LOC110511465 (LOC106573796)


Basic Information

Item Value
gene id LOC110511465
gene name LOC106573796
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21192344 ~ 21193157 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110511465
ATGTGCACGGAAAAAGTTCTGCGCGGGATGGGCTACAAATTGGGGGTGACAATCGGGGAGGGAAGCTACTCCAAAGTCAAACTGGCAAGCTCAAAGAAACACAATTCCGAGGTCGCCATAAAAATTGTGGACCGCAAAAAGGCGCCTCACGACTTTGTCCACAAGTTTCTACCCAGGGAGCTGACGCTTCTGAGGGAAGTGAGACATGACAATATTGTCCATGTGCACGAATTCATCGAGGTTTGCATCGGCCGACTATACATCGTGATGTAAGCGGCAACAACGGACCTTCTCCAAAAAATCCAAGAGGTAAATTCCATCCCCATTGTCCAAGCCAAGACCATGTTCTCCCAGATAGTTCACAGCACTGACAATCTCCATCAACACAACATCGTCCACCGAGACATGAAATGTGAGAATGTACTACTGACaagggacaacaaagtcaagatcaCAGACTTTGGTTTTGGGAGGTTTGCCATGGGCTATCCTGAACTGAGCAGCACTTACTGTGGTTCCGCGGCCTACGCCGCGGAACCACAGTAAGTGGGTACTGCTTGGAGTTCCATACGATCCCAAGAAATATGACGTGTGGAGCCTGGGTGTGATTCTGTATGTCATGGTCACTGGGTGCATGCCTTACGACGATTCCAATGTCCGCAAACTCCCTCGCGCTCAGCGCAAGGCCTTGGTCTACCTGGATGACGTCACCGTGGAAGAGCCATGCCAGCTGTTCATTGCCTATCTGTTGCAGTTCTGCCCTTCTTCCCGTCCGACAATCCAACAGGTGGCAGAGCAGTCTTGGTTGCAATAG

Function

NR:

description
PREDICTED: testis-specific serine/threonine-protein kinase 6-like

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110511465 True 814 mRNA 0.50 1 21192344 21193157

Neighbor

gene id symbol gene type direction distance location
LOC110507379 LOC106573593 coding downstream 58567 21128187 ~ 21133777 (-)
LOC118945319 NA coding downstream 103168 21085298 ~ 21089250 (-)
LOC110532071 LOC106573588 coding downstream 187135 20988056 ~ 21005209 (-)
tmem221 LOC106573585 coding downstream 259892 20927809 ~ 20932452 (-)
rfxank rfxank coding downstream 269411 20919626 ~ 20922933 (-)
LOC118945781 NA coding upstream 39625 21232782 ~ 21242022 (-)
LOC110507674 LOC105011525 coding upstream 164578 21357735 ~ 21362790 (-)
cirbp LOC106573597 coding upstream 169835 21362992 ~ 21368888 (-)
LOC110507736 LOC106573601 coding upstream 342725 21535882 ~ 21565723 (-)
LOC110508066 LOC106613744 coding upstream 394360 21587517 ~ 21604429 (-)
G20456 LOC106573594 non-coding downstream 17173 21174484 ~ 21175171 (-)
G20425 NA non-coding downstream 70993 21120902 ~ 21121351 (-)
G20423 NA non-coding downstream 97822 21094323 ~ 21094522 (-)
G20419 NA non-coding downstream 112260 21074899 ~ 21080084 (-)
G20557 NA non-coding upstream 117648 21310805 ~ 21312539 (-)
G20666 NA non-coding upstream 164051 21357208 ~ 21357457 (-)
G20668 NA non-coding upstream 177607 21370764 ~ 21371028 (-)
G20669 NA non-coding upstream 177993 21371150 ~ 21371378 (-)
G20678 NA non-coding upstream 189295 21382452 ~ 21382704 (-)
G20266 NA other downstream 392336 20799120 ~ 20800008 (-)
LOC110502937 ccl25 other downstream 1559727 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 2306692 18876547 ~ 18888907 (-)
LOC110497762 LOC106573859 other downstream 2797484 18390123 ~ 18450517 (-)
G21993 NA other upstream 1188713 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 1646688 22839845 ~ 22843305 (-)
G23394 NA other upstream 2430869 23624026 ~ 23624349 (-)
LOC110511130 LOC106573631 other upstream 2629543 23821656 ~ 23861029 (-)

Expression


Co-expression Network