LOC110532081 (LOC106573605)


Basic Information

Item Value
gene id LOC110532081
gene name LOC106573605
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21686077 ~ 21733286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532081
TGATGCTCATAAAAATATTCAGCATTGTTTGTTGTAATGATAGGAGCTAGTTAACTAGTATTTAAATGTATACCGTTATGATAGCACATCCGCATCATTGGTCGTGTGTATTGACATGGTAGTATCGTAGTGTGTATAGACATGGTAGTGAACAAATGCATTTGCACTTTCCATGCATTTCAGTCTCGTGAATTTCATCAAAATGCATATGCATGTGATTGTGCATTTGTATTGCAGATCTGAGGATCCCTACAATGATTCATTGAAACTGGATGGACAGTTGTGCAGGCTTGGCAAGTACCCAGGATTTATTCAGAACATGGATGGAAGCAGAACATTCGATTACCCAAGCTTTGTAAAAGACCTCGTTGAAAATCTATCACCATACACCACATTCACAATTCATTATTACACTTGAATAATAGCAATTATGCAAACAGAACGTAATTACATGGTTTGTAACCAACAACCAAAGCACTCATCACAGCAGTTTCCAGGTGTCACAAGGACATGGCTAAGAAGGATGGAATAAGCCTGTATCATCTGAGCACATAGACAGAGAACCAAACATTCCCTCTTATCAGAGCCAAACTCTGTAGACCTGTAATATTGGACACCAGGTCCACTCACCTCTCTGGTCATACTCAAGCAGTGCTACATTGTCAGCAGGTTAAGGAGAACCTTCTGTTGCATTTCTGCAGTTGCAGCATCCCACATTTCAAAACATGAATCTGCATTTGTATTCATTGTTGGAGTATTGTCCGACCCAGGATATCCAGAAACATACAATACATAAGTATTAAAAACAGTCACATGGCTGAAAGGGGAAACCATGAGTGACGGGGACTTCCATGAACTCATGGACTATTTGGAGAATCGCCTGACCATGGACACCTTCATCCACCGCATCGACTCCACAGAAGTCATCTACGAGCCGCGGAGGAAGAGGGCCAAGCTGATTGGGAAGTACCTGATGGGAGACCTGCTGGGGGAGGGCTCCTATGGGAAGGTGAAGGAGATGCTGGACTCTGAGACACTCTGTAGGAGGGCTGTCAAGATCCTTAAGAAGAAGAAACTGAGACGCATCCCAAACGGGGAGCAACATGGCAAAAAGTATATTCAGCTGTTAAGAAGATTGAGGCACAATAATATTATCCAATTGGTCGAGGTTTTGTATAATGAGGAGAAGCAAAAGATGTATATGGTGATAGAATATTGTGTATGTGGAATGCAGGAGATGTTGGACAGTGTTGATGAGAAAAGGTTTCCAGTTTTTCAAGCTCATGGGTACTTTTGTCAGCTGCTAGATGGCTTGGAATATTTGCACAGCCAGGGAACAGTTTACAAAGATATTAAACCAGGGAATCTACTGCTGACGACGGACGGTGCACTAAAGATCTCTGACCTGGGTGTAGCGGAGGCGCTGCACCTGTTTGCGGAGGACAGGGCTCTCCTGCCTTCCATCCCCCAGAGATTGCCAATGGCCTGGACACCTTCTCGGGGTTCAAAGTGGACATCTGGTCTGCTGGTGTCACACTATATAACATAACAACCAGCCTGTACCCTTTTGAAGGGGATAACATATATAAGCTGTTTGAGAACATTGGAAAGGGACACTACAGTGTTCCAGAGGAGTGTGGCCCTCTGCTCTCTGGCCTGCTAAGAGGAATGCTTGAGTATGACCCTGAGAAGAGGTtctcaatacaacacattagacTACACAACTGGGTGAGGAAGAAACACCCTGCCATGGAACCTCTGGTGTCAATGCCCCCCAGTGCTGACGGGAGGGATGCGTGGTGTAGCATGACTGTACTGCCTTACCTGGAGCACCTGCACGGCTACACCGACCAGGATGATGATGAACTCTTCGACGGAGCTGGAGACATCTACTCTCAGGGTTTCACTATGCCAGGACGGGTGCATGAGGACGGGCTGGAGCAGAACGGGTACCAGGGGGGGTGTGTGGGGCTGGGGCTCAGGACCCTGTGTGTGaacgacacagagacagaccaggaccACTACCCAACCACCAGCAGAACCAGGTCCCGATCAGAACGcctctccagctcctcctccAACCCCTCACGCAAAGGAGTGTCCACCTACAGCTGCATCCGCAAGCTGTCCAACTGTAAGCAGCAGTGGGAACAGCCCCCGAGTCCCCCAGCCCTGAACACACACTGGAAAGGTGAGGAGAAGGAGTAGTCATACAGGACACCTGTACAATGTTGTGGTCTACATCTAATTATAaattgggtggttcgagccctgaatgctgattggttgacaaccgtggtatatcagaacgtgtgacaaaacattt

Function

NR:

description
PREDICTED: serine/threonine-protein kinase STK11-like isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0097009 energy homeostasis biological_process
GO:0060575 intestinal epithelial cell differentiation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532081 True 2326 mRNA 0.47 9 21686077 21733286

Neighbor

gene id symbol gene type direction distance location
LOC110508066 LOC106613744 coding downstream 81648 21587517 ~ 21604429 (-)
LOC110507736 LOC106573601 coding downstream 120354 21535882 ~ 21565723 (-)
cirbp LOC106573597 coding downstream 317189 21362992 ~ 21368888 (-)
LOC110507674 LOC105011525 coding downstream 323287 21357735 ~ 21362790 (-)
LOC118945781 NA coding downstream 444055 21232782 ~ 21242022 (-)
LOC110508721 LOC106573612 coding upstream 377718 22111004 ~ 22203625 (-)
LOC118966627 NA coding upstream 492919 22226205 ~ 22231598 (-)
LOC110508988 NA coding upstream 659692 22392978 ~ 22400323 (-)
LOC110509244 LOC106573616 coding upstream 701389 22434675 ~ 22437595 (-)
LOC110509312 NA coding upstream 730109 22463395 ~ 22487550 (-)
G21016 NA non-coding downstream 781 21684923 ~ 21685296 (-)
G21014 NA non-coding downstream 51054 21634545 ~ 21635023 (-)
G20981 NA non-coding downstream 68704 21575784 ~ 21617373 (-)
G20980 NA non-coding downstream 110620 21572748 ~ 21575457 (-)
G20971 NA non-coding downstream 152963 21532803 ~ 21533114 (-)
G21063 bsg non-coding upstream 60120 21793406 ~ 21800722 (-)
G21062 NA non-coding upstream 69246 21802532 ~ 21805075 (-)
G21151 NA non-coding upstream 147604 21880890 ~ 21902419 (-)
G21155 NA non-coding upstream 153363 21886649 ~ 21887089 (-)
G21183 NA non-coding upstream 194350 21927636 ~ 21927878 (-)
LOC118945319 NA other downstream 596827 21085298 ~ 21089250 (-)
G20266 NA other downstream 886069 20799120 ~ 20800008 (-)
LOC110502937 ccl25 other downstream 2053460 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 2800425 18876547 ~ 18888907 (-)
G21993 NA other upstream 648584 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 1106559 22839845 ~ 22843305 (-)
G23394 NA other upstream 1890740 23624026 ~ 23624349 (-)
LOC110511130 LOC106573631 other upstream 2089414 23821656 ~ 23861029 (-)
G24542 NA other upstream 2489621 24222907 ~ 24226490 (-)

Expression


Co-expression Network