LOC110532091 (LOC106573613)


Basic Information

Item Value
gene id LOC110532091
gene name LOC106573613
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22281089 ~ 22422282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970373.1
TTTAAGGTGCAAGGGGTGTTCTATGGATGGCGAAGGAAAAGCTTACTTGGCACTGATCCCTCCTTTCCATATAGACGTAGCTTACGTTAGGcatcaaatactctgtaatgtatCGTAAATAGTGCGTGTTTGCAGAGGATAGTGGATGCATGTTTAATAATGCGATGAGGCCAATGCACTTTGCAAGACTTGTGCTGCAGAGAGCCTCCGCAGATCCCACGACCTGTTGCTGAAGccgggaggagagagaagaggcgCTTGAGAAGGATAGTACTGCATTGGACACGAGAGCCGGTGGTTTCTTCGCTGAGGAAATCATGCAGTTTGCAATCTGGCTGGTTGGACTAATGTGTCATCTGTCAGCACTTGTCCGCAACTCCTTGGAATACCGATTGCATCCGAAACAAGAAAATTTCATCAAACAGTTGTCGTCCTATGAAATTATCACCCCGCTGCGGATAAATGATTTCGGAGAATCATTCCCCCACACATTGCACTACAAAAGGAAACGGAGAAGTATACATGCAGATTATTCGGCTGGTTTACGTGCTCACTACAGAATTGACGCATTCGGACAACGCTTTCATCTCAATCTAACCGCCGACTCCGGTTTTATCGCCCCCACATACACTGTGACACATTTGGGAGCGGAATACAGCAAATCAACTGAGTCCCGCCAACAAGACCTCAGCGATATGCGTCACTGCTTTTTCCGCGGACATATCAACGCCAATATTGAATCAACCGCTGTCTTCAGTCTGTGCACTGGCCTTatGGGGACTTTTACAACCCAGCATGGTGAATACTTCTTAGAGCCCCTGATGAAGGCGGATGAGGGGGAGGAGTACGACGAGGAGCACAACAAACCTCACCTCGTCTACAGacaggacaggaagaggagagagagtcctgcCAGTGAGCCCACACAACCCTGCTCAGCTTCAGGGGAAGGATCGGAAAggccagttgtcaattttcagaGCAACAGGACTATGGTAGAAGAGCTGGATTCCCTGAGAGACCGAATGGGCATTCACCACACCGGCTACGAGATAGACCGCCTCTCCACCACCTCCAACTCCTCAGACCCCCGTCACAGAGCACCGTCCAGGCAGAAGAGGTTCCTCTCATACCCCCGCTATGTGGAACTGATGCTGACTGCTGACGTCAAGATGGTGCACCACCACGGACACAACCTCGAGCACTACATCCTAACAATCATGTCAGTAGTTGCTGCGGTCTACAGGGACCCTAGTGTAGGAAACCTCATCAACATCATGATTGTCAAGCTGGTTGTCATCCACAATGAACAGGATGGACCCTCAATAAATTTCAATGCTGCTACTACCCTCCACAACTTCTGTGTCTGGCAACAGACTCAAAATGTCCAGGATGACAGTCACCCTTCCCACCATGACACTGCACTCCTGATCACCAGGGAAGACATCTGCCGAGCTAAAGACAAGTGTGATACATTGGGGCTGGCGGAGCTGGGGACCATGTGTGACCCTTACCGGAGCTGCTCCATCAGCGAAGAGAACGGACTCAGCGCCTCCTTCACCATCGCTCACGAGCTGGGCCATGTGTTCAACATGCCCCATGATGACAACCCCAAATGCAGGGAGGCAGGCATAAAGCACCAGTATCACGTCATGGCGCCCACCCTCAACTACGACACTAGTCCCTGGTCATGGTCAAAGTGCAGCCGCAAGTACATCACTGAGTTTCTGGACACAGGGTACGGAGAGTGCCTGTTGGACGAGCCAGTGAGCAGGACGTACGAGCTACCTAACCACCTCCCTGGTCAGATCTACAATGCCAACCGACAGTGTGAGCTCATGTTTGGTCCCGGATCCATGGTCTGCCCTTACATGAAACAGTGCAAGAGGCTTTGGTGTACGAGTGCTGAGGGGGGTCATAAAGGGTGTCGGACACAGCACATGCCCTTGGCTGATGGGACAGACTGTGGACATGGAATGTACTGCAGACATGGGAAGTGTGTGAACAAGGAGCTGGACCTGCGGCCGGTCCATGGGGAGTGGGGCCCTTGGGGGCACTACAGTGTCTGTTCCAGGACCTGTGGAGGAGGCACCAGGAGTACCTCCAGAGACTGCAACAACCCTGAGCCCCGGAATGGAGGAAAGTTCTGCGTGGGTCGAAGGATGAAGTTCCGGTCCTGCAACACTGAGCCATGCCCCAGAGGACGGAGAGACTTCCGCGAGGAGCAGTGCTCTCAGTTCGACGGCAAGCACTTCAACATCAACGGTCTACCTCCCACCGTCCGCTGGGTGCCCAAGTACAGCGGTATTCTAATGAAGGATCGGTGCAAGCTCTTCTGTCGGGTTGCTGGGACGATGGCCTACTATCAGCTGAAGGATCGCGTCATCGACGGCACGCCGTGTGGCCCAGACACCTACGATATCTGTGTTCAAGGCCTCTGTCGGCAAGCAGGCTGTGATCATGTGTTGAACTCCAAGGCGAAAAATGACAAATGTGGAGTGTGTGGAGGGGACAACTCCTCCTGCAAAACCCTTGCTGGGACCTTCAACGATGCTGAGTATGgtTACAACACAGTGGTGAGCATCCCTGCAGGAGCCACCAACATTGATATTAAACAGGTCAGCTACTCTGGGAAGTCGGAGGATGACAACTACCTcgCTTTATCTGACAGCCATTCTAACTTTCTCCTGAATGGAAACTTTGTGGTGGCCATGTTCAAAAGGGAAATCCCCTTCAAGGGAACCGTCATTGAGTACAGCGGCTCAGACACCATTGAGGAGCGCATCAACTGCACTGAACGCATCGAGGAGGAACTCATCCTACAGGTCCTGTGTGTGGGGAACCTGTACAACCCAGATGTGCGCTATTCCTTCAACATCCCCATCGAGGAGCACAGGGAACAGTTTGTGTGGGACCCCTCAGGCTCCTGGCTGGATTGTAGCCGCATGTGTCAGGGTGAACGACGGCGCAGGGCAGTATGTGTGAGGAAGAGTGACCACCTGGGGGTTTCTGACCAGCGCTGTGAGCCTCTACCCCGTCCCAACGCTGCCACTGAGCCATGTAACACTGACTGTGAACTCAGGTGGAATGTGGCAGGGAGGAGTGAGTGTTCTGCTAAGTGTGGCCCTGGTTACCGGACCATGGACGTGCAGTGTATGAGGTACAGCTTGCTgaagaggcagagtgagagggtggaagggagggcCTGTTCTGACCTACCTAAACCCCAGGCCAGGGAGTCCTGCCACGGGGACTGTCTGCTCAAGAGCTGGCAGTACAGCGCCTGGTCCCAGTGTTCTAAGACGTGTGGTCGTGGGGCCCGTACCAGGGACTCTTACTGTATGAACAATCTGGGGAGGAGACTGGTGGACAGGGAGTGCAGTGACTACCAGAGGATGATCGCGGAGAGCTGCAACGACCAGGCCTGCCCTGACTGGTCAGCCAACGACTGGAGTGAGTGCTTGGTGACGTGTGGGAAGGGGATGAGGCACAGGCAGGTATCCTGTAGTGtgggggtaggagaggagaaTCTGAGTGAACACTTCTGTGACCCCAACACCAAGCCTCTAGCCGTGGGGAGCTGTGAGCTGCCAGATTGTGCCTCCTGGCAGGTCGGAGTCTGGGGACCGTGTGCAGTGACGTGTGGCCATGGTTACCAGATGcgggctgtgaggtgtgtgtcAGGGTTGTATGGGGACACGGTAGATGACAGGAAGTGTAACGCAGCATCCAGACCCAGGGACAGCCAGGACTGTGAGATGGCACCGTGTCCCTGGGCCTCTCCTCAACACAGCACTGTCCGCCCTGACACCTCTGGTCAGCTCCTCACACAGTGGAGATATGGCTCCTGGACCACAtgcTCTGTCTCCTGTGGGAAGGGGAAGCGTGCCCGCTATGTCAGCTGTCGGGACGCCCAGGGTGGAGTGGCAGACGAGTCCTACTGTGCCCATCTGCCCCGGCCCCCAGAATCCTCAGCCTGCTTCAGCTCGTGTGGCCAGTGGAGCTCCTGGGAGTGGTCTCCTTGTTCAGTGACGTGTGGTGTGGGCCGGGCCACCAGGCAGGTGGAATGCAGTAACTACCATCACCAGGTGGATGAGTCATTCTGCGACCAGTATGAGAGGCCCAGCACAGAGCACGAGTGTATGGCCACCCCCTGCCCCTCCGAGTACCGACAGAGGCCCAATGACCAGCCCTACAGCCCCCACAACCCCGCCAGCCACCCGGGCCATGGCAGTTGGAACGTCCCCTCGGCAGACAACCAGTGGAGGACGGGACCCTGGGGAGGATGCTCCAGTACGTGTGCAGGGGGCTCCCAGAGGAGGGTGGTAGTGTGTCAGGATGCGCAGGGTCGCAGCACCAGCCACTGTGATCAGAGGGTCAAACCTGCAGAGTCCAAGAGCTGCGACTCAGGACCCTGCCCTCTGTGGAACTACGGCATctggggagagTGCACCCAGACGTGTGGCGGAGGCAGGAGGACGCGCCAGGTGGTGTGCCAGCGGCCCAACGGACAGAGACTCAACGACCACAACTGTGACGTCCTGGACAAGCCTCCTGACATAGAGCAGTGCAGCCTGCACCTGTGTCCGGGCAGCACATCCTGGCACCGCCGACCATGGAAGCCGtgTTCTGTGAGCTGTGGCCGGGGGACCAAGCAGCGGGAGATAACCTGTGTTTACCAAAACCAAACCCAAATAGAGGAAGAGCACTGCAGTCATCTGTCATGTCCCCGGACACAGAAGGCCTGCCGAGCCCAGGGATGCCCCAGCTGGAAGGCCAACAGGTGGAGCAAGtgctCTGCCACCTGTGGAGTAGGGGTCCAGAACAGAGATGTGTACTGCAGACTGAAGGGTTCAGGGCGGGTGAGAGAGGAGCTGTGTGGTTCCCACAACCGTCCGGCCACTGCCCAGCCCTGCCAGGTTACTGAGTGTCTCCATCACACCTGGGCAGCTGGAGAGTGGCAAGATTGTAACGCCACCTGTGGAGAAGGTATGAGGAACAGGAAGGTTCTGTGTGTGGGGGCCGAGCTGACCCCAGTCCAGGACACCCTCTGTGACCCCtcgtcttgccctgccctgcacCAGCCCTGCAGCAGAGCACCCTGCTACCACATGTGGATAACAGGAGAGTGGTCACAGTGCTCTGCTAGCTGTGGCGTGGGCTACCAGCAGCGTATAGTGTCCTGCTCCATGAAGCCCTCCTCCACCCTGCACCCTTATGATGCCCAGTCCTCCGCCCTGTCCCACCCTCACTGTCCAGAGCCTCCCCCACCTAGCACCAGGCAGTGCCTCCTTTGGGACTGCCCACAAGCTGCCTACTGGAAAGTTGGCCCATGGAGCaagTGCTCACAGACGTGTGGAGCGGGGGTAATGGAGCGCAGGGTAGAGTGTCTGTTCTCTAAAGGCCAACCGTCCAAACACTGCCGTCCAGCCGAGAGGCCCGAGTCACAGGCCACCTGTcgcgagagagagtGTCAGTTGTTGACATCCTGCAGAGAGGTCCAGATGATACAGGGGGTGAGGATGGATGGGGAGTACTACCTGAAAGTCAAGTCCAGGATTCTACAGATCTACTGTGCTGAGATGCAGACTGATTTCCCTAAGGAATATGTTACGCTGCGGAGTGGTCAGACAGACAACTACTCGGAGGTCTATGGATACAGGTTGCTGAATCCTTTTGATTGCCCCTACAACGACAGCAGAAGGCAGGACTGTGACTGCAGGAACGATTACTCTGCAGCGGGATACACTCTCTTCCATAAGGTCCGTCTGGACATCATCTCACTGAGGATAATGACCACAGACCTGAAGTTTTCTCAGACCCTGTTTGGTCGTCCCGTCCCCTTCGCCACAGCAGGAGACTGCTACAGTGCTGCCAAGTGTCCTCAGGGCCAGTTTAGCATCAACCTCATAGGGACTGGTCTGAAGGTGGCTGAGGCAACCAAGTGGACCTCACAGGGCAACTATGTCTCTGTCAAAGTCCACAGATCAGAGGATGGGGCAAGAATCTATGGTCGCTGTGGTGGGTTCTGTGGGAAGTGCATTCCCCAGCCTCACAACAGCCTGCTGGTTTATGTCCAGTGATGGTCAGGGACCAAACCCCAACCCAACCATCTCCCAAGGGTCTCCCAGTGGGCTCTCAACATTCTCCCAACATCAGACCAGGAAGTGAAACCAGAGCGTCTGGGGATCCAATGCACTTAATTTGTGAAGGTGGCCATCCCTTTCCTCCCTTCATCACTAGGGTTTAATGACAGGAACCTAGTTACCAAGATTTACTGCCCAAAACCACTCCCTTTTCCCTGGAAAAATAACTGCGAGAAACCGGTAAATTATAATCAATTATTTATATCAATGAAACTGTTAATTAtatgcaatgtctaaatctggTTTCTCTACGGCCTTCTCTCTGCATGATCAATCATCAATGCTCATGGTAGGGACAAacagcccatctcagtatggagtGCAGTTCACAATGCGTGTAGACCTATCATCTCATCATAACTTTTTTTCTTGTGataggtaggcctacattttctGCAGCATAGCCTATTCTACAGTAATATAAGGACCGAATACCCATCTAATTTACATATCACCATTGTGCTTTCGGGAGTCATCATATTTTGTAATTGTAAAGATTTGTTTTTATTATTgcagctgcagagttttaaaacagcctaTCACTCGAATATCGTTGATTTAAATCCAAGCATGtgcaaacagtctctctctccttcaagatAGATATATATAGCTATAAAGGGTCCTTCAGCAGAACCAATGACTCTGAAGATGAGCTCCGTCTGTTACGTCTGAACTCACTAGTGTTTGTAATTGTAATGGTAACCAAATACCTCTGTGCATTGGAATGTCAAAAGCAGACTGTCAGACAATCTCACATATTCCAGCATTGTAGAGTCTCGCATAAAGGGACACAATCATATTTTGGGGCGGGAAGTAGCAACACAGATGCACAGTACAGAGCTATGGGAAGAATCCTCTCATGGTTTCTAGTAAGAGCTTACTCATCTCATAAGGGTAAAATGTTCTTATGGAACTCTGAAAGGAAACATGAATTAGTCATTATAGAACTGGTACAACTATTTACGTTTTTATACAGTCAGCAAGACAACTTTTTGTTGGGTAAATGGAACATCTCAATAAATATTTCAATTGTATTAACTTATAGTGTTATGGAACAAGGGTAATTATGAATTCCTGCAAAAATGTTCTGATAAATTATGTTTTTGTTGTGATTAGAATAGTAATAACCCCAAATGATATAAATTATATAGCTTAAAAATGTTACAAAGATCAAGGAAGGAGAATTCTCCGGATCAGAATATACGTCCagacaggggcgcaactttcactggggatggggggacatgtccctcccacattctgaaattgcattttgtccagttttatcattggaatgtgatacaaaacgaggcaatcgtgtgctttaggaccatgcagacgcCTCCGAGTggttgggtaggctgtttggagtgtttatccgacagaataacattttaaaattatGTCCCCACCACTTCTAAAACGAAAGTTGCGCCAGACATGGGTTTTTCGGGAAAGAATCATTCGCCAATCAGTCAGCTAGACTTTGTGTCCAACTGTTGTTGTGTATTCTTCTACTAATGGTCACCCAGGCTTGCCTTATCTCAAACGTCAAAGGTCGTAGGTGAGGAGTCCTGCATCACAGATTCATCCTCACTGTTCTGTTGTGTAATACTACTGAAAACTCTTCAGAGCCCAATGACTTACTGACTACTGTCTGACTGACATGTAATTAGAATGATTTATCTAGCAGGTCATAGAGAGACAACCAATAGACACTAAATCATTGGCGTTGTGACCtggaaaacagtttttttatatatatatttaattcattAATATCGTGGCAACTGTTGTCTACATCATGTAAGAGGTGTTAAGTCAAGGTCAAGCTCTCATCTCCAGTCAGTAGCTAGTTTGTCTCAGTACATTTGTGATATTGTTTTCCAGATCATGTCTCTTCTAGGTCCTATAGGTGCATGTGACCCTACCTCTCACAAGAATCGATTCTCATGAGAAGAATTTCATTATATTGCAAAATATTTACGTTTGACCATATTTATTCTGTAATGATATGTAATGATACATTAGAATACTAATAGCCGAGAAGCCATTGTTTGGTTTACTGTTTGATGCTGAAAAGGTATTGCAGATTGTAGTGTGTGTAAGTAACCACCAACTTGAAAGAGGATCTTTGAATGGTGCTTTTATAACTACTGAAATGACCTCTAATCTTGAGAAGGAACATAATAGTGGCATTGGAACTGACATTAGCTGTAGCACAACCTCGACACCCTTTGAATGAATACGTTCGGCCTTCATgcctgtaaatgtaaatgtactaCTTATTACAGCATAATGCCCAAAATGCTTTGCATAAAATATCATGGTCCACTTATTAATGTAGCTGACGACCAAGCTGGAGGGTTGCCAGATATATGCTGAACTACATAAGGAAACCTGCCTGAAGGAACCCTATCATCATTTAGGTGAAATGATGTCACTGTGACCACTATAACTGGGTTTTGGCAACCCTGCCATGCTGGTACTCCGATGTTAAGCTTTAACCAAAGTTTCATAGATGCAGAACATAACTTTTGTCAGATAATGCAGCTAGAAAACCTTTGTCTATCATTCTTGTTTGATAGGCAATTGTACTATGATGAGGTCTGTATCAGAAATGTTAAGAATACTTGATGCACTATGTGCCATACATTTTGTAGAAGGGTAATCCtgtttatttctttttttaaataacagTTAAGATTTGTAACTTATGATATGTGTGTATTTTTTATATTCATACTTGAAGTGTAAACTGTGTCTCGACGACATGGGCATTGAATTGAACAAGGTGCTTGTTTGCTATGTATTATCCAAAGATGTTTTTAAGAATCATATGTACCTACAGTATGAAAATGAACGATTCTGGTGCTATGGgcattcattttaattgtatcAACATCGTAGGTTTTGCTACTATACTAACACTGTATAATAAGCAGTAATTAAATATTGTAATGCTTTTCAATTGA

