cirbp (LOC106573597)


Basic Information

Item Value
gene id cirbp
gene name LOC106573597
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21362992 ~ 21368888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036806.1
aTAAAGATGTCTGACGAAGGAAAGCTTTTTGTTGGAGGATTGTGTTTTGACACTGATGAAACTTCACTGGAAGAGGCGTTTTCCAAGTATGGCAACATTGCTAAAGTTGATGttgtaagagacagagagactcggAGGTCCAGGGGTTTCGGCTTTGTGACTTTTGAAAACCCTGAAGATGCCAAAGATGCAATGGCTGCAATGAATGGCAAGTCTGTTGATGGCAGGATGATCCGTGTGGATGAAGCTGGCAAGTCAGGAGGAAGATCTGACCGTGGTGGTGGCTTCAGGGGGGGTTCTGGCGGTTTCAGAGGGGGTTCTGGTGGCTtcagaggaggcagaggaagagGTGGCGGCTATGGTGGAGGAGACCGAAGCTATGGTGGTGACAGAAGctatggtggaggagagagaagctatgggggagagagaagctATGGAGGTGACAGAAGTTACGGTGGTGGAGGAGACAGGAGTTACGGTGGTAGCTACAGGAGTGGTGGAGGATACTCCTCTGGGGGTGGCAGCGGAGGTTACAGAGAGGCCAGGAGTGGTGGTGAAAGTGGTTATGGTGGCCGCTCTGGGGGATCCTACAGAGACAGCTATGACAGCTATGGTTAAACTAAGCGTTGGATGTGAAAGCCTGCTTTAACACGAGGTTGTGGACTTCGACGCTGACTGTTTCGTTCCAGTGCTTCCTTGGAGGTTCACCACAGGATTGTTTGCCCTGAAACAGCTCCTTGGAAAATCGTCACCAGGAGATATCTAAGACTGAACTGGAGATGTGCTGCTGAACTGGACTTGTTGTTTAGTCAAGACCTGCCTTGGAATGGGAGTGCATATCTGAACTAGATTTTATATATCCATGACATTTACCAAACGGATTGTCATTCTGGCGTGCCAATGCAGTACCTGTATTACAAGTATACACTTTGTATTTTTTAGTGAAGTACTCAAATGAACGTCTTGGAAATtgaatggattaaatatttatttttttcaaa
>XM_036948335.1
GCATGCACACCGTTCTTATTTTACCTCCATGATGCGTACGCCCCTTTTGCTATTTATTCATGTCTCACGCAGACGCTCATATATTGGAGCCATTTTGACATATTTCTCAGACGACGCCAAACCACACAAAGgccaggtgcttattttttttctctctagaTAAAGATGTCTGACGAAGGAAAGCTTTTTGTTGGAGGATTGTGTTTTGACACTGATGAAACTTCACTGGAAGAGGCGTTTTCCAAGTATGGCAACATTGCTAAAGTTGATGttgtaagagacagagagactcggAGGTCCAGGGGTTTCGGCTTTGTGACTTTTGAAAACCCTGAAGATGCCAAAGATGCAATGGCTGCAATGAATGGCAAGTCTGTTGATGGCAGGATGATCCGTGTGGATGAAGCTGGCAAGTCAGGAGGAAGATCTGACCGTGGTGGTGGCTTCAGGGGGGGTTCTGGCGGTTTCAGAGGGGGTTCTGGTGGCTtcagaggaggcagaggaagagGTGGCGGCTATGGTGGAGGAGACCGAAGCTATGGTGGTGACAGAAGctatggtggaggagagagaagctatgggggagagagaagctATGGAGGTGACAGAAGTTACGGTGGTGGAGGAGACAGGAGTTACGGTGGTAGCTACAGGAGTGGTGGAGGATACTCCTCTGGGGGTGGCAGCGGAGGTTACAGAGAGGCCAGGAGTGGTGGTGAAAGTGGTTATGGTGGCCGCTCTGGGGGATCCTACAGAGACAGCTATGACAGCTATGCTACACACgagtaaaaacaaaaacaaacttcCTGATTGCAAGATCGTCCCTTCGCTGGCTGTTTTTTAAAAGATGCGCTCTTCGAagacacttttttttcttctgtttgtGGTATCTGGTTCTAGTGTTTTCTTTAACAAACTTGGCAGTATCTTTAGTTTTTTTGTGTTGTGTTCTACAGGATCTGTCATGGCAGTAATTGAAATCCTGTAGCGTTTAATTACTGTAAGCCTTGACGCTCACTAAGGATCTTAATACCTTAAGTTCAGTATGCCCTCCTGGTGTTGCAGGAAGAGTGGACACTGGGAGAATCAAATTTGATAATTAATGGCTTTATTTGCAATGAAACCTGTTTCCACCGTTAACTCGTAATCTGTTCAACACAGCCTGATAGCTTCTAAGACAAATTCAGTCTTGCCCATGTTCCTGCTCAATCGGAAGACTCAAATATCAGTAGTAACATGTTTCCATTTAAGCTTATTTTAACTGGTGTTGTGAATTctggactttaaaaaaaaatctgtgaaaTTTACACTAGAAGCTTGACAAGCTGTGATGTGCTCCTTCAGTTCTGTAATGCATTCCTTTAGTGTAACAAGGTAGGAATGCTAAGTGGGAGCACTGGTTTCCAGCAAACCACCTTGATATTGCTAAAGATTTGTAAATACTCAGTATCCAAAGAGTGAATGACTTACTGGCGAAATAACTTAATTTCATTGAAAGGTATACTAGGTGTTTGCAGCCTTCTGCAGTTGGCCTAAGGTACTTTGCTCTTCTCAAACGTGCATAATGATGGACTCAACATTCACGATCACTCAATGTTACTACAAGGATATGTGCTCTGTTCTGTGTACAAACACccaatttattttttttgtatatcCTGGCTTCATGAAGCCTATTAAACAATCCGTTGAAAATG
>NM_001165119.1
AGACGACGCCAAACCACACAAAGaTAAAGATGTCTGACGAAGGAAAGCTTTTTGTTGGAGGATTGTGTTTTGACACTGATGAAACTTCACTGGAAGAGGCGTTTTCCAAGTATGGCAACATTGCTAAAGTTGATGttgtaagagacagagagactcggAGGTCCAGGGGTTTCGGCTTTGTGACTTTTGAAAACCCTGAAGATGCCAAAGATGCAATGGCTGCAATGAATGGCAAGTCTGTTGATGGCAGGATGATCCGTGTGGATGAAGCTGGCAAGTCAGGAGGAAGATCTGACCGTGGTGGTGGCTTCAGGGGGGGTTCTGGCGGTTTCAGAGGGGGTTCTGGTGGCTtcagaggaggcagaggaagagGTGGCGGCTATGGTGGAGGAGACCGAAGCTATGGTGGTGACAGAAGctatggtggaggagagagaagctatgggggagagagaagctATGGAGGTGACAGAAGTTACGGTGGTGGAGGAGACAGGAGTTACGGTGGTAGCTACAGGAGTGGTGGAGGATACTCCTCTGGGGGTGGCAGCGGAGGTTACAGAGAGGCCAGGAGTGGTGGTGAAAGTGGTTATGGTGGCCGCTCTGGGGGATCCTACAGAGACAGCTATGACAGCTATGCTACACACgagtaaaaacaaaaacaaacttcCTGATTGCAAGATCGTCCCTTCGCTGGCTGTTTTTTAAAAGATGCGCTCTTCGAagacacttttttttcttctgtttgtGGTATCTGGTTCTAGTGTTTTCTTTAACAAACTTGGCAGTATCTTTAGTTTTTTTGTGTTGTGTTCTACAGGATCTGTCATGGCAGTAATTGAAATCCTGTAGCGTTTAATTACTGTAAGCCTTGACGCTCACTAAGGATCTTAATACCTTAAGTTCAGTATGCCCTCCTGGTGTTGCAGGAAGAGTGGACACTGGGAGAATCAAATTTGATAATTAATGGCTTTATTTGCAATGAAACCTGTTTCCACCGTTAACTCGTAATCTGTTCAACACAGCCTGATAGCTTCTAAGACAAATTCAGTCTTGCCCATGTTCCTGCTCAATCGGAAGACTCAAATATCAGTAGTAACATGTTTCCATTTAAGCTTATTTTAACTGGTGTTGTGAATTctggactttaaaaaaaaatctgtgaaaTTTACACTAGAAGCTTGACAAGCTGTGATGTGCTCCTTCAGTTCTGTAATGCATTCCTTTAGTGTAACAAGGTAGGAATGCTAAGTGGGAGCACTGGTTTCCAGCAAACCACCTTGATATTGCTAAAGATTTGTAAATACTCAGTATCCAAAGAGTGAATGACTTACTGGCGAAATAACTTAATTTCATTGAAAGGTATACTAGGTGTTTGCAGCCTTCTGCAGTTGGCCTAAGGTACTTTGCTCTTCTCAAACGTGCATAATGATGGACTCAACATTCACGATCACTCAATGTTACTACAAGGATATGTGCTCTGTTCTGTGTACAAACACccaatttattttttttgtatatcCTGGCTTCATGAAGCCTATTAAACAATCCGTTG
>XM_036947876.1
