LOC118945781


Basic Information

Item Value
gene id LOC118945781
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21232782 ~ 21242022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040883.1
tggagatctattggcggattgtctgactgaccgactgactaccaccttttttgtatacgATCCCTAATGAAGTCACATCTCCCCTACCATCTCACCTGACTTCCCATCCTACCCCAGCCACCCATCCcagcccccccaccccaccccctttGGAGGATAAAGGAGCAAGGATGCTTGATAAGGAGCTAGCAGATGCTACGGTTATCAATCCTGCATCCCATCCTGCTGAGCAACCGTTTCGCCCACCTGCTTCCAGAGATTCCTGCTCCTTCATCCTTTATCCTGTTTCCTGATGGTCCAGCTTAGGGGGTCTGAACTAATAAAACAGAGATAATGAAACAGGATTTTACTGAGCTGATCAACACCCTAAAAGTCTCTGAAAAGCATCCAATTATCTCTGGTCCTGTGAAGTCGCTGGGTCGCGGCTGTGAAAGGTTCAGCAGAATCTTAGCACGTCATATCTGGTTTAAAGACTACTACCACTCTGTTGGCATAACTTTTGACAACTGACACCTTTTGGAAACAAAAAATGCTCTACAGAGATGATGGACTCCACCCAAACCATCTAGGAGCCTGGACCCTCTATTCATATTTCAAGGCTGCATTAAGATATTGACTCAGCCCTGTTCAAGTTGGACAACATGGGGTTTTGACCCTGGAGGTTGCTCAGCCGCAGTAAACAACAAGCAGTTCACTCTCTCCTGTTGTGGGATGGGCAGGCAGCACTAGCTGATTGTCCAGTGAATACCATCTTTTCGCTTGACCTCTCTGACATATCCCCGGTGGCATCCTACCATCTCAGCTTCCTGTCTTACGCCTCTGACCAGTGTTCTcatacacatagagacacacagagacaccaagGATGAGATGTTCTCACCTACCTGCCCTATGAAATACATCGGAGTCAGGGCATCAGTTAAGCCTACGGAGCTACAGTAACAGTGGACCCTCCATTTTGTACTTGATTCTTCCCTAGAGACTTAGAAAACAGCACTATAAGGTTAGCAATGCACTGACAGACCTAATGGTGATGGGTAATCTAGAGGGAGGATATTTGTCAAGCAAAACCATGGCAATAAGAGTGAAGAGGATTACATGACATGCAAGGATGTTGCTAGATTAGGTAAGACTGGCTTCTCTACATTGACAAACAAAAACATTAGTAAACTAGGCGTGTGTTGTTCTGAGTCGGTAAGCCTGAAGGCTTGGTTTGTTGTGATGCCATAAGGCATAGAGCGATCTCTTTTTCCATCCCTTTCCCgctctccctagctctctctttctccctctctccctttatcctTATCACTgcattctctccctttctccatttatcacgctctctttttctccatttctctcctctctctccagttaaccATGTCACTTGTTAGTCTGTAATTATCTGTTGTAACTAAGTACTGATGTTTCTACCTTTGACCTTTTTAACTGCCACTATCAAATGTCCGCCAGTGTTGAATGTGATGTTTAAAGTTTTACACCAGACTGGGGCAAGGACACACTGATAATGTATCTGTGACACTATGAATCTATAGCTGCTGATGTTGTGACTTCCTACAAGCCTCTcgggctggtgtttacagaacatttggTGCAGTGTGATTAATATAAAAAGGGCCTTCTCAGAGAACGCCCGTTAGACATTTTTCTGTTGCAACTTGTAATTAAAGCAAAATTATTTTGATTGATATCAACAACTCCTCTCCTTTTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC105902712

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040883.1 True 1735 mRNA 0.45 3 21232782 21242022

Neighbor

gene id symbol gene type direction distance location
LOC110511465 LOC106573796 coding downstream 39625 21192344 ~ 21193157 (-)
LOC110507379 LOC106573593 coding downstream 99005 21128187 ~ 21133777 (-)
LOC118945319 NA coding downstream 143606 21085298 ~ 21089250 (-)
LOC110532071 LOC106573588 coding downstream 227573 20988056 ~ 21005209 (-)
tmem221 LOC106573585 coding downstream 300330 20927809 ~ 20932452 (-)
LOC110507674 LOC105011525 coding upstream 115713 21357735 ~ 21362790 (-)
cirbp LOC106573597 coding upstream 120970 21362992 ~ 21368888 (-)
LOC110507736 LOC106573601 coding upstream 293860 21535882 ~ 21565723 (-)
LOC110508066 LOC106613744 coding upstream 345495 21587517 ~ 21604429 (-)
LOC110532081 LOC106573605 coding upstream 444055 21686077 ~ 21733286 (-)
G20456 LOC106573594 non-coding downstream 57611 21174484 ~ 21175171 (-)
G20425 NA non-coding downstream 111431 21120902 ~ 21121351 (-)
G20423 NA non-coding downstream 138260 21094323 ~ 21094522 (-)
G20419 NA non-coding downstream 152698 21074899 ~ 21080084 (-)
G20557 NA non-coding upstream 68783 21310805 ~ 21312539 (-)
G20666 NA non-coding upstream 115186 21357208 ~ 21357457 (-)
G20668 NA non-coding upstream 128742 21370764 ~ 21371028 (-)
G20669 NA non-coding upstream 129128 21371150 ~ 21371378 (-)
G20678 NA non-coding upstream 140430 21382452 ~ 21382704 (-)
G20266 NA other downstream 432774 20799120 ~ 20800008 (-)
LOC110502937 ccl25 other downstream 1600165 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 2347130 18876547 ~ 18888907 (-)
LOC110497762 LOC106573859 other downstream 2837922 18390123 ~ 18450517 (-)
G21993 NA other upstream 1139848 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 1597823 22839845 ~ 22843305 (-)
G23394 NA other upstream 2382004 23624026 ~ 23624349 (-)
LOC110511130 LOC106573631 other upstream 2580678 23821656 ~ 23861029 (-)

Expression


Co-expression Network