LOC110508721 (LOC106573612)


Basic Information

Item Value
gene id LOC110508721
gene name LOC106573612
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22111004 ~ 22203625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589510.2
GTGCTTCCTTCGCCCTCGTGCGacaatgtttgcaaacacagaaaggggtATACGCATTCCCCTctgtatataaaaataaatatttgtatgCTCTATGAACATCACCCTGCCATCAGTGGGAAACTCGATGTGTTTGTTATATTGCAGTTACATTGCAATGCACTGATGGTATGCGCCAGTCGTGGGGATAGAAGCATCCAGCCATCGCGCGACTCTCCATCATCATCACACATAGAAAACTGCGAGCCGCTCCGGCGGTGCAAAGCAGCGCCTCGCTGCCCTGCCACGCCGCTGCATGGACAGCCAACACAATGGCAGAGGATTTGGGGGTGCATCTGTTTTTAGCAACAACAGATAGCATGGATAATCCCGCCTCAACCGATTCAGCTCTCGTCGTTACGATGATTAGAGCGCCGCTGTCGGCTCGCCGGGCATGATAGGCAGGAGAGAGAGCCGTGCGGGAGCGGGGCTTCTCGTTTTGACAGTACTTTTTGAGAGGGAAACGCAAAGAAGCGTGGAACAAGTGGACTGTGGCTTGGGGTCCTTCAAAATGGATATAGATCCCTGTTTGCGGTACTATTTCCAGCACCCCTGGTCTCGTCTGTTTGTGGCCTACCTCGTCACTTTCTGCAACTTCCTTATCTTTGCTGAGGACCCTGTCTCCCACAGCCAGACAGAGGCTCACATGATCGTGGTGGGAAACTGCTTCTCCTTCATAGTGAACAAGTACCCTGGTGGAGGATGGAGCGTCCTCAAAGTCATCTCGTGGCTGATGGCCATTGTCACCGGAATGTTTGCCGGGAAGTTCATATTCCACCGCAGGCTCTTTGGTCGATATCTGCGTCTGAAAATGTTCCGTGAGGATCACGGCTCCTGGATGACCATGTTCTTCAGCACCATcatcttcctcttcatcttctCACACATCTACAATGTGATCCTTCTAATGGCAGGAAGCATGGGgcCTCACATGGTGACAGAGTACATGGGTATCAGGAATGAGAGCTTCATGAAGATTGCAGCAGTAGGGACGTGGATGGGGGACTTTGTGACTGCATGGATGGTCACTGACATGATGCTCCAGGACCAGCACTACCcagactggggcaaagctgccagAAGGTTCTGGAAACAAGGCAACCACAGGATCGTCCTCTTCTGGACGGTCCTGATCACTCTGACATCGGTGGTTTTGTTGGTCATCAGCACTGACTGGATCAGCTGGGACAACCTGAACCGGGGATTTCTGCCCAGCGACGAGGTCTCCAGGGCCTTCCTGGTATCCTTCATCCTGGTCTTTGACCTGCTCATTGTTATGCAGGATTGGGATTTTCCTCAGTTCATGGGCGACCTGGATATGAACCTGCCTGGCATGTCCACCACTCAGCTCAAGTTCAAACTTCCTGTCTGCAAGAGCATCTTCAAAGAGGAATACCACATCCATATCACAGGTAAGTGGTTCAACTACGGCATCATCTTCCTGGTGTTAATCCTGGACCTGAACATGTGGAAGAACCAGATCTTCTACAAGCCCTACGAGTACGGCCAATACGTTGGTCCAGGGGAGAAGATCTTCACTGTGGAGGAGCCCAACACACTGGGTGACTTCAACCGCAGCACGCTCACCTACAAGTGGCGCTCCAGCCACGTGGACCCGCTGACCAACCGCTCGTATGTCGAACGGGACATGTTCCTGCATAGCCGCTACGTGGGTGCCAGCCTGGAAGTCAAGTGCTTGGCCTTCATCCCCAGCCTGGCTGCCTTTGTCCTCTTTGGCTTCTTCATCTGGCTGCTGGGACGTTTTCAGGACAGCGAGACCTTCCCGGAGGGCCAGGTGGACAAGACGTACGAGAGGATCAAGAGGAAGTCTCCATCTGAGTATAGTAAGGACATGGGACTCACGCCAGAGGAGGTGCACATCTCTATGAGCGAGGCGCTCAAACGTTCCGGAACCCCCATGCTGCTGTCGGTGGATGGGCATCATTTTGCTCTGCACTCTGCCACCTCCACCAACTCCACTTCGCCTGTTTCCATGGAGACCCAGGAGACGCATCCCAGCATTGTCATCGAAGGCACGGAGCCAAGAGAGCCGGCGGTTTCCTTTGATGTCGGCAAACTGTCACCGCCCTGACCTTACTGCCCTGAGGGGAAGTACTGCTATGCTtctactgacagacacacagcctggagggaggagagcagacacaggagagagaccaaaCTGAAACTCAATTTCAGTCTAGATCTTTTTCAGTCTGGGTAGATTTTGAACCCAACACTGATTATTCCTGGAGCAGGAGGATGTAGCTACAATGGCCACTTTGTTTTGCTACTGTGATATCCCTGATGGCATTTtatgattattatttatttgaattgtaaAACCTCTAAGCTGACACCAACACAATGACAAACAGCTTATTTTAACCTCCCTCACTGTAAAGTTCTATTGTCAACACGGTGCTCTCGCTAGATTTGACGTTTTTACAATATCAAGATGTTTTCTCTTTTATCGTGACATATTTTGGTGCCTATGTGGGGAACTATTTCTACAGTCGATGTATGACACAATGGTCATGGCTAGTTTATAGTGTACAACTTGAGTATTACAGTTGAAGAGGTGCCTTGATAAACCCATGCCCACTAAAGGACAGCAACATAGTCTATACCATAGGCAGCAAAACAGAAGACGTCTGATAATGTGTGTCTGTCTTGTTTATTTCAATGTTCCACTTCACAATGTTGGACAATGTTTACCCTTTCAGACTTTATCACAGGTTTTTGAATTCATTTGCTATCTTGATCATTCTTACATATCCCATCTTCATGTGCCTCTTCTCTTGTAGTCATAGAAATGACTAGATTGCTAAACATCGTTACGATGATGATAATACTATGACCACCTCTTCATTTTCTGGTTGTATTATCAAATGCAAGATAAAAGGCATAAGCTATTTTCAAATAACATTAAAAAGTCACCTCATGATCACCTATCTGGTCAAAATACTCAGATGTAATGCCAATTAGGTCAGAAAGGTCATTTGCCCTTGTTGGGGTAAATGTGCTTTTGttatagaaggagagagaagaacacCAAATCTAACTGATGCACCTTACCCATATCATATCCCCCAGCAGTATATGTACCACAAGTAAGACCTTGGTTTGAAGCCAGTATTGGGGTATGGATTGGTTTGAGAGAACACATAGAGAATGTGACCTCTTACAGCTGACAAGCAAAAGAGAGTGGGAGTTTTTAGTATTTATGAGAGTTATGAGAGTTATTATATCACATACGTTAAGTGTGCAACTACTGTATACCAATGCTCTGTTATTTAAGTGTTTTCTAACAAAGTGTTGTGCGTCTGAGtttgtgcgcgcgtgcgtgtgtatgcGTCAGAGACAGCGAGAGCTGACAATTCTGTGAAGAGGTCAATGTAGTTCATGTAAGTGGCGTATGGTCCTTGGTTCAGTGATCCCCCTTCTACACTTTACAGGTCAGAGTCCTCATTACAGCTCAACTTATTTCATTTTGGAGATACGGCTTCGCAACAAGGCAACAAATTGCTAAATGTATGAGGCAATGGCTAAATGAGTGTGTTTATCTCACTAGAAGTGATCTAGTGATATGTTTGTAAAATATTGTGCTTTGGTTGGAACTGAATGTTCCCCCTGCTGTTATACATGGTATTGTGATGCATAACTGACAGCTATTTTgcattcttgtgtgtgtgtgtggtttttaaACAAAGGATATCTCTTTTAAACATGTTGACGCAATAAATGTCTGCCGAGTAATGGTATCaataaaatgtatacattttgctACATACTAGGTTGCGGTGCCC

