LOC110532071 (LOC106573588)


Basic Information

Item Value
gene id LOC110532071
gene name LOC106573588
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 20988056 ~ 21005209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967735.1
attttagctaacccttttcttttttttattgctAAGCAGGTTCAACTATTTATTTTCTACATTAGAAAATACATTATTATTGTGATTGAGGTATATTTTTACTAGGCGTCTTCCACCACTTTTGGCATAGTTTGTAACGGGATCCAAAGAAATCGTGAACAGACATCTATTCGAGCCAATGAAACCGCTTGTTTTCTGCGGTTTGTGGAACCCAAATCCAGGCCTGCCTACCTACAGTAGCATAATGTCATCAGCTCAGAGACGGAAAAGGAAGCGTCCCCCCCTAGTTAAATGAAAGTCAATGAACTAAGAAGACCAGACCCATCTGCTATTGCATTGGTGTCAGTTAAGTAGACCTGAACTTACAATTTATGTTCAATGGTAAACAATCTTAATTTATCTGCCATCTTTGATCAGTTGTCAAGACACTTAAACTACACATGTGTGTCGCTAACACTACGAACATATACTTCAGTTCGTTGAAGAGAGATGgcGCTAATTGGAGTGCAGCTGGTGGTCAGCTTGCTGGCTGCTAGCATCATGCAGAGAATGACTCCACACTGTTCTTTTGCCCGCTGGCTTCTATGCAATGGCAGTCTATTCCGGTTCAAACACCCCTCTGAAGGAGAGCTGTGCGCCCTGGCAGGCAAACAGATGCCCAGCAAGCCCAGCAGGAGAGACAGGTGTGAGCTGAGGAGACAGAATGGGGACAGCAAGCCTCTCACAGTGCCGAAGGACATCGACCTTAACTTAGAAAAAGCTCCAATTGGTGTCCTTGATGCCCTTGTACTGCGATTCTTCCTGGAGTACCAGTGGTTGATTGACTTTGCAGTGTATGCGATGGGCATCTACCTTTTCACTGAGGGCTACTTCTATGTAGTTGACCCTGCCATGGAGGTCCACATTGGGGCCTTCTGGTGTGTGCTGactgttctctgctgcctGAAAACCCTCCACTCCCTGATGGGCCACTATTTCCGGTCTGACGAGGGGGGTGAGCGTTCAGTGTGCTTGGCCTTTGGTTTCCTATCTCTGCTGGTGGCCATGTTGGTGCTAGTGGTCAGAGAAGACTACCTGGAGTTTGGCCTGGAGCCTGGTTTTAACAGTCTTTTTGACAACCTTGAAGTTTTCGCAAAACAGCAAGGCTTTGCTGAGTGGTCAGTCCCGGTGACCAAGCTGACTGTGAAGTTGGGTCTGGCTGCCATCTGTGCTTTTATTGGTGCTTTGCTGGCCTTCCCTGGCCTCCGCCTAGCCCAGACCCACCTGGACGCAGTTCAGATGAACTCAGACCGCCCATTCATCCAGATTCTGTTGCACATTAGTTTTCTGGCTCCAGTGGTGGTGATCGTGTTGTGGATCAAACCCATCGCTAGGGACTTCCTGGGGAACGCTCCCATGGGGAAGACCTCGGTCACGCTTATGTCAAGCGCGATGTTTGACAGTGTTCGTCTGTGGACGGTGGTGGTGCTGTGCTGCCTGAGGCTGGCCCTGACCCGCTACCACATGCAGGCCTACCTCAACCTGTCCCAGAAGTGGGTGGACCAGATGAAGAAGGAGGCAGGATGCATCGCTGCCATCGACATCCAGAGGAAGGTGACCCGAGTGTTCTGCTACCTGACCATAGTCACCCTGCAGTACGTGATCCCtgttctactcctcctcttctctacccTGGCTCTGAAGGTCCTGGGTGACTTCTCATGGAGTGGTGCGGAGCAGGCTCCGGGGGTGACTCCTGCCCTGGTAATGCCAACGGTCACTCCCGTCCTGCCAGGGCTGGAGGAGGACGAGGATGGGGTGGAGTACATGGAGGAGGACATCCAGGCCACGGTGGCTCGTCTGACAGAGGGCTTCTCAGCCCTGCGCTCCGTCCTCACCCCACTCTTCTTCAGAGGCCTCTTTGCCTTCCTTACCTGGTGGGTGGCCGCCTGCCAGGTCATCAGCAGCCTGTTTGGCATCTACTTCCACCAGTACCTCATGCAGAACTGAGGAAGAATACACAGAACTACACTATCCACAATATCTAGCTAACACAAGCCCAGTGTGATGTAGGCAGGTAAAACTCTTTTAACACAACAGAAGGACAGGATGGGTGCTCTTGTCTTACTGTAACTAAGGTGTCACGGATGTAAAAAGAATGAAAAAAATACAAGGCTTTCTTCTGACACACTACTACTTTGTTGTCCTGGGACACAGATCATGTTGCCTGTGACTGCCTGGGGACTATGATGGAGATGCAGTATAATGGGTCAACTCTGTCCCTTGCTACTTAACACATTTATCTTATGCCAGTGTTAACCTTATTCATTTTTCATCACATAATATTGTTAAATGCTGCAAATGAGACTTTACTATTAGGAAAAAGGTACCACTACACTACAGCCTAGTTTGCTATTAGACAGATTCAgaagctcttgatggtttttaaAATTGTCGTCCTATAGTTCTGCTAATACCGTACCGATTGTCATGAACCCATGGAGTTCAGTCTATGTAGCAGTCATCACCACTTGTGTATGGATTGATCAAACTCGGGCCTCGCCTGTTCATTCTCCTTAATCATTTATATCCACTTTTAAAACGAAGCACAGAGGATCAGTTACTGTGTTTATTTAATGAAGGGATTCAAAGAGGAATTCCAAGTGCCTGGAAACTCAGGGATTTTAAGTCAATGATATGATCTTTTTTCATGAAATGTTTTATTCTCTGTAAAATGGTAGACTGGTGATAGACATTTATCTGTATCATTTGATAACACTCCGGCCCAGACTGGATTTGGCCAAATGTACCTGTTATCAACCATCTTTCAGTCTCAGCAAAGTTTGTTAGTTGTTTGAACAAGGTACTTTGTCTTTTATTGCTGCCAAACTATAATTTACAGATGTAGGCTTATAACAAATCTCACTTAACTTAAACCTAGGTCTGAAATGCGTTGCTGATTGTAGTGTCAACGTtttgttttttaatgtatttatttctactctattgCCCCTGGTCATATTGTGTTGGAAAGGTACAGGTGTCGTGCTGCTGTACGTTTGGGTCATGGTTTATGGCACGTGATTTATTTGATTGAATGTTCGCTAATCATTTCACGGTGTGTGTGGTTTGTATGAAGATGCTGTTTTTACAATTAAGAGACTTCTGAATGCATGGCGGTAACTTTAGTTGTGTACAAGTGTTTTTATTTGGTTGTGTGGCTTAATAAAACAATAATTTAATATT
>XM_036967785.1
attttagctaacccttttcttttttttattgctAAGCAGGTTCAACTATTTATTTTCTACATTAGAAAATACATTATTATTGTGATTGAGGTATATTTTTACTAGGCGTCTTCCACCACTTTTGGCATAGTTTGTAACGGGATCCAAAGAAATCGTGAACAGACATCTATTCGAGCCAATGAAACCGCTTGTTTTCTGCGGTTTGTGGAACCCAAATCCAGGCCTGCCTACCTACAGTAGCATAATGTCATCAGCTCAGAGACGGAAAAGGAAGCGTCCCCCCCTAGTTAAATGAAAGTCAATGAACTAAGAAGACCAGACCCATCTGCTATTGCATTGGTGTCAGTTAAGTAGACCTGAACTTACAATTTATGTTCAATGGTAAACAATCTTAATTTATCTGCCATCTTTGATCAGTTGTCAAGACACTTAAACTACACATGTGTGTCGCTAACACTACGAACATATACTTCAGTTCGTTGAAGAGAGATGgcGCTAATTGGAGTGCAGCTGGTGGTCAGCTTGCTGGCTGCTAGCATCATGCAGAGAATGACTCCACACTGTTCTTTTGCCCGCTGGCTTCTATGCAATGGCAGTCTATTCCGGTTCAAACACCCCTCTGAAGGAGAGCTGTGCGCCCTGGCAGGCAAACAGATGCCCAGCAAGCCCAGCAGGAGAGACAGGAGACAGAATGGGGACAGCAAGCCTCTCACAGTGCCGAAGGACATCGACCTTAACTTAGAAAAAGCTCCAATTGGTGTCCTTGATGCCCTTGTACTGCGATTCTTCCTGGAGTACCAGTGGTTGATTGACTTTGCAGTGTATGCGATGGGCATCTACCTTTTCACTGAGGGCTACTTCTATGTAGTTGACCCTGCCATGGAGGTCCACATTGGGGCCTTCTGGTGTGTGCTGactgttctctgctgcctGAAAACCCTCCACTCCCTGATGGGCCACTATTTCCGGTCTGACGAGGGGGGTGAGCGTTCAGTGTGCTTGGCCTTTGGTTTCCTATCTCTGCTGGTGGCCATGTTGGTGCTAGTGGTCAGAGAAGACTACCTGGAGTTTGGCCTGGAGCCTGGTTTTAACAGTCTTTTTGACAACCTTGAAGTTTTCGCAAAACAGCAAGGCTTTGCTGAGTGGTCAGTCCCGGTGACCAAGCTGACTGTGAAGTTGGGTCTGGCTGCCATCTGTGCTTTTATTGGTGCTTTGCTGGCCTTCCCTGGCCTCCGCCTAGCCCAGACCCACCTGGACGCAGTTCAGATGAACTCAGACCGCCCATTCATCCAGATTCTGTTGCACATTAGTTTTCTGGCTCCAGTGGTGGTGATCGTGTTGTGGATCAAACCCATCGCTAGGGACTTCCTGGGGAACGCTCCCATGGGGAAGACCTCGGTCACGCTTATGTCAAGCGCGATGTTTGACAGTGTTCGTCTGTGGACGGTGGTGGTGCTGTGCTGCCTGAGGCTGGCCCTGACCCGCTACCACATGCAGGCCTACCTCAACCTGTCCCAGAAGTGGGTGGACCAGATGAAGAAGGAGGCAGGATGCATCGCTGCCATCGACATCCAGAGGAAGGTGACCCGAGTGTTCTGCTACCTGACCATAGTCACCCTGCAGTACGTGATCCCtgttctactcctcctcttctctacccTGGCTCTGAAGGTCCTGGGTGACTTCTCATGGAGTGGTGCGGAGCAGGCTCCGGGGGTGACTCCTGCCCTGGTAATGCCAACGGTCACTCCCGTCCTGCCAGGGCTGGAGGAGGACGAGGATGGGGTGGAGTACATGGAGGAGGACATCCAGGCCACGGTGGCTCGTCTGACAGAGGGCTTCTCAGCCCTGCGCTCCGTCCTCACCCCACTCTTCTTCAGAGGCCTCTTTGCCTTCCTTACCTGGTGGGTGGCCGCCTGCCAGGTCATCAGCAGCCTGTTTGGCATCTACTTCCACCAGTACCTCATGCAGAACTGAGGAAGAATACACAGAACTACACTATCCACAATATCTAGCTAACACAAGCCCAGTGTGATGTAGGCAGGTAAAACTCTTTTAACACAACAGAAGGACAGGATGGGTGCTCTTGTCTTACTGTAACTAAGGTGTCACGGATGTAAAAAGAATGAAAAAAATACAAGGCTTTCTTCTGACACACTACTACTTTGTTGTCCTGGGACACAGATCATGTTGCCTGTGACTGCCTGGGGACTATGATGGAGATGCAGTATAATGGGTCAACTCTGTCCCTTGCTACTTAACACATTTATCTTATGCCAGTGTTAACCTTATTCATTTTTCATCACATAATATTGTTAAATGCTGCAAATGAGACTTTACTATTAGGAAAAAGGTACCACTACACTACAGCCTAGTTTGCTATTAGACAGATTCAgaagctcttgatggtttttaaAATTGTCGTCCTATAGTTCTGCTAATACCGTACCGATTGTCATGAACCCATGGAGTTCAGTCTATGTAGCAGTCATCACCACTTGTGTATGGATTGATCAAACTCGGGCCTCGCCTGTTCATTCTCCTTAATCATTTATATCCACTTTTAAAACGAAGCACAGAGGATCAGTTACTGTGTTTATTTAATGAAGGGATTCAAAGAGGAATTCCAAGTGCCTGGAAACTCAGGGATTTTAAGTCAATGATATGATCTTTTTTCATGAAATGTTTTATTCTCTGTAAAATGGTAGACTGGTGATAGACATTTATCTGTATCATTTGATAACACTCCGGCCCAGACTGGATTTGGCCAAATGTACCTGTTATCAACCATCTTTCAGTCTCAGCAAAGTTTGTTAGTTGTTTGAACAAGGTACTTTGTCTTTTATTGCTGCCAAACTATAATTTACAGATGTAGGCTTATAACAAATCTCACTTAACTTAAACCTAGGTCTGAAATGCGTTGCTGATTGTAGTGTCAACGTtttgttttttaatgtatttatttctactctattgCCCCTGGTCATATTGTGTTGGAAAGGTACAGGTGTCGTGCTGCTGTACGTTTGGGTCATGGTTTATGGCACGTGATTTATTTGATTGAATGTTCGCTAATCATTTCACGGTGTGTGTGGTTTGTATGAAGATGCTGTTTTTACAATTAAGAGACTTCTGAATGCATGGCGGTAACTTTAGTTGTGTACAAGTGTTTTTATTTGGTTGTGTGGCTTAATAAAACAATAATTTAATATT