Function

NR:

description
A disintegrin and metalloproteinase with thrombospondin motifs 20-like

GO: NA

KEGG:

id description
K08624 ADAMTS9; a disintegrin and metalloproteinase with thrombospondin motifs 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970373.1 True 9124 mRNA 0.50 38 22281089 22422282

Neighbor

gene id symbol gene type direction distance location
LOC110508905 twf1 coding upstream 54985 22212332 ~ 22226104 (+)
LOC110508655 LOC100380741 coding upstream 173232 22024629 ~ 22107857 (+)
LOC110508592 LOC106613751 coding upstream 369573 21809564 ~ 21911516 (+)
LOC118946025 LOC106604946 coding upstream 453960 21819189 ~ 21827129 (+)
LOC110508526 bsg coding upstream 478186 21792456 ~ 21802903 (+)
zgc:110339 LOC106573615 coding downstream 10028 22432310 ~ 22435150 (+)
LOC110513869 LOC106560949 coding downstream 198384 22620666 ~ 22623478 (+)
LOC110510174 LOC106573623 coding downstream 291392 22713674 ~ 22869379 (+)
LOC110511054 NA coding downstream 1365211 23787493 ~ 23793379 (+)
LOC110511247 LOC106573632 coding downstream 1382732 23805014 ~ 23822354 (+)
G21545 NA non-coding upstream 13114 22267755 ~ 22267975 (+)
G21533 NA non-coding upstream 31452 22249351 ~ 22249637 (+)
G21528 NA non-coding upstream 37374 22239891 ~ 22243715 (+)
G21299 NA non-coding upstream 228737 22052085 ~ 22052352 (+)
G21229 NA non-coding upstream 317932 21962939 ~ 21963157 (+)
G21653 NA non-coding downstream 45488 22467770 ~ 22468675 (+)
G21650 NA non-coding downstream 51662 22473944 ~ 22474284 (+)
G21656 NA non-coding downstream 54933 22477215 ~ 22487478 (+)
G21744 NA non-coding downstream 153284 22575566 ~ 22576163 (+)
G21748 NA non-coding downstream 154529 22576811 ~ 22577088 (+)
G20773 NA other upstream 712901 21567545 ~ 21568188 (+)
G19400 NA other upstream 1971191 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 2004194 20276590 ~ 20276895 (+)
G19359 NA other upstream 2038214 20242645 ~ 20242875 (+)
G19083 NA other upstream 2365257 19915586 ~ 19915832 (+)
G23109 NA other downstream 1116114 23538396 ~ 23538863 (+)
G23135 NA other downstream 1152310 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 1450739 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 2082373 24504638 ~ 24506125 (+)
G24123 NA other downstream 2128243 24550525 ~ 24552435 (+)

Expression


Co-expression Network