CGCCCCTTTTGCTATTTATTCATGTCTCACGCAGACGCTCATATATTGGAGCCATTTTGACATATTTCTCAGACGACGCCAAACCACACAAAGaTAAAGATGTCTGACGAAGGAAAGCTTTTTGTTGGAGGATTGTGTTTTGACACTGATGAAACTTCACTGGAAGAGGCGTTTTCCAAGTATGGCAACATTGCTAAAGTTGATGttgtaagagacagagagactcggAGGTCCAGGGGTTTCGGCTTTGTGACTTTTGAAAACCCTGAAGATGCCAAAGATGCAATGGCTGCAATGAATGGCAAGTCTGTTGATGGCAGGATGATCCGTGTGGATGAAGCTGGCAAGTCAGGAGGAAGATCTGACCGTGGTGGTGGCTTCAGGGGGGGTTCTGGCGGTTTCAGAGGGGGTTCTGGTGGCTtcagaggaggcagaggaagagGTGGCGGCTATGGTGGAGGAGACCGAAGCTATGGTGGTGACAGAAGctatggtggaggagagagaagctatgggggagagagaagctATGGAGGTGACAGAAGTTACGGTGGTGGAGGAGACAGGAGTTACGGTGGTAGCTACAGGAGTGGTGGAGGATACTCCTCTGGGGGTGGCAGCGGAGGTTACAGAGAGGCCAGGAGTGGTGGTGAAAGTGGTTATGGTGGCCGCTCTGGGGGATCCTACAGAGACAGCTATGACAGCTATGGTAAGTTTGATGTAGCCTAGTTGCCATGAACTCACTGTTGGTATGGACTAGAAATGTTTAGTACGGACTGGACATGATTGCATAGACTCCCAGAATGGCCCTTTAAGACTTTTGTTGCTCAGTATCCGAAAGCCTGTGCCCTCTTGGATTAGCATGTTAAAATACCCAGGCCTGCTCAAAAATCCAGCTCTGCCACCCACACAGGAGCAGAAAGacatttcaatattttttttcactGAGTCAGTTCTTCTTTTGAAGAGGCATAAGTTCACGTCCAATGCCCCTTGCCCTGATGCTTTACTGTTTCAATGAGAACTGTGGCACAAAATATTAATAGGTTCTAGTCTACTGTGTGAGAAATGTCCGAATGCTGCAGTGCCTTTACACTTGTGGC
>XM_036947495.1
CGCATGCACACCGTTCTTATTTTACCTCCATGATGCGTACGCCCCTTTTGCTATTTATTCATGTCTCACGCAGACGCTCATATATTGGAGCCATTTTGACATATTTCTCAGACGACGCCAAACCACACAAAGgccaggtgcttattttttttctctctagaTAAAGATGTCTGACGAAGGAAAGCTTTTTGTTGGAGGATTGTGTTTTGACACTGATGAAACTTCACTGGAAGAGGCGTTTTCCAAGTATGGCAACATTGCTAAAGTTGATGttgtaagagacagagagactcggAGGTCCAGGGGTTTCGGCTTTGTGACTTTTGAAAACCCTGAAGATGCCAAAGATGCAATGGCTGCAATGAATGGCAAGTCTGTTGATGGCAGGATGATCCGTGTGGATGAAGCTGGCAAGTCAGGAGGAAGATCTGACCGTGGTGGTGGCTTCAGGGGGGGTTCTGGCGGTTTCAGAGGGGGTTCTGGTGGCTtcagaggaggcagaggaagagGTGGCGGCTATGGTGGAGGAGACCGAAGCTATGGTGGTGACAGAAGctatggtggaggagagagaagctatgggggagagagaagctATGGAGGTGACAGAAGTTACGGTGGTGGAGGAGACAGGAGTTACGGTGGTAGCTACAGGAGTGGTGGAGGATACTCCTCTGGGGGTGGCAGCGGAGGTTACAGAGAGGCCAGGAGTGGTGGTGAAAGTGGTTATGGTGGCCGCTCTGGGGGATCCTACAGAGACAGCTATGACAGCTATGGTAAGTTTGATGTAGCCTAGTTGCCATGAACTCACTGTTGGTATGGACTAGAAATGTTTAGTACGGACTGGACATGATTGCATAGACTCCCAGAATGGCCCTTTAAGACTTTTGTTGCTCAGTATCCGAAAGCCTGTGCCCTCTTGGATTAGCATGTTAAAATACCCAGGCCTGCTCAAAAATCCAGCTCTGCCACCCACACAGGAGCAGAAAGacatttcaatattttttttcactGAGTCAGTTCTTCTTTTGAAGAGGCATAAGTTCACGTCCAATGCCCCTTGCCCTGATGCTTTACTGTTTCAATGAGAACTGTGGCACAAAATATTAATAGGTTCTAGTCTACTGTGTGAGAAATGTCCGAATGCTGCAGTGCCTTTACACTTGTGG