Function

NR:

description
transmembrane protein 117-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589510.2 True 3848 mRNA 0.47 8 22111004 22203625

Neighbor

gene id symbol gene type direction distance location
LOC110532081 LOC106573605 coding downstream 377718 21686077 ~ 21733286 (-)
LOC110508066 LOC106613744 coding downstream 506575 21587517 ~ 21604429 (-)
LOC110507736 LOC106573601 coding downstream 545281 21535882 ~ 21565723 (-)
cirbp LOC106573597 coding downstream 742116 21362992 ~ 21368888 (-)
LOC110507674 LOC105011525 coding downstream 748214 21357735 ~ 21362790 (-)
LOC118966627 NA coding upstream 22580 22226205 ~ 22231598 (-)
LOC110508988 NA coding upstream 189353 22392978 ~ 22400323 (-)
LOC110509244 LOC106573616 coding upstream 231050 22434675 ~ 22437595 (-)
LOC110509312 NA coding upstream 259770 22463395 ~ 22487550 (-)
LOC110509621 LOC106573620 coding upstream 288935 22492560 ~ 22574938 (-)
G21223 NA non-coding downstream 154523 21956271 ~ 21956481 (-)
G21221 NA non-coding downstream 155189 21954662 ~ 21955815 (-)
G21212 NA non-coding downstream 160042 21950710 ~ 21950962 (-)
G21204 NA non-coding downstream 171601 21939108 ~ 21939403 (-)
G21183 NA non-coding downstream 183126 21927636 ~ 21927878 (-)
G21827 twf1 non-coding upstream 8818 22212443 ~ 22215444 (-)
G21900 NA non-coding upstream 45208 22248833 ~ 22249067 (-)
G21904 NA non-coding upstream 49337 22252962 ~ 22253252 (-)
G21913 NA non-coding upstream 61591 22265216 ~ 22265429 (-)
G21917 NA non-coding upstream 64137 22267762 ~ 22267965 (-)
LOC118945319 NA other downstream 1021754 21085298 ~ 21089250 (-)
G20266 NA other downstream 1310996 20799120 ~ 20800008 (-)
LOC110502937 ccl25 other downstream 2478387 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 3225352 18876547 ~ 18888907 (-)
G21993 NA other upstream 178245 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 636220 22839845 ~ 22843305 (-)
G23394 NA other upstream 1420401 23624026 ~ 23624349 (-)
LOC110511130 LOC106573631 other upstream 1619075 23821656 ~ 23861029 (-)
G24542 NA other upstream 2019282 24222907 ~ 24226490 (-)

Expression


Co-expression Network