LOC110508066 (LOC106613744)


Basic Information

Item Value
gene id LOC110508066
gene name LOC106613744
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21587517 ~ 21604429 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588545.2
TTCCCGTCATCCTTTGAACGCTCATAAGGCATTGTTGTTCGGTTCAATGTCCTTGTCCTATCAGACGCACACTGTTTGACTGACTTCGCGCAAGGGCTTGGGGATTCGTTTGTACTTGAATTATATTCATTCAAACAAAATGATGGCAGCAAGGTTTCTCCGTTGCGCTCTCCCTGTATTGAGGCAAGCAAGATGCTACGCCGACGCACCTTCAGGTTCTGCACAGATGTCATTCACATTTGCCTCGCCAACGCAGGTGTACTTCAAGGAGGCCAGTGTGAAACAGGTTGACGTCCCCACGCTGACTGGTGCTTTCGGTATCCTCCCTGCCCATGTCCCCACACTGCAGGTTCTCCGGCCCGGAGTGGTCACCGTGTTCAACGATGATGGCTCCGCAGCAAAGTTCTTTGTGAGCAGCGGGTCAATCACAGTGAACGCAGACTCCTCGGTGCAACTACTGGCTGAAGAGGCTTTCCCCCTGGACCAGCTGGATGTGGCTGCTGCCAAGGTCAACTTGGAGAAGGCTCAGTCTGAAATGGCGTCTGCGTCTGACGAGGCTGCCAGGGCCGAGGTCCAGATCAACATAGACGCCAACGAGGCAATCGTCAAAGCCCTGGAGTAGACCGCGCTACTGGTCTTTGTGGTGTCGTGTTGGTATAAAGGAAATGAAAATTCTCCAACTGTTTCCCGGACCAGTCAAGTCAGTAACTGCAAGATCTCATGCTTGCTTTGTACAGTGGAATGAAATGACCAATAAATTGATTTGGATTTACCTGCCAATAA
>XM_021588588.2
TTCCCGTCATCCTTTGAACGCTCATAAGGCATTGTTGTTCGGTTCAATGTCCTTGTCCTATCAGACGCACACTGTTTGACTGACTTCGCGCAAGGGCTTGGGGATTCGTTTGTACTTGAATTATATTCATTCAAACAAAATGATGGCAGCAAGGTTTCTCCGTTGCGCTCTCCCTGTATTGAGGCAAGCAAGATGCTACGCCGACGCACCTTCAGGTTCTGCACAGATGTCATTCACATTTGCCTCGCCAACGCAGGTGTACTTCAAGGAGGCCAGTGTGAAACAGGTTGACGTCCCCACGCTGACTGGTGCTTTCGGTATCCTCCCTGCCCATGTCCCCACACTGCAGGTTCTCCGGCCCGGAGTGGTCACCGTGTTCAACGATGATGGCTCCGCAGCAAAGTTCTTTGTGAGCAGCGGGTCAATCACAGTGAACGCAGACTCCTCGGTGCAACTACTGGCTGAAGAGGCTTTCCCCCTGGACCAGCTGGATGTGGCTGCTGCCAAGGTCAACTTGGAGAAGGCTCAGTCTGAAATGGCGTCTGCGTCTGACGAGGCTGCCAGGGCCGAGGTCCAGATCAACATAGACGCCAACGAGGCAATCGTCAAAGCCCTGGAGTAGACCGCGCTACTGGTCTTTGTGATTTTCGCATTTGTTCCAGGTGTCGTGTTGGTATAAAGGAAATGAAAATTCTCCAACTGTTTCCCGGACCAGTCAAGTCAGTAACTGCAAGATCTCATGCTTGCTTTGTACAGTGGAATGAAATGACCAATAAATTGATTTGGATTTACCTGCCAATAA

Function

NR:

description
ATP synthase subunit delta, mitochondrial-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02134 ATPeF1D, ATP5D, ATP16; F-type H+-transporting ATPase subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588545.2 False 783 mRNA 0.51 5 21587517 21604429
XM_021588588.2 True 802 mRNA 0.51 5 21587517 21604429

Neighbor

gene id symbol gene type direction distance location
LOC110507736 LOC106573601 coding downstream 21794 21535882 ~ 21565723 (-)
cirbp LOC106573597 coding downstream 218629 21362992 ~ 21368888 (-)
LOC110507674 LOC105011525 coding downstream 224727 21357735 ~ 21362790 (-)
LOC118945781 NA coding downstream 345495 21232782 ~ 21242022 (-)
LOC110511465 LOC106573796 coding downstream 394360 21192344 ~ 21193157 (-)
LOC110532081 LOC106573605 coding upstream 81648 21686077 ~ 21733286 (-)
LOC110508721 LOC106573612 coding upstream 506575 22111004 ~ 22203625 (-)
LOC118966627 NA coding upstream 621776 22226205 ~ 22231598 (-)
LOC110508988 NA coding upstream 788549 22392978 ~ 22400323 (-)
LOC110509244 LOC106573616 coding upstream 830246 22434675 ~ 22437595 (-)
G20980 NA non-coding downstream 12060 21572748 ~ 21575457 (-)
G20971 NA non-coding downstream 54403 21532803 ~ 21533114 (-)
G20960 NA non-coding downstream 69488 21517666 ~ 21518029 (-)
G20956 NA non-coding downstream 111030 21476136 ~ 21476487 (-)
G20727 NA non-coding downstream 137093 21450181 ~ 21450424 (-)
G21014 NA non-coding upstream 30116 21634545 ~ 21635023 (-)
G21016 NA non-coding upstream 80494 21684923 ~ 21685296 (-)
G21024 NA non-coding upstream 89901 21694330 ~ 21699240 (-)
G21063 bsg non-coding upstream 188977 21793406 ~ 21800722 (-)
G21062 NA non-coding upstream 198103 21802532 ~ 21805075 (-)
LOC118945319 NA other downstream 498267 21085298 ~ 21089250 (-)
G20266 NA other downstream 787509 20799120 ~ 20800008 (-)
LOC110502937 ccl25 other downstream 1954900 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 2701865 18876547 ~ 18888907 (-)
G21993 NA other upstream 777441 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 1235416 22839845 ~ 22843305 (-)
G23394 NA other upstream 2019597 23624026 ~ 23624349 (-)
LOC110511130 LOC106573631 other upstream 2218271 23821656 ~ 23861029 (-)
G24542 NA other upstream 2618478 24222907 ~ 24226490 (-)

Expression


Co-expression Network