LOC110513869 (LOC106560949)


Basic Information

Item Value
gene id LOC110513869
gene name LOC106560949
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22620666 ~ 22623478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472098.2
tgcaagccaggcctaattgcccgacttcactaatgctcttgtagctgaatggaagcaagtccccacagcaatgtgatgttcgacgagcaggtgtccacatacttttgtcatgTATTGTACATGTATTAGGATCACTGATGTGAAGATCTGTATTGTGGTATATTTAAATCAATGAACAGTTAAAGAATAGAGATGAGCACAATCTAAGGATTACCATACTACCAAGATACTCTCATCAAAGATAATTATTTGAGAATGACTGCCTGGTGGCACATGTTATATGATTCAGAAGCTGACATGTTGTGTTTGTCCCTAAATATTAAGCAAATAAGCCTGAAATGAAAGTCACTGGGAAAGAATGGGTACTGGTCAACCTAAATGTCTCTGGATACTACAGGGTTAGAGCTATGATGAAGCCAACTGGGAAAGTCTCATCAACGTACTGAGCACCATTCCTCAGTTATCAATGGAGCTCAATTGGTGGATGATCCTTTTAACCTTGCAAGGTACAACCAAGTGAATGCCATTAGGATGGCCTGTAGCACTGGAATGACGGAGTGTCAGAATCTGACTAATGGCTGACCCTGTCAACAATCCgtacctggACTACACCCTGGATGCAACCAACATCTGCAAGCAGGATGCCACCTCTACCATTTTTTACATTGCAAGCAATGTTGTTGGCCAGTCTCTGGCCTGGGACTTTATGAGAGACAGATGGGGTTACATCTTAACTCAGTACGGAGGTggttctttctccttctccatctccaaTCTCATCGATGGTGTGACCAAGAGGTTTTCAACTGAATTTGAGTTCTAACAGATGGTATTACAGATTAGGGGATTTGTCAGCACATATTGCTCAACATGTTTGTATTGGGGTACGATGTGGACCCTAAATGTAGAGTTTTCTATATTGCACAATATAAGTTAATGTTTCTCTTCGCTGTCACAGCTCATGCAGTTACAGGCAGACAACTGAGGTTGGCTTCGACTCGGGTATCTTTGCAATTTCACAGGCCATTGAGCGGACAACAGCTAACATCAAATGGGTGGCAGAGAACAAGAACTGTGCAGGCATGGCTTAAAGCAGAGACTGATGCACCATAATGGTCACATGGAGAAACAAACACCTGTCCATTTATTTATTATCTAAGACCAATCCTAAAGCCATGtttcttgttgtttttttgtctctCTAACAGTCAATGACACTTTTTATTCTAAAGTTATCCTGCCCCTTAATCAGAAATACTATGTCGGCCTATACTTCTATTTTTTGGGGAAATAACGTTGTATGAATTAAAACATAATTTTTCTATCAAAGACTAACTTTCTAAAATGCTGCATTGCTATTAAACACTGGTTTATGATTGTGGATTGTGGAAATAATGTGGAA
>XR_005041338.1
tgcaagccaggcctaattgcccgacttcactaatgctcttgtagctgaatggaagcaagtccccacagcaatgtgatgttcgacgagcaggtgtccacatacttttgtcatgTATTGTACATGTATTAGGATCACTGATGTGAAGATCTGTATTGTGGTATATTTAAATCAATGAACAGTTAAAGAATAGAGATGAGCACAATCTAAGGATTACCATACTACCAAGATACTCTCATCAAAGATAATTATTTGAGAATGACTGCCTGGTGGCACATGTTATATGATTCAGAAGCTGACATGTTGTGTTTGTCCCTAAATATTAAGCAAATAAGCCTGAAATGAAAGTCACTGGGAAAGAATGGGTACTGGTCAACCTAAATGTCTCTGGATACTACAGGGTTAGAGCTATGATGAAGCCAACTGGGAAAGTCTCATCAACGTACTGAGCACCATTCCTCAGTTATCAATGGAGCTCAATTGGTGGATGATCCTTTTAACCTTGCAAGGTACAACCAAGTGAATGCCATTAGGATGGCCTGTAGCACTGGAATGACGGAGTGTCAGAATCTGACTAATGGCTGACCCTGTCAACAATCCgtacctggACTACACCCTGGATGCAACCAACATCTGCAAGCAGGATGCCACCTCTACCATTTTTTACATTGCAAGCAATGTTGTTGGCCAGTCTCTGGCCTGGGACTTTATGAGAGACAGATGGGGTTACATCTTAACTCAGTGAGTTTGAGCTTTTATCACATATTGTATTGATTGTTTAATTTCGAAGTGATTCTTTGTCACATTTGGTACACTGATATTTGATCTAACTCTACATTAGATGTTGTTTTCTTACTTGACCTCGTCTGTCATAGGTACGGAGGTggttctttctccttctccatctccaaTCTCATCGATGGTGTGACCAAGAGGTTTTCAACTGAATTTGAGTTCTAACAGATGGTATTACAGATTAGGGGATTTGTCAGCACATATTGCTCAACATGTTTGTATTGGGGTACGATGTGGACCCTAAATGTAGAGTTTTCTATATTGCACAATATAAGTTAATGTTTCTCTTCGCTGTCACAGCTCATGCAGTTACAGGCAGACAACTGAGGTTGGCTTCGACTCGGGTATCTTTGCAATTTCACAGGCCATTGAGCGGACAACAGCTAACATCAAATGGGTGGCAGAGAACAAGAACTGTGCAGGCATGGCTTAAAGCAGAGACTGATGCACCATAATGGTCACATGGAGAAACAAACACCTGTCCATTTATTTATTATCTAAGACCAATCCTAAAGCCATGtttcttgttgtttttttgtctctCTAACAGTCAATGACACTTTTTATTCTAAAGTTATCCTGCCCCTTAATCAGAAATACTATGTCGGCCTATACTTCTATTTTTTGGGGAAATAACGTTGTATGAATTAAAACATAATTTTTCTATCAAAGACTAACTTTCTAAAATGCTGCATTGCTATTAAACACTGGTTTATGATTGTGGATTGTGGAAATAATGTGGAA
