LOC110507379 (LOC106573593)


Basic Information

Item Value
gene id LOC110507379
gene name LOC106573593
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21128187 ~ 21133777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110507379
ATTGCCATAGATAGGCCTACTGGTTGTTGTGGTCAAGGGCACACATGGCCCATACAGTGCAGGACCACCAGAGAGCACTGCCCCAGgctgctgtctctccctccctccagccatgCTAAAAGATTGCCAGTGTTGGACACCCTGCTATGTGGAGTGTTCGCAGGTGCTGTGGCAAAAACAGTCATAGCCCCCCTGCACAGAACCAAGATCATCTTCCTAGTGTCCTCACAAAAATTCTCTGCTAAGGAAGCCTTCAGACTCATATATTGTACGTACATGAAAGATGGCTTCCTCAGCCTGTGGAGGGGCAACTCTGCCACCATGGTGCGAGTCATCCCCTACGCTGCCATCCAGTTCTGCTCCCATGACCAGTACCAGGGAATACTGGGGAGATACTACGGCTTCCAGGGAAAAGCCCTGCCTCCTTTTCCACGTTTCCAGGCAGGATCATTGGCTGGCACCACGGTGGTCATGCTCACCTATCCCCTGGACATGGTGCGGTGACACCCAGGCAAATGTACAGCAACATCATGCACGTTTTTGTGAGCATCACGCAGGAGGAGGGCATAAAGACCCTGTACAGAGGCTTCTGCCCGACCATCTTGGGAGTGATCCCGTACTCAGGAATCACCTTCTTCACATACGAGACCCTCAAGAAACTGCATGCAGagAGAACTAGGCGGTCCCAGCCATACTCCTACGAGCATTTGGTGTTCGGCCAGTCGGCCTCTTCCCCGCTGGACATGGTTCGCCGACGCATGCAGACGGCCAGGGTGACGGGCCAACAGTACGGCAGCGTCCTGGGCACCATGAAGACGATCGTGGTGCAGGAAGGGGGGgtgcgtggactctacaaggtccTCAGTATGAACTGGATCAAAGGGCCAATCGCTGTGGAGGTCAGCTTCACCACCTTTGACCTTATGCACAACCTACTGCACAAGATGCACCAGCTGGGATATTTCACACACTGAGCCAGCAGGGGGAGCCAGAGAAGAAGCTCACTGTTGGGACCAGTCATTCGCTCACAGGGACTAGCACGGGCGCAACATTCACTGGGGACAGAGGGACATCCCGATACAAAAtaaggcaacggtgtgctttaggacgagcggtcgggtaggctggTTGGAGTGTTTTTCtgactggatttttttttaagtacaaaaAATATGTCTCCcgcacttctaaaaccaaagttgtgccCCTGGGGACTAGAATGGCAATAATATACCAGATCTGTCTACTCACAATATGGATCCTCTCAGTAGGCCTATGCACTCTACATGTCAAATAGGAATTCTAAGGAGAGGGTGGTACTGGACAGACAGGAGGAGGCAGAAGCTGTCAGTTTATTTAAACGCACATCTGTATTAAGCACGCACAGCCAGACCCCCACTCCTGCTGTTGATGGATGGAGTGTCTGCACTAGGGCCAAAATAAGTGTCCTCAAACTGGGTAGATGTGTGCAGATGTTTGCAATATGAGAGGTATGACAATGTGAAAGATTTTTTGTTTCGAGGCCTGATCCTTGTTTGAGATTGGGGTATTATGTTGGCACGGGCACATTTTAAAGGCCCAACACAGCTGTTTTTATATCCATATCAAATCATTTGGGTAACAATTGAGTACCTTAATGTAATATATTTCTAttataatgggcaaatattgcttTTTAGCAAAAAACTATTTCTCAAGAAGAagtttgctaggactgtctgttagtggtctgagtggggaggggaaaactgaaaactaactgttattggcagagaggtttggaactctcgtTGTtactattggtctattaactaattttcTGCATGTTGATTTGAGCATGGAAAGCCAAAATTcccgcccatgcaaacctgctggtTATAAATTCCTGTGTAGATTATGGCTGGTTGGTAAACATTCAGAAAATATCACTGATAACATTTTCACACTTCtatagtgttagtttcatcagctgttgtacaatatgatataaacacaggaaaaacagaactgtacttgaaataaaatatttttttcgtAACAGTATCTCTATTTGTCCATAAGGTGGAGCCAAGTGATCAGCAAACTGAAAGCTGGCCTATTCTAGAGTGAAATATTCTAGTTAAGTATGCTGAAAAGTCAAGTCATAACTGCTAAGCCTAAAATAAAATGGGCAAAATTCTA

Function

NR:

description
PREDICTED: mitochondrial coenzyme A transporter SLC25A42-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110507379 True 2181 mRNA 0.47 7 21128187 21133777

Neighbor

gene id symbol gene type direction distance location
LOC118945319 NA coding downstream 39011 21085298 ~ 21089250 (-)
LOC110532071 LOC106573588 coding downstream 122978 20988056 ~ 21005209 (-)
tmem221 LOC106573585 coding downstream 195735 20927809 ~ 20932452 (-)
rfxank rfxank coding downstream 205254 20919626 ~ 20922933 (-)
LOC110506380 NA coding downstream 226148 20885537 ~ 20902039 (-)
LOC110511465 LOC106573796 coding upstream 58567 21192344 ~ 21193157 (-)
LOC118945781 NA coding upstream 99005 21232782 ~ 21242022 (-)
LOC110507674 LOC105011525 coding upstream 223958 21357735 ~ 21362790 (-)
cirbp LOC106573597 coding upstream 229215 21362992 ~ 21368888 (-)
LOC110507736 LOC106573601 coding upstream 402105 21535882 ~ 21565723 (-)
G20425 NA non-coding downstream 6836 21120902 ~ 21121351 (-)
G20423 NA non-coding downstream 33665 21094323 ~ 21094522 (-)
G20419 NA non-coding downstream 48103 21074899 ~ 21080084 (-)
G20307 NA non-coding downstream 264994 20862022 ~ 20863193 (-)
G20456 LOC106573594 non-coding upstream 40707 21174484 ~ 21175171 (-)
G20557 NA non-coding upstream 177028 21310805 ~ 21312539 (-)
G20666 NA non-coding upstream 223431 21357208 ~ 21357457 (-)
G20668 NA non-coding upstream 236987 21370764 ~ 21371028 (-)
G20669 NA non-coding upstream 237373 21371150 ~ 21371378 (-)
G20266 NA other downstream 328179 20799120 ~ 20800008 (-)
LOC110502937 ccl25 other downstream 1495570 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 2242535 18876547 ~ 18888907 (-)
LOC110497762 LOC106573859 other downstream 2733327 18390123 ~ 18450517 (-)
G21993 NA other upstream 1248093 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 1706068 22839845 ~ 22843305 (-)
G23394 NA other upstream 2490249 23624026 ~ 23624349 (-)
LOC110511130 LOC106573631 other upstream 2688923 23821656 ~ 23861029 (-)

Expression


Co-expression Network