Function

NR:

description
transmembrane protein 161A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967735.1 False 3225 mRNA 0.46 12 20988056 21005209
XM_036967785.1 True 3213 mRNA 0.46 12 20988056 21005209

Neighbor

gene id symbol gene type direction distance location
tmem221 LOC106573585 coding downstream 55604 20927809 ~ 20932452 (-)
rfxank rfxank coding downstream 65123 20919626 ~ 20922933 (-)
LOC110506380 NA coding downstream 86017 20885537 ~ 20902039 (-)
LOC110532063 ncan coding downstream 145145 20586586 ~ 20842911 (-)
trnaa-agc NA coding downstream 460232 20527752 ~ 20527824 (-)
LOC118945319 NA coding upstream 82159 21085298 ~ 21089250 (-)
LOC110507379 LOC106573593 coding upstream 122978 21128187 ~ 21133777 (-)
LOC110511465 LOC106573796 coding upstream 187135 21192344 ~ 21193157 (-)
LOC118945781 NA coding upstream 227573 21232782 ~ 21242022 (-)
LOC110507674 LOC105011525 coding upstream 352526 21357735 ~ 21362790 (-)
G20307 NA non-coding downstream 124863 20862022 ~ 20863193 (-)
G20299 NA non-coding downstream 135173 20852451 ~ 20852883 (-)
G20273 NA non-coding downstream 178471 20809355 ~ 20809585 (-)
G20272 NA non-coding downstream 179943 20807885 ~ 20808113 (-)
G20224 NA non-coding downstream 264438 20723140 ~ 20723618 (-)
G20419 NA non-coding upstream 69690 21074899 ~ 21080084 (-)
G20423 NA non-coding upstream 89114 21094323 ~ 21094522 (-)
G20425 NA non-coding upstream 115693 21120902 ~ 21121351 (-)
G20456 LOC106573594 non-coding upstream 169275 21174484 ~ 21175171 (-)
G20266 NA other downstream 188048 20799120 ~ 20800008 (-)
LOC110502937 ccl25 other downstream 1355439 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 2102404 18876547 ~ 18888907 (-)
LOC110497762 LOC106573859 other downstream 2593196 18390123 ~ 18450517 (-)
LOC110497564 LOC106573866 other downstream 2893118 18089520 ~ 18098678 (-)
LOC110507736 LOC106573601 other upstream 530724 21535882 ~ 21565723 (-)
G21993 NA other upstream 1376661 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 1834636 22839845 ~ 22843305 (-)
G23394 NA other upstream 2618817 23624026 ~ 23624349 (-)

Expression


Co-expression Network