>XR_005041342.1
tgcaagccaggcctaattgcccgacttcactaatgctcttgtagctgaatggaagcaagtccccacagcaatgtgatgttcgacgagcaggtgtccacatacttttgtcatgTATTGTACATGTATTAGGATCACTGATGTGAAGATCTGTATTGTGGTATATTTAAATCAATGAACAGTTAAAGAATAGAGATGAGCACAATCTAAGGATTACCATACTACCAAGATACTCTCATCAAAGATAATTATTTGAGAATGACTGCCTGGTGGCACATGTTATATGATTCAGAAGCTGACATGTTGTGTTTGTCCCTAAATATTAAGCAAATAAGCCTGAAATGAAAGTCACTGGGAAAGAATGGGTACTGGTCAACCTAAATGTCTCTGGATACTACAGGGTTAGAGCTATGATGAAGCCAACTGGGAAAGTCTCATCAACGTACTGAGCACCATTCCTCAGTTATCAATGGAGCTCAATTGGTGGATGATCCTTTTAACCTTGCAAGGAGTGAAGCCTATGGGGATATGCAGGCTTACCTCAAAAACAAGTAGAACCACTTTACATACTATAAGGGTATCACTGACAACTGGAAAACAGTACCCACTGGGCATATGGACCAGTACAACCAAGTGAATGCCATTAGGATGGCCTGTAGCACTGGAATGACGGAGTGTCAGAATCTGACTAATGGCTGACCCTGTCAACAATCCgtacctggACTACACCCTGGATGCAACCAACATCTGCAAGCAGGATGCCACCTCTACCATTTTTTACATTGCAAGCAATGTTGTTGGCCAGTCTCTGGCCTGGGACTTTATGAGAGACAGATGGGGTTACATCTTAACTCAGTGAGTTTGAGCTTTTATCACATATTGTATTGATTGTTTAATTTCGAAGTGATTCTTTGTCACATTTGGTACACTGATATTTGATCTAACTCTACATTAGATGTTGTTTTCTTACTTGACCTCGTCTGTCATAGGTACGGAGGTggttctttctccttctccatctccaaTCTCATCGATGGTGTGACCAAGAGGTTTTCAACTGAATTTGAGTTCTAACAGATGGTATTACAGATTAGGGGATTTGTCAGCACATATTGCTCAACATGTTTGTATTGGGGTACGATGTGGACCCTAAATGTAGAGTTTTCTATATTGCACAATATAAGTTAATGTTTCTCTTCGCTGTCACAGCTCATGCAGTTACAGGCAGACAACTGAGGTTGGCTTCGACTCGGGTATCTTTGCAATTTCACAGGCCATTGAGCGGACAACAGCTAACATCAAATGGGTGGCAGAGAACAAGAACTGTGCAGGCATGGCTTAAAGCAGAGACTGATGCACCATAATGGTCACATGGAGAAACAAACACCTGTCCATTTATTTATTATCTAAGACCAATCCTAAAGCCATGtttcttgttgtttttttgtctctCTAACAGTCAATGACACTTTTTATTCTAAAGTTATCCTGCCCCTTAATCAGAAATACTATGTCGGCCTATACTTCTATTTTTTGGGGAAATAACGTTGTATGAATTAAAACATAATTTTTCTATCAAAGACTAACTTTCTAAAATGCTGCATTGCTATTAAACACTGGTTTATGATTGTGGATTGTGGAAATAATGTGGAA
>TU25292
GCAGAGTGGGAATTTGGTTGGGAGCAGTTTGAGGCTGCCAGCATCGCTAATCAGGCAGACAAGCTTTGATCTGCCCTGACCTGTACAAAGCAGCCCTGGCTACTCAACAAATGAGTTAAGAGTGCTACGTATCCATGGCTTATTGGTCAAATGTGATCTGTGATTATCCCTCCCCTAGGCATCAGAGTATTCAATAAACAGCAAAGCATTGATTCTCTGCCTGGCATAAAAAGGAGACATTTTCAAGGAGTGCTTTAAAGAGACTTGTGTGTCTGACATGAATATGAGGTGCTTCAATGCCTCATACTGTCTTTGTACCTCCTTtcaccattgaggtacctggACTACACCCTGGATGCAACCAACATCTGCAAGCAGGATGCCACCTCTACCATTTTTTACATTGCAAGCAATGTTGTTGGCCAGTCTCTGGCCTGGGACTTTATGAGAGACAGATGGGGTTACATCTTAACTCAGTACGGAGGTggttctttctccttctccatctccaaTCTCATCGATGGTGTGACCAAGAGGTTTTCAACTGAATTTGAGTTCTAACAGATGCTCATGCAGTTACAGGCAGACAACTGAGGTTGGCTTCGACTCGGGTATCTTTGCAATTTCACAGGCCATTGAGCGGACAACAGCTAACATCAAATGGGTGGCAGAGAACAAGAACTGTGCAGGCATGGCTTAAAGCAGAGACTGATGCACCATAATGGTCACATGGAGAAACAAACACCTGTCCATTTATTTATTATCTAAGACCAATCCTAAAGCCATGtttcttgttgtttttttgtctctCTAACAGTCAATGACACTTTTTATTCTAAAGTTATCCTGCCCCTTAATCAGAAATACTATGTCGGCCTATACTTCTATTTTTTGGGGAAATAACGTTGTATGAATTAAAACATAATTTTTCTATCAAAGACTAACTTTCTAAAATGCTGCATTGCTATTAAACACTGGTTTATGATTGTGGATTGTGGAAATAATGTGGAATAATGTGGAAATAATAAATACAACTGTTTTACAATG

