCCCTGGACGGTGTAACCATGACGACGGGGGATTGTTGCCACCTCCCGGGCTCCCTGTGCGACTGCACTGGCAACGCTGGCCTGTCCAAAAGCGTGGAGGAGTCGGATAACTGCAGAGCGCAGTATGTCACCCAGGTCACAGCCAAAGATGGGCGGCTGCTCTCCACCGTCATCAAACCTTTGAGCACACAGAGcgaTGGGCCAATTTGCCGGATCTGCCACGAGGGGGCCAACGGCGAGGGGCTTCTGTCCCCCTGCAACTGCACAGGGACTCTGGGCACGGTGCACAAGAGCTGCCTGGAGAAGTGGCTCTCCTCCTCCAACACCAGCTACTGTGAGCTGTGCCACACAGAGTTCACCATTGAGCGCAGGCCCAAGCCCCTCACAGAGGTAACAAAGTGGCTGCGGGACCCGGGCCCTCGTAACGAGAAGCGCACATTGTTCTGTGACATGGTGTGCTTCCTATTAATCACGCCCCTGGCAGCCATCTCTGGCTGGCTGTGTCTGAGGGGAGCCCAAGATCACCTGCACTTCAACAGCAGACTGGAGGCCTTAGGCCTCATCGCCCTCACCATCGCCCTTTTCACAATCTACGTCCTCTGGACTCTGGTATCATTCCGCTACCACTGTCAGCTCTACTCTGAGTGGAGACGAACCCATCAGAAAGTACGCCTCCTCCTTCCCGACGCAAAGGGGCGGCATTCTAACCAGCATTCCTTGCTCTCCACCAAGCTGCTGAAAAAAACAGCAGACGAGACTATAGTATGAGGTCAAAGGTGGGAAGATTTGAAGTTGGTGTTCTTTGGGTGCTGGAGGTTCTCAATGAAAAAGCACGTCTCCATTCAGAGCCCAAGCTCTTTTTCTAAAATCCGTTTTTCCTATGTGTGTCATCATCGTCAGCACTTCTTTTTTATTTTGTCGTCTGAGCCTCTGGTGGTGTTTTTTTTGTGATCTGGTAAAGAAACCAGTATTTTAAGAGACCAGTGATTACCGTGCAGTATGGTGTTTCTGAAGGTTTGGAAAAGGGCAGTTGATTGGATGGGTCTCCGCTGTGCGCTGCAAAGGGACAACATAGGATTCATTGGACAGATGCTCAGTGGAGATGGCTGCTGAAGCTTTAAGACCAAACCCTCTAGGGGTTAAGTGGACAATTGCCACTTTCTCCTCCCTAATTTCCTTCACAGCCGTCTCTAAAAGTGTAGCATGGATCGTTGACGCTGATCTACGGCGATCCATCCAGCGGTTGGTTCCCTAACCACTGAGTGTAGAAGTAAGAAGCTTAAAGCTTTCATTCCTGTTTACCAGCCAAAGGCTATTAGACTGGGGGGATTATAGATGCTTATGACATTGCTACACAAGCCAGTTGACTCCCTTCAATTCAGCTTCATCTGTTTTCCTCCTTGGTGTGAGCAGGAATTTTGTTCATAAAGATGGAGATTGTGCAATAAAACACTGGACACGGTTTCCTCTCACAGTACGTGATGAGACTGCTACCAACATGCACAATTTTG
>XM_021584722.2
TTGAGCGGAAACGCCGTCGGTGgagggtttccactagttaccacagccttAATGTCGAAATTGGCTATATTTTCAAAATCCAGAACTAAAATAtgcttaatttaaggttaggattaggcatACATTTagcagtggttaaggttaggtttaaaatctgattttaagaaaataaattgtagaataggcggggtttatgactttgtggctgtgtgaCGACCGTGAGGAGGCTACCAAAGAAAATGCTATTGTTGTCGTTTGTCAGCAAGACGATAACTGGCAAAGATACTTAGCTATCCGAAAGGAAGTATCAATGAGTATTTTATATATTGACAACGCCACATATTACATGTTAAAATGAAAAAAGGAGGAATGCTTCGTTGGGCCTAACTGCTCTCACCTGAGGGAGCTGAGTCTGCTCCCCCATAATCCCTTTGACCCCTGACTTTTGACCCCTGGACGGTGTAACCATGACGACGGGGGATTGTTGCCACCTCCCGGGCTCCCTGTGCGACTGCACTGGCAACGCTGGCCTGTCCAAAAGCGTGGAGGAGTCGGATAACTGCAGAGCGCAGTATGTCACCCAGGTCACAGCCAAAGATGGGCGGCTGCTCTCCACCGTCATCAAACCTTTGAGCACACAGAGcgaTGGGCCAATTTGCCGGATCTGCCACGAGGGGGCCAACGGCGAGGGGCTTCTGTCCCCCTGCAACTGCACAGGGACTCTGGGCACGGTGCACAAGAGCTGCCTGGAGAAGTGGCTCTCCTCCTCCAACACCAGCTACTGTGAGCTGTGCCACACAGAGTTCACCATTGAGCGCAGGCCCAAGCCCCTCACAGAGGTAACAAAGTGGCTGCGGGACCCGGGCCCTCGTAACGAGAAGCGCACATTGTTCTGTGACATGGTGTGCTTCCTATTAATCACGCCCCTGGCAGCCATCTCTGGCTGGCTGTGTCTGAGGGGAGCCCAAGATCACCTGCACTTCAACAGCAGACTGGAGGCCTTAGGCCTCATCGCCCTCACCATCGCCCTTTTCACAATCTACGTCCTCTGGACTCTGGTATCATTCCGCTACCACTGTCAGCTCTACTCTGAGTGGAGACGAACCCATCAGAAAGTACGCCTCCTCCTTCCCGACGCAAAGGGGCGGCATTCTAACCAGCATTCCTTGCTCTCCACCAAGCTGCTGAAAAAAACAGCAGACGAGACTATAGTATGAGGTCAAAGGTGGGAAGATTTGAAGTTGGTGTTCTTTGGGTGCTGGAGGTTCTCAATGAAAAAGCACGTCTCCATTCAGAGCCCAAGCTCTTTTTCTAAAATCCGTTTTTCCTATGTGTGTCATCATCGTCAGCACTTCTTTTTTATTTTGTCGTCTGAGCCTCTGGTGGTGTTTTTTTTGTGATCTGGTAAAGAAACCAGTATTTTAAGAGACCAGTGATTACCGTGCAGTATGGTGTTTCTGAAGGTTTGGAAAAGGGCAGTTGATTGGATGGGTCTCCGCTGTGCGCTGCAAAGGGACAACATAGGATTCATTGGACAGATGCTCAGTGGAGATGGCTGCTGAAGCTTTAAGACCAAACCCTCTAGGGGTTAAGTGGACAATTGCCACTTTCTCCTCCCTAATTTCCTTCACAGCCGTCTCTAAAAGTGTAGCATGGATCGTTGACGCTGATCTACGGCGATCCATCCAGCGGTTGGTTCCCTAACCACTGAGTGTAGAAGTAAGAAGCTTAAAGCTTTCATTCCTGTTTACCAGCCAAAGGCTATTAGACTGGGGGGATTATAGATGCTTATGACATTGCTACACAAGCCAGTTGACTCCCTTCAATTCAGCTTCATCTGTTTTCCTCCTTGGTGTGAGCAGGAATTTTGTTCATAAAGATGGAGATTGTGCAATAAAACACTGGACACGGTTTCCTCTCACAGTACGTGATGAGACTGCTACCAACATGCACAATTTTG
>XM_021584887.2
TTGAGCGGAAACGCCGTCGGTGgagggtttccactagttaccacagccttAATGTCGAAATTGGCTATATTTTCAAAATCCAGAACTAAAATAtgcttaatttaaggttaggattaggcatACATTTagcagtggttaaggttaggtttaaaatctgattttaagaaaataaattgtagaataggcggggtttatgactttgtggctgtgtgaCGACCGTGAGGAGGCTACCAAAGAAAATGCTATTGTTGTCGTTTGTCAGCAAGACGATAACTGGCAAAGATACTTAGCTATCCGAAAGGAAGTATCAATGAGTATTTTATATATTGACAACGCCACATATTACATGTTAAAATGAAAAAAGGAGGAATGCTTCGTTGGGCCTAACTGCTCTCACCTGAGGGAGCTGAGTCTGCTCCCCCATAATCCCTTTGACCCCTGACTTTTGACCCCTGGACGGTGTAACCATGACGACGGGGGATTGTTGCCACCTCCCGGGCTCCCTGTGCGACTGCACTGGCAACGCTGGCCTGTCCAAAAGCGTGGAGGAGTCGGATAACTGCAGAGCGCAGTATGTCACCCAGGTCACAGCCAAAGATGGGCGGCTGCTCTCCACCGTCATCAAACCTTTGAGCACACAGAGcgaTGGGCCAATTTGCCGGATCTGCCACGAGGGGGCCAACGGCGAGGGGCTTCTGTCCCCCTGCAACTGCACAGGGACTCTGGGCACGGTGCACAAGAGCTGCCTGGAGAAGTGGCTCTCCTCCTCCAACACCAGCTACTGTGAGCTGTGCCACACAGAGTTCACCATTGAGCGCAGGCCCAAGCCCCTCACAGAGTGGCTGCGGGACCCGGGCCCTCGTAACGAGAAGCGCACATTGTTCTGTGACATGGTGTGCTTCCTATTAATCACGCCCCTGGCAGCCATCTCTGGCTGGCTGTGTCTGAGGGGAGCCCAAGATCACCTGCACTTCAACAGCAGACTGGAGGCCTTAGGCCTCATCGCCCTCACCATCGCCCTTTTCACAATCTACGTCCTCTGGACTCTGGTATCATTCCGCTACCACTGTCAGCTCTACTCTGAGTGGAGACGAACCCATCAGAAAGTACGCCTCCTCCTTCCCGACGCAAAGGGGCGGCATTCTAACCAGCATTCCTTGCTCTCCACCAAGCTGCTGAAAAAAACAGCAGACGAGACTATAGTATGAGGTCAAAGGTGGGAAGATTTGAAGTTGGTGTTCTTTGGGTGCTGGAGGTTCTCAATGAAAAAGCACGTCTCCATTCAGAGCCCAAGCTCTTTTTCTAAAATCCGTTTTTCCTATGTGTGTCATCATCGTCAGCACTTCTTTTTTATTTTGTCGTCTGAGCCTCTGGTGGTGTTTTTTTTGTGATCTGGTAAAGAAACCAGTATTTTAAGAGACCAGTGATTACCGTGCAGTATGGTGTTTCTGAAGGTTTGGAAAAGGGCAGTTGATTGGATGGGTCTCCGCTGTGCGCTGCAAAGGGACAACATAGGATTCATTGGACAGATGCTCAGTGGAGATGGCTGCTGAAGCTTTAAGACCAAACCCTCTAGGGGTTAAGTGGACAATTGCCACTTTCTCCTCCCTAATTTCCTTCACAGCCGTCTCTAAAAGTGTAGCATGGATCGTTGACGCTGATCTACGGCGATCCATCCAGCGGTTGGTTCCCTAACCACTGAGTGTAGAAGTAAGAAGCTTAAAGCTTTCATTCCTGTTTACCAGCCAAAGGCTATTAGACTGGGGGGATTATAGATGCTTATGACATTGCTACACAAGCCAGTTGACTCCCTTCAATTCAGCTTCATCTGTTTTCCTCCTTGGTGTGAGCAGGAATTTTGTTCATAAAGATGGAGATTGTGCAATAAAACACTGGACACGGTTTCCTCTCACAGTACGTGATGAGACTGCTACCAACATGCACAATTTTG
>XM_036965805.1
TTGAGCGGAAACGCCGTCGGTGgagggtttccactagttaccacagccttAATGTCGAAATTGGCTATATTTTCAAAATCCAGAACTAAAATAtgcttaatttaaggttaggattaggcatACATTTagcagtggttaaggttaggtttaaaatctgattttaagaaaataaattgtagaataggcggggtttatgactttgtggctgtgtgaCGACCGTGAGGAGGCTACCAAAGAAAATGCTATTGTTGTCGTTTGTCAGCAAGACGATAACTGGCAAAGATACTTAGCTATCCGAAAGGAAGTATCAATGAGTATTTTATATATTGACAACGCCACATATTACATGTTAAAATGAAAAAAGGAGGAATGCTgacaatgattcAACACACCTGTGTAAGgtatatttgaccaagaaggagagtgatggagtgctgcatcagatgacctggtctccacaatctcccgacctcaaccaaattgtgatggtttgggatgagtcggaccgcagagttataggaaaagcaggcaacagTCGTTGGGCCTAACTGCTCTCACCTGAGGGAGCTGAGTCTGCTCCCCCATAATCCCTTTGACCCCTGACTTTTGACCCCTGGACGGTGTAACCATGACGACGGGGGATTGTTGCCACCTCCCGGGCTCCCTGTGCGACTGCACTGGCAACGCTGGCCTGTCCAAAAGCGTGGAGGAGTCGGATAACTGCAGAGCGCAGTATGTCACCCAGGTCACAGCCAAAGATGGGCGGCTGCTCTCCACCGTCATCAAACCTTTGAGCACACAGAGcgaTGGGCCAATTTGCCGGATCTGCCACGAGGGGGCCAACGGCGAGGGGCTTCTGTCCCCCTGCAACTGCACAGGGACTCTGGGCACGGTGCACAAGAGCTGCCTGGAGAAGTGGCTCTCCTCCTCCAACACCAGCTACTGTGAGCTGTGCCACACAGAGTTCACCATTGAGCGCAGGCCCAAGCCCCTCACAGAGGTAACAAAGTGGCTGCGGGACCCGGGCCCTCGTAACGAGAAGCGCACATTGTTCTGTGACATGGTGTGCTTCCTATTAATCACGCCCCTGGCAGCCATCTCTGGCTGGCTGTGTCTGAGGGGAGCCCAAGATCACCTGCACTTCAACAGCAGACTGGAGGCCTTAGGCCTCATCGCCCTCACCATCGCCCTTTTCACAATCTACGTCCTCTGGACTCTGGTATCATTCCGCTACCACTGTCAGCTCTACTCTGAGTGGAGACGAACCCATCAGAAAGTACGCCTCCTCCTTCCCGACGCAAAGGGGCGGCATTCTAACCAGCATTCCTTGCTCTCCACCAAGCTGCTGAAAAAAACAGCAGACGAGACTATAGTATGAGGTCAAAGGTGGGAAGATTTGAAGTTGGTGTTCTTTGGGTGCTGGAGGTTCTCAATGAAAAAGCACGTCTCCATTCAGAGCCCAAGCTCTTTTTCTAAAATCCGTTTTTCCTATGTGTGTCATCATCGTCAGCACTTCTTTTTTATTTTGTCGTCTGAGCCTCTGGTGGTGTTTTTTTTGTGATCTGGTAAAGAAACCAGTATTTTAAGAGACCAGTGATTACCGTGCAGTATGGTGTTTCTGAAGGTTTGGAAAAGGGCAGTTGATTGGATGGGTCTCCGCTGTGCGCTGCAAAGGGACAACATAGGATTCATTGGACAGATGCTCAGTGGAGATGGCTGCTGAAGCTTTAAGACCAAACCCTCTAGGGGTTAAGTGGACAATTGCCACTTTCTCCTCCCTAATTTCCTTCACAGCCGTCTCTAAAAGTGTAGCATGGATCGTTGACGCTGATCTACGGCGATCCATCCAGCGGTTGGTTCCCTAACCACTGAGTGTAGAAGTAAGAAGCTTAAAGCTTTCATTCCTGTTTACCAGCCAAAGGCTATTAGACTGGGGGGATTATAGATGCTTATGACATTGCTACACAAGCCAGTTGACTCCCTTCAATTCAGCTTCATCTGTTTTCCTCCTTGGTGTGAGCAGGAATTTTGTTCATAAAGATGGAGATTGTGCAATAAAACACTGGACACGGTTTCCTCTCACAGTACGTGATGAGACTGCTACCAACATGCACAATTTTG

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MARCH2-like isoform X1

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006897 endocytosis biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10657 MARCH2; E3 ubiquitin-protein ligase MARCH2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965841.1 False 1784 mRNA 0.51 6 20205576 20209324
XM_021584722.2 False 1960 mRNA 0.49 5 20205576 20211949
XM_021584887.2 False 1951 mRNA 0.49 5 20205576 20211949
XM_036965805.1 True 2121 mRNA 0.49 6 20205576 20211949

Neighbor

gene id symbol gene type direction distance location
LOC110505227 LOC106573572 coding downstream 18159 20180116 ~ 20187417 (-)
LOC110504304 LOC106573568 coding downstream 88275 20096398 ~ 20117301 (-)
LOC110504151 NA coding downstream 270775 19919565 ~ 19934801 (-)
tmprss9 tmprss9 coding downstream 315296 19865882 ~ 19890280 (-)
larp6b LOC106573560 coding downstream 361351 19841521 ~ 19844225 (-)
LOC110505628 LOC106573575 coding upstream 971 20212920 ~ 20216964 (-)
LOC110505771 LOC106573576 coding upstream 15238 20227187 ~ 20310115 (-)
gpx4a LOC106573579 coding upstream 99854 20311803 ~ 20318748 (-)
LOC110505853 LOC106573580 coding upstream 108425 20320374 ~ 20362066 (-)
LOC110506262 LOC106573581 coding upstream 156041 20367990 ~ 20481812 (-)
G19984 NA non-coding downstream 1485 20201376 ~ 20204091 (-)
G19968 NA non-coding downstream 32735 20172534 ~ 20172841 (-)
G19967 NA non-coding downstream 33535 20171752 ~ 20172041 (-)
G19960 NA non-coding downstream 35677 20145355 ~ 20169899 (-)
G19961 NA non-coding downstream 52106 20152650 ~ 20153470 (-)
G19994 NA non-coding upstream 19449 20231398 ~ 20231759 (-)
G19999 NA non-coding upstream 28571 20240520 ~ 20240774 (-)
G20000 NA non-coding upstream 31425 20243374 ~ 20243645 (-)
G20001 NA non-coding upstream 31889 20243838 ~ 20244181 (-)
G20002 NA non-coding upstream 35775 20247724 ~ 20248006 (-)
LOC110502937 ccl25 other downstream 572959 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 1319924 18876547 ~ 18888907 (-)
LOC110497762 LOC106573859 other downstream 1810716 18390123 ~ 18450517 (-)
LOC110497564 LOC106573866 other downstream 2110638 18089520 ~ 18098678 (-)
G16161 LOC106573901 other downstream 2948335 17255236 ~ 17257241 (-)
G20266 NA other upstream 587171 20799120 ~ 20800008 (-)
LOC118945319 NA other upstream 873349 21085298 ~ 21089250 (-)
LOC110507736 LOC106573601 other upstream 1323984 21535882 ~ 21565723 (-)
G21993 NA other upstream 2169921 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 2627896 22839845 ~ 22843305 (-)

Expression


Co-expression Network