LOC110508905 (twf1)


Basic Information

Item Value
gene id LOC110508905
gene name twf1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22212332 ~ 22226104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589846.2
gatgatgatgatgacgacacATGAATTTAGCCTAGTCCGCTTCCTACTTCCTTATCCTGGCTTGGTTCTCTGCTTCATCAACCTTTCTTGcgataaaaatacaaaatgtccCACCAAACGGGCATACAAGCTGGTAACGACGTGAAGGACATCTTTGCCAGTGCGAGGTGTGGAGACCAATATCGACTCTTAAAGATTGTGATTGAGGATGAGCAGCTAGCTTTGGGCGAGACCAGGCAAGCATCAAAGACATGGGACCAAGAGTATGACTCGTTAGTCCTGCCTCTACTACAGGACGACCTGCCATCTTATATCCTGTACCGACTGGACTCCTCCAACAACCAGGGCTATGAGTGGATCTTCATGGCCTGGTCACCTGACCACTCTCCTGTGCGACATAAGATGTTATACGCTGCTACCAGGGCCACACTAAAGAAGGAATTTGGTGGGGGGCTTATCAAAGATGAGCTCTTTGGCACTACAAAGGAGGATGTGTCTCTGAGTGGCTACAAGAAGTACCTGGTGACCAAGGCGGCACCACTACCACTCACTGCTGCTGAGGAGGAACTGAGACAGATCAAACTCagtgagGTGCAGACTGACATCAGTGTAGACACCAAGCAGCAGACACTGCAGGGGGTGGCGTTCCCCATGCATGGAGACGCGTTCGAGGCGCTCAAACGATTCAGAGACAAGCAAGTCAACTACGTACAACTTGAAATAGACTTTGCCAAAGAACTCATTAGGTTGTCTAACACTGAACCAACCGAGGTGAAAGACCTGCCCAAGAGGATCCCCACAGAATCTGCTCGCTATCACTTCTTCCGCTACAATCATTCCCACGAGGGAGACTACCTGGAGTCCACAGTGTTCATTTATTCCATGCCGGGGTACAAGTGCAGCATCAAAGAGAGGATGCTCTATTCCAGTTGCAAAAATCCCCTGGTGGACATGGTGGAGAACAACATGCAAATTGACATTTTGAAGAAGCTCGAGATTGAAAGTGGGGAAGAGCTGACTGGTGACTTCCTGTATGAGGAAGTTCATCCCAAGCAGCACGCACACAAGCAGGCCTTTGCCAAGCCCAAGGGCCCCGCTGGGAAGAAGGGAGGACGCCGCATCACCAGACCGCCCGGAGATGGAGAAGAGGATGACtaaacagaacccccccccccccccacacacacacacacacccacacgctcCATAATGGAACATTccaagagatggagggaaagattaTTTGAAACAACCTCTTGtaaaaaattaattaaataaaaataaaataaaatagaaaaactTCTAAACCCTCGAAGCTCACCCAGAGACTGAACTATGCACGCCAATGGACAACTGAGCTGAAACACACTTGAGAATGTCCATTTGTAGCCTGCGATTCATTCAAAGTATTTTACAGAGCTATTCAGAGGTTAGAACAAGTTAAGTAAGAAAGGTTTTTACACTGTTGCcgagaataaaaaaaatatgttagtGTGACTAATGTGAATTGTGCCAATGTGACGAATCCTCCATGAGTTGAGTTCACATGCTTGCAATCATTCCTTGCATTCCTCTTAGATCAATGCCAATTTGTTATGTGTTTCCTGTACCTAAAGTTGATAAAATGTCTCCATCAATATGTGGGCACAGCTATGAAGAGGTCCAAACCCCACTTAAAGATGTAATATTTGCTCCTgtcatttttcttattttttaaaaaatattgGAACATTTCTTTTTTGATAACTGTGGTTTACATAAAACACATCTGCTGAGAAACGTATTTTTCTATGCAAGTGCTGTACATGTTGTAGGTGTTCTGCTCTGTCTGTGATGAAAAGGTATTGTCTGTACTGATCTGTCTATCTATAGTGTCAATGAGGGTCACGTAACGGAGAGAACAGGGGCTTCCACTATTTCATAGCTCTGATTAGATTCGAGGAAGCTAAGTATGCTACTGTGCCAGCTCCTATGGTGTGAATGCAAGGTGGGAGTCCCAGAGACAGTGATTCCAAATGGAATTTCTTTCTGCCACAGTCAATTGTCTACTGATTTATTGTATGGCAAATCACTAGTTTAACACCTCATCTTCGGACAAGGGAATACACTCTCATGAGAACTGTCTTGTTTGGTCTTAAGttgtttatttttcttaaaacagcTGCTTtttaaaaaggaaaataaaaatatttacatCAAACATA

Function

symbol description
twf1 Enables ATP binding activity and actin binding activity. Involved in regulation of actin phosphorylation. Located in cytosol and nucleolus.

NR:

description
twinfilin-1-like

GO:

id name namespace
GO:0030837 negative regulation of actin filament polymerization biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K08870 TWF; twinfilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589846.2 True 2204 mRNA 0.44 9 22212332 22226104

Neighbor

gene id symbol gene type direction distance location
LOC110508655 LOC100380741 coding upstream 104475 22024629 ~ 22107857 (+)
LOC110508592 LOC106613751 coding upstream 300816 21809564 ~ 21911516 (+)
LOC118946025 LOC106604946 coding upstream 385203 21819189 ~ 21827129 (+)
LOC110508526 bsg coding upstream 409429 21792456 ~ 21802903 (+)
LOC110508358 LOC106573608 coding upstream 427088 21779741 ~ 21785244 (+)
LOC110532091 LOC106573613 coding downstream 54985 22281089 ~ 22422282 (+)
zgc:110339 LOC106573615 coding downstream 206206 22432310 ~ 22435150 (+)
LOC110513869 LOC106560949 coding downstream 394562 22620666 ~ 22623478 (+)
LOC110510174 LOC106573623 coding downstream 487570 22713674 ~ 22869379 (+)
LOC110511054 NA coding downstream 1561389 23787493 ~ 23793379 (+)
G21299 NA non-coding upstream 159980 22052085 ~ 22052352 (+)
G21229 NA non-coding upstream 249175 21962939 ~ 21963157 (+)
G21214 NA non-coding upstream 259460 21952531 ~ 21952872 (+)
G21210 NA non-coding upstream 263788 21948188 ~ 21948544 (+)
G21203 NA non-coding upstream 273003 21939123 ~ 21939329 (+)
G21528 NA non-coding downstream 13787 22239891 ~ 22243715 (+)
G21533 NA non-coding downstream 23247 22249351 ~ 22249637 (+)
G21545 NA non-coding downstream 41651 22267755 ~ 22267975 (+)
G21573 NA non-coding downstream 90387 22316491 ~ 22316704 (+)
G21578 NA non-coding downstream 100326 22326430 ~ 22326650 (+)
G20773 NA other upstream 644144 21567545 ~ 21568188 (+)
G19400 NA other upstream 1902434 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 1935437 20276590 ~ 20276895 (+)
G19359 NA other upstream 1969457 20242645 ~ 20242875 (+)
G19083 NA other upstream 2296500 19915586 ~ 19915832 (+)
G23109 NA other downstream 1312292 23538396 ~ 23538863 (+)
G23135 NA other downstream 1348488 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 1646917 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 2278551 24504638 ~ 24506125 (+)
G24123 NA other downstream 2324421 24550525 ~ 24552435 (+)

Expression


Co-expression Network