Function

NR:

description
PREDICTED: cold-inducible RNA-binding protein B-like isoform X2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036806.1 False 1004 mRNA 0.48 7 21362992 21367699
XM_036948335.1 False 1697 mRNA 0.44 7 21365215 21368887
NM_001165119.1 False 1555 mRNA 0.44 7 21365221 21368779
XM_036947876.1 False 1103 mRNA 0.48 6 21366153 21368849
XM_036947495.1 True 1169 mRNA 0.48 6 21366154 21368888

Neighbor

gene id symbol gene type direction distance location
LOC110507674 LOC105011525 coding downstream 202 21357735 ~ 21362790 (-)
LOC118945781 NA coding downstream 120970 21232782 ~ 21242022 (-)
LOC110511465 LOC106573796 coding downstream 169835 21192344 ~ 21193157 (-)
LOC110507379 LOC106573593 coding downstream 229215 21128187 ~ 21133777 (-)
LOC118945319 NA coding downstream 273816 21085298 ~ 21089250 (-)
LOC110507736 LOC106573601 coding upstream 166994 21535882 ~ 21565723 (-)
LOC110508066 LOC106613744 coding upstream 218629 21587517 ~ 21604429 (-)
LOC110532081 LOC106573605 coding upstream 317189 21686077 ~ 21733286 (-)
LOC110508721 LOC106573612 coding upstream 742116 22111004 ~ 22203625 (-)
LOC118966627 NA coding upstream 857317 22226205 ~ 22231598 (-)
G20666 NA non-coding downstream 5535 21357208 ~ 21357457 (-)
G20557 NA non-coding downstream 50453 21310805 ~ 21312539 (-)
G20456 LOC106573594 non-coding downstream 187821 21174484 ~ 21175171 (-)
G20425 NA non-coding downstream 241641 21120902 ~ 21121351 (-)
G20423 NA non-coding downstream 268470 21094323 ~ 21094522 (-)
G20668 NA non-coding upstream 1876 21370764 ~ 21371028 (-)
G20669 NA non-coding upstream 2262 21371150 ~ 21371378 (-)
G20678 NA non-coding upstream 13564 21382452 ~ 21382704 (-)
G20679 NA non-coding upstream 14860 21383748 ~ 21384035 (-)
G20680 NA non-coding upstream 15616 21384504 ~ 21384705 (-)
G20266 NA other downstream 562984 20799120 ~ 20800008 (-)
LOC110502937 ccl25 other downstream 1730375 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 2477340 18876547 ~ 18888907 (-)
LOC110497762 LOC106573859 other downstream 2968132 18390123 ~ 18450517 (-)
G21993 NA other upstream 1012982 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 1470957 22839845 ~ 22843305 (-)
G23394 NA other upstream 2255138 23624026 ~ 23624349 (-)
LOC110511130 LOC106573631 other upstream 2453812 23821656 ~ 23861029 (-)

Expression


Co-expression Network