LOC110507736 (LOC106573601)


Basic Information

Item Value
gene id LOC110507736
gene name LOC106573601
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21535882 ~ 21565723 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587980.2
CTCTCGCCTCCCGAATTGCACTTGTAATACGAAAGACACTGGGGGGTAAACGTCATACAGGCATTTTAGGACAACTGGATCTCAAGCAGTGAGCAAGAGGAGTACAGAGCCTGTTCTTACTCCTACAGTCGAGACGCACACATTTGTCTGCGAATTTACTGTCACAGTGGATAGCCTACTGACCTATCTGGATATAGCCTACTTCAGTATTTCTCATAGTTTAGGAAGATTTACATGCCAAAGCTGGGGAAACGTGTTGGAAAAACCCAAGCTTTATCGCAAAGCTTTAAAGTTCTCGCCACAATAATTGGCTATCGAATGGACCAACATCCTAGCGCCCGGAGCTGCACCAGCCGCGGGGCTCCGTCTTGCGAGGCCGTCCCGAGTGAACCCTCCATGAATTTGTACATCCATTCCACAACCGGCACACGCTTCGAGCTCGCTCTTCCCCTGGAGGAGACTGTGGAAGGACTGAAGAGAAGACTTTCTCAGAGACTCAAAGTACCAAAAGAAAGACTCGCCCTTCTACATCAAGAAACGCGTCTGAGTTCAGGAAAACTCCAGGACCTAGGGATATCTGATGGGAGCAAGTTAACACTTGTACCTACAGTTGAAGCAGGCTTAATGTCTCAAGCATCAAGACCAGAACAGTCAGTGATGCAAGCTTTGGAGAGTTTAACAGAAACTCAGGTCAGTGACTTCCTGTCCGGCCGCTCTCCTCTGACCCTGGCGCTGCGAGTAGGTGATCACATGATGTTTGTCCAGCTGCAGTTGGCTGCCCAGCAGTCTGGAGGGCAGCACTTACAGCACAGGCAGCTCATCGCCCGCGGGGGTACAGAGGCGACCATGGGACAGTCCACAGGCGCTTCTGGAGGGTTCAGCAGCGGGCATCACCCCCGcgcccccaccccccaccaccaccactctcaccTCCACTCTCGCCCCCATCCTAACCAGTCCCAGGCCCACCCAGTGCCCTTCCCCTCTACCAGCACAGCGGCCTTCCCCCCTGCCCCCTCACAACAGCCCTCTCCTCCCATGTACCAGTCTTCCTCTTCCGCCCCCTCAAGTCACTGCAGCacccctcctcctgctcctcgtCCCTCCCAGCTGCCCGGCAGTCTGTTTAGTcgctcccaccatccctccccgGGTCGACCCAGCCCCGCTTCCGAACCCCAGAGCACCCCCACTGCAGCCCCCTGTCCTGAGGCTAACTGTGCTAAGAGCCCCAGCAACGGCACTAGTGCTTCAgtgcactcctcctcctcctcctcctcccgtaAACCAGGTGCCATCATCGAAAGCTTTGTCAACCACGCTCCTGGGGTCTTCTCAGGGACTTTTTCAGGCACTTTGCATCCTAACTGTCAGGACAGCACTGGGCGGCCCAGGCGAGACATCGGCACCATCCTGCAGATCCTCAACGACCTCCTGAGTGCCACGCGCCACTACCAGGGCgtgcctccctccctcacccagcTCCGCTACCAGACGCAGTGTGGCTCGCCCTCCCCCGCCTCCACGCCGCCCTCACCCCCTCCTTCGCCCCCAGCCACCACCGCTGGCATCGCCGGCATCTCTGCCAAAGCTAACTCGGTGCCCGCCAGAAACCCCATCTCATCCCCCCTCCACCCGCTGGTGCAGTGCCAGAGCCAGATCCGCATGTGCAAGCCCCCTGgtgACCGTGTGCGTCAGACAGAGAACCGTGCAACTCGCTGCAAGGTGGAGCGTCTGCAGCTCCTGATGCAGCAGAAGCGCCTGCGCAGGAAGGCAAGGCGGGACTCCAGAGCGCCCTACCACTGGCTGCCCAACCGCAAGGCGGGAcgcagcaacagcaacagcagtgTGTCCAGCGAGGGATCCATGGACCTCGACTTCGACGACTCTGTGTGGAAGCCCGACGTCAAGGCCGACATGAAGTCCGAGTTCATCATGGCGTAATGATAAAGAAGAGGATACTGATTGGCTGGATAATGGAGAGCCAGACTCTGGGATTAAGCGAGAGGAAGTTGGGGATGGTTTCGGAGGTGTGGAAAATAGGCTGGAGCTGAGTGTGGAGcatgaaaaaaaaaagagagagggaagaaagctGGTCATGGTCTTCTCTCAGTGGGACAACCAACTGTCACACCAAAAGGCTCCCTGCTGACTTTCATCTTTTCATGTCCCCCACAGCCTCCTACCATTAGAAATAAACAACAGAAACAGATGTTTGACATTTAGACTGGGAACGGATATGTCTGGACTTACGAGAATACAGTTATGCATATAGACTGCAAATACGTACTGCCTAtgagaagagaaaaaaaacagaactgaGCATAGCAGACttggatggtggtggtagtggtgttttGGTGTGGGTTTTTTTTCCATAGATTTTTTTCAAGCAGAACTCTGGAGAGAGATCCACACTGGACTTGTGAGCAGGAGTGATGGTGGCTGGGGCCGTGGTGTAACTACACAGGACAGACAGATAACCGCTGGCCCCAGAGCCATCCCTGGCCTACTCTAATGGGCATTCTAGGTCTCCACTTCACCGACAAGAGTCAACTTTTTACTTATAGGGTTATCTTTTTATTTTCATTTGAaatgtattgttattttatttttttctaaagAACTATGTAGCATTGTTCACAAAGCATTCAGGTTTTCATCGACAGTTTCAAAAGTAGTCATTGATTTGCCAATTTTTCATGATTTTGGAACAGCAGGTCAGAGTGTGCAGGAAGTAGGATACGAGGAGCAATGACTCATGGGAAATGGGCATTTGACTAAAGTTCAGACTTACATGAACGGCAACCTCAGTGACATACAGTAGGATATTAATAGGAATTCATTAATTAATAAACAAAGATAATATTAATGGAGTGCTTTAGAGGATTTTAAAATCatgatttaaaaatgtatttggaaagaaatctgtttatttaacttttcatctgctgtttaaaaaaacattagTCCAGTTTTGCTTGGGTCAAGCCATTCATTAAATTGATAACTAACAAACGTATTCATCCAATCATTCATCCGCTCATTCACTCATTAGGGTCATATTGCCACAAACAAATAATGGAGAAAAAAATCCCATTGAATCCAACTTGTGTCTTACAGACCTATTTCACTTATAGGTGGGGatcacaaatgtgtgtgtgtgtgtgtgtgtgacatttgtGTATATTCATTACGATGGCTGATTCATCCCTTTTGTCACTCAAACTATGGAGGTTCGGTACAGACGATTCTCTCCATTCCTTACCATTGAGATGATGTAGACACATGTCCCATATATTCATTTTTGAACCTACATCACACTTTAACCAAGGCCCTTGTTAGAAAAATGTGATTACGTCAAGCTACTTTCTACTATTggaaaggagaggtggaagaaAGCTAAGAAATCCCAAGCAGGGAACCTGTCTCCACTTTCATCAACTAGTGCCTCCACCAGTGGATTCCCTCACATATCAGATTAGGCCTTTGACAGACTTTCAAAGAGATTTGCTGCTACATGGGACTTTGATAGACAGGGAAAAGAGTAACTTTTCTTTGCATGCAAAAAGTGTGAATTATCctgatatttttgttgttgttggaagaAAACAAATAGAGGAGAAATGGGTGCTTTGAAGAGGAGGTAAAACATGCATGGATAATGATCAGCTGCTTTTGTTGGTTAGGTTTTTATGTTCTGAAAAACAACAGCAGTGTCCTGCTCCAAGTATTCTCAAAGCAAACCAAAACAGAAGACTGGACTCATATCTTACCCTGGACTGAACATTCCCTGGACCGTGATGATCATGAGCAAAGAGCAACTGACTTTCCTCCCTGAACGCTAGTTCAACCAACACCAATCTCCTCAACACAGAGACAAGTACCCTGGCAGCAGCCAACTATAACCACCCTCAGCCTATTTAATAACATAGTGTTCAACACAGTGCATGTTCGGGACTAACAGGGAGACCCTTTGGACCAGCGTGCACATCCCCGAACCCAAACCTGTATGGAGAAACACACCATGTCTGACCACCCTACCATGATTGCACTCAAAGGGTTTGCAGTGAGAGATTACCTTGTTTGGTGAACCTCTTCTTTTTTTAAGTGGCCTTATCTTTCACTAAACAAGACAGGTGTGGACTGGGGGGACACGGTTTCTTTCTTTACCTGTATTTTGTCACAACGCTATTGTCACTGAGGATTCGGGCATCTCTTGTTTGTGCTTTTAAAGGGTGGAGTCTTATGTCAAGGCTTCTGTGCCTTAAACGTTGCCCTTGGAGAGTGTGTCAGATATACGatgaacaaattattattatttccttTGATTAATGAATTAATTCATATAAGAGTCTGTAACCACACGAGAGCTGTAGTTTTTAGGGGTAAGCACGTTGAGTGAATTAATATTGATGTGTTTGTTCCTCAATCGGTTTTCCCATTTTCTCTCCATTGTGTTGCCATGTTTGTTGGTCTACTTTGTCCAaatcctcccctctgtcctgccCACCAACAAGCTGAAAATCAACACATTGACAAAACAAAGTACCTGACGTGGAAGTTTTGACTGCAATGTGCAACTATGGCAACAAAGTGGCCTGACTGACTTGGCAGGTGTCCTCTGAGGACGTGAGATGACATGACATGCACTTCCTGTCTCTTTGGATAAGACATTTCAAAGGACAAATTACTCCCCCCTAAATTTAATAGAATTTTGTATACATGTATGAAATATACTCTGTGTGTGCCTCACTTAggtgtgaaataaaaaaataaaataaaaatgtaaaaaaatatgaaaagatGACATGGGATGAGATGGGACAaaagaggggatggggagggcaTTTAAAAAACAGTTTGTTGGTGGAGTTCTGATCACGTCATTTAAGTTGCCTGTTATTTCTTGTAGCCAACCATTGAAAATAATGACAAGAGTCAAGAATACAATTTACAATGTTCTAGCTATAGACCGGTGTAGCACATGTGTGACTGTATTAATTTATGAAACCAAAACGGTAACTGTGAATGATGTATTTCTTTGTGCATTTGTATAAGTGGGACAAGGTGGTTGGGACATAGCAATGACTAATTCCTATGTCCTATTTGATGGAATATAACGGAAATCATGTTtcccaaaaaaacaaaaaatatatcaatatatttttttcttaagcAATACATTTCAGTGTGACTTGTGATAGAACATTTTTCTTTTTTAggtaataaataaaaatacaaaatgagTAGA
>TU24399
ATATTTCTTATCACTCACTGCAGGGAGAGTGTTGGTTTGTTGAAGGTTTATCTCTAACGTTAGACTGatgtctcctttcctctcctctacagGCTAACTGTGCTAAGAGCCCCAGCAACGGCACTAGTGCTTCAgtgcactcctcctcctcctcctcctcccgtaAACCAGGTGCCATCATCGAAAGCTTTGTCAACCACGCTCCTGGGGTCTTCTCAGGGACTTTTTCAGGCACTTTGCATCCTAACTGTCAGGACAGCACTGGGCGGCCCAGGCGAGACATCGGCACCATCCTGCAGATCCTCAACGACCTCCTGAGTGCCACGCGCCACTACCAGGGCgtgcctccctccctcacccagcTCCGCTACCAGACGCAGTGTGGCTCGCCCTCCCCCGCCTCCACGCCGCCCTCACCCCCTCCTTCGCCCCCAGCCACCACCGCTGGCATCGCCGGCATCTCTGCCAAAGCTAACTCGGTGCCCGCCAGAAACCCCATCTCATCCCCCCTCCACCCGCTGGTGCAGTGCCAGAGCCAGATCCGCATGTGCAAGCCCCCTGgtgACCGTGTGCGTCAGACAGAGAACCGTGCAACTCGCTGCAAGGTGGAGCGTCTGCAGCTCCTGATGCAGCAGAAGCGCCTGCGCAGGAAGGCAAGGCGGGACTCCAGAGCGCCCTACCACTGGCTGCCCAACCGCAAGGCGGGAcgcagcaacagcaacagcagtgTGTCCAGCGAGGGATCCATGGACCTCGACTTCGACGACTCTGTGTGGAAGCCCGACGTCAAGGCCGACATGAAGTCCGAGTTCATCATGGCGTAATGATAAAGAAGAGGATACTGATTGGCTGGATAATGGAGAGCCAGACTCTGGGATTAAGCGAGAGGAAGTTGGGGATGGTTTCGGAGGTGTGGAAAATAGGCTGGAGCTGAGTGTGGAGcatgaaaaaaaaaagagagagggaagaaagctGGTCATGGTCTTCTCTCAGTGGGACAACCAACTGTCACACCAAAAGGCTCCCTGCTGACTTTCATCTTTTCATGTCCCCCACAGCCTCCTACCATTAGAAATAAACAACAGAAACAGATGTTTGACATTTAGACTGGGAACGGATATGTCTGGACTTACGAGAATACAGTTATGCATATAGACTGCAAATACGTACTGCCTAtgagaagagaaaaaaaacagaactgaGCATAGCAGACttggatggtggtggtagtggtgttttGGTGTGGGTTTTTTTTCCATAGATTTTTTTCAAGCAGAACTCTGGAGAGAGATCCACACTGGACTTGTGAGCAGGAGTGATGGTGGCTGGGGCCGTGGTGTAACTACACAGGACAGACAGATAACCGCTGGCCCCAGAGCCATCCCTGGCCTACTCTAATGGGCATTCTAGGTCTCCACTTCACCGACAAGAGTCAACTTTTTACTTATAGGGTTATCTTTTTATTTTCATTTGAaatgtattgttattttatttttttctaaagAACTATGTAGCATTGTTCACAAAGCATTCAGGTTTTCATCGACAGTTTCAAAAGTAGTCATTGATTTGCCAATTTTTCATGATTTTGGAACAGCAGGTCAGAGTGTGCAGGAAGTAGGATACGAGGAGCAATGACTCATGGGAAATGGGCATTTGACTAAAGTTCAGACTTACATGAACGGCAACCTCAGTGACATACAGTAGGATATTAATAGGAATTCATTAATTAATAAACAAAGATAATATTAATGGAGTGCTTTAGAGGATTTTAAAATCatgatttaaaaatgtatttggaaagaaatctgtttatttaacttttcatctgctgtttaaaaaaacattagTCCAGTTTTGCTTGGGTCAAGCCATTCATTAAATTGATAACTAACAAACGTATTCATCCAATCATTCATCCGCTCATTCACTCATTAGGGTCATATTGCCACAAACAAATAATGGAGAAAAAAATCCCATTGAATCCAACTTGTGTCTTACAGACCTATTTCACTTATAGGTGGGGatcacaaatgtgtgtgtgtgtgtgtgtgtgacatttgtGTATATTCATTACGATGGCTGATTCATCCCTTTTGTCACTCAAACTATGGAGGTTCGGTACAGACGATTCTCTCCATTCCTTACCATTGAGATGATGTAGACACATGTCCCATATATTCATTTTTGAACCTACATCACACTTTAACCAAGGCCCTTGTTAGAAAAATGTGATTACGTCAAGCTACTTTCTACTATTggaaaggagaggtggaagaaAGCTAAGAAATCCCAAGCAGGGAACCTGTCTCCACTTTCATCAACTAGTGCCTCCACCAGTGGATTCCCTCACATATCAGATTAGGCCTTTGACAGACTTTCAAAGAGATTTGCTGCTACATGGGACTTTGATAGACAGGGAAAAGAGTAACTTTTCTTTGCATGCAAAAAGTGTGAATTATCctgatatttttgttgttgttggaagaAAACAAATAGAGGAGAAATGGGTGCTTTGAAGAGGAGGTAAAACATGCATGGATAATGATCAGCTGCTTTTGTTGGTTAGGTTTTTATGTTCTGAAAAACAACAGCAGTGTCCTGCTCCAAGTATTCTCAAAGCAAACCAAAACAGAAGACTGGACTCATATCTTACCCTGGACTGAACATTCCCTGGACCGTGATGATCATGAGCAAAGAGCAACTGACTTTCCTCCCTGAACGCTAGTTCAACCAACACCAATCTCCTCAACACAGAGACAAGTACCCTGGCAGCAGCCAACTATAACCACCCTCAGCCTATTTAATAACATAGTGTTCAACACAGTGCATGTTCGGGACTAACAGGGAGACCCTTTGGACCAGCGTGCACATCCCCGAACCCAAACCTGTATGGAGAAACACACCATGTCTGACCACCCTACCATGATTGCACTCAAAGGGTTTGCAGTGAGAGATTACCTTGTTTGGTGAACCTCTTCTTTTTTTAAGTGGCCTTATCTTTCACTAAACAAGACAGGTGTGGACTGGGGGGACACGGTTTCTTTCTTTACCTGTATTTTGTCACAACGCTATTGTCACTGAGGATTCGGGCATCTCTTGTTTGTGCTTTTAAAGGGTGGAGTCTTATGTCAAGGCTTCTGTGCCTTAAACGTTGCCCTTGGAGAGTGTGTCAGATATACGatgaacaaattattattatttccttTGATTAATGAATTAATTCATATAAGAGTCTGTAACCACACGAGAGCTGTAGTTTTTAGGGGTAAGCACGTTGAGTGAATTAATATTGATGTGTTTGTTCCTCAATCGGTTTTCCCATTTTCTCTCCATTGTGTTGCCATGTTTGTTGGTCTACTTTGTCCAaatcctcccctctgtcctgccCACCAACAAGCTGAAAATCAACACATTGACAAAACAAAGTACCTGACGTGGAAGTTTTGACTGCAATGTGCAACTATGGCAACAAAGTGGCCTGACTGACTTGGCAGGTGTCCTCTGAGGACGTGAGATGACATGACATGCACTTCCTGTCTCTTTGGATAAGACATTTCAAAGGACAAATTACTCCCCCCTAAATTTAATAGAATTTTGTATACATGTATGAAATATACTCTGTGTGTGCCTCACTTAggtgtgaaataaaaaaataaaataaaaatgtaaaaaaatatgaaaagatGACATGGGATGAGATGGGACAaaagaggggatggggagggcaTTTAAAAAACAGTTTGTTGGTGGAGTTCTGATCACGTCATTTAAGTTGCCTGTTATTTCTTGTAGCCAACCATTGAAAATAATGACAAGAGTCAAGAATACAATTTACAATGTTCTAGCTATAGACCGGTGTAGCACATGTGTGACTGTATTAATTTATGAAACCAAAACGGTAACTGTGAATGATGTATTTCTTTGTGCATTTGTATAAGTGGGACAAGGTGGTTGGGACATAGCAATGACTAATTCCTATGTCCTATTTGATGGAATATAACGGAAATCATGTTtcccaaaaaaacaaaaaatatatcaatatatttttttcttaagcAATACATTTCAGTGTGACTTGTG

Function

NR:

description
midnolin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587980.2 False 5254 mRNA 0.46 8 21535882 21565723
TU24399 True 4083 TUCP 0.36 3 21535933 21547773

Neighbor

gene id symbol gene type direction distance location
cirbp LOC106573597 coding downstream 166994 21362992 ~ 21368888 (-)
LOC110507674 LOC105011525 coding downstream 173092 21357735 ~ 21362790 (-)
LOC118945781 NA coding downstream 293860 21232782 ~ 21242022 (-)
LOC110511465 LOC106573796 coding downstream 342725 21192344 ~ 21193157 (-)
LOC110507379 LOC106573593 coding downstream 402105 21128187 ~ 21133777 (-)
LOC110508066 LOC106613744 coding upstream 21794 21587517 ~ 21604429 (-)
LOC110532081 LOC106573605 coding upstream 120354 21686077 ~ 21733286 (-)
LOC110508721 LOC106573612 coding upstream 545281 22111004 ~ 22203625 (-)
LOC118966627 NA coding upstream 660482 22226205 ~ 22231598 (-)
LOC110508988 NA coding upstream 827255 22392978 ~ 22400323 (-)
G20971 NA non-coding downstream 2768 21532803 ~ 21533114 (-)
G20960 NA non-coding downstream 17853 21517666 ~ 21518029 (-)
G20956 NA non-coding downstream 59395 21476136 ~ 21476487 (-)
G20727 NA non-coding downstream 85458 21450181 ~ 21450424 (-)
G20725 LOC100380853 non-coding downstream 92826 21442824 ~ 21443056 (-)
G20980 NA non-coding upstream 7025 21572748 ~ 21575457 (-)
G20981 NA non-coding upstream 10061 21575784 ~ 21617373 (-)
G21014 NA non-coding upstream 68822 21634545 ~ 21635023 (-)
G21016 NA non-coding upstream 119200 21684923 ~ 21685296 (-)
G21024 NA non-coding upstream 128607 21694330 ~ 21699240 (-)
LOC118945319 NA other downstream 446632 21085298 ~ 21089250 (-)
G20266 NA other downstream 735874 20799120 ~ 20800008 (-)
LOC110502937 ccl25 other downstream 1903265 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 2650230 18876547 ~ 18888907 (-)
LOC110497762 LOC106573859 other downstream 3141022 18390123 ~ 18450517 (-)
G21993 NA other upstream 816147 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 1274122 22839845 ~ 22843305 (-)
G23394 NA other upstream 2058303 23624026 ~ 23624349 (-)
LOC110511130 LOC106573631 other upstream 2256977 23821656 ~ 23861029 (-)
G24542 NA other upstream 2657184 24222907 ~ 24226490 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_02785349_02803666 MIDN coding CI01000030 null 2783629 ~ 2803666 (-)
grasscarp (Ctenopharyngodon idella) G189961 NA non-coding CI01000043 null 988975 ~ 990680 (-)
striped catfish (Pangasianodon hypophthalmus) G182318 NA non-coding NC_047605.1 CM018551.1 15970065 ~ 15974619 (-)