Function

NR:

description
PREDICTED: aminopeptidase N-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472098.2 False 1402 mRNA 0.41 5 22620666 22623442
XR_005041338.1 False 1536 mRNA 0.40 4 22620666 22623442
XR_005041342.1 False 1650 mRNA 0.40 6 22620666 22623442
TU25292 True 1047 lncRNA 0.53 3 22622169 22623478

Neighbor

gene id symbol gene type direction distance location
zgc:110339 LOC106573615 coding upstream 185516 22432310 ~ 22435150 (+)
LOC110532091 LOC106573613 coding upstream 198384 22281089 ~ 22422282 (+)
LOC110508905 twf1 coding upstream 394562 22212332 ~ 22226104 (+)
LOC110508655 LOC100380741 coding upstream 512809 22024629 ~ 22107857 (+)
LOC110508592 LOC106613751 coding upstream 709150 21809564 ~ 21911516 (+)
LOC110510174 LOC106573623 coding downstream 90232 22713674 ~ 22869379 (+)
LOC110511054 NA coding downstream 1164051 23787493 ~ 23793379 (+)
LOC110511247 LOC106573632 coding downstream 1181572 23805014 ~ 23822354 (+)
LOC110511358 LOC106573633 coding downstream 1249472 23872914 ~ 23905175 (+)
LOC110512398 LOC106573641 coding downstream 1462227 24085669 ~ 24091336 (+)
G21745 NA non-coding upstream 34746 22583659 ~ 22585920 (+)
G21748 NA non-coding upstream 43578 22576811 ~ 22577088 (+)
G21744 NA non-coding upstream 44503 22575566 ~ 22576163 (+)
G21656 NA non-coding upstream 133188 22477215 ~ 22487478 (+)
G21650 NA non-coding upstream 146382 22473944 ~ 22474284 (+)
G21782 NA non-coding downstream 6277 22629719 ~ 22630011 (+)
G21783 NA non-coding downstream 6707 22630149 ~ 22630403 (+)
G21785 NA non-coding downstream 9696 22633138 ~ 22633346 (+)
G22180 NA non-coding downstream 89017 22712459 ~ 22712740 (+)
G22400 NA non-coding downstream 292862 22916304 ~ 22917005 (+)
G20773 NA other upstream 1052478 21567545 ~ 21568188 (+)
G19400 NA other upstream 2310768 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 2343771 20276590 ~ 20276895 (+)
G19359 NA other upstream 2377791 20242645 ~ 20242875 (+)
G19083 NA other upstream 2704834 19915586 ~ 19915832 (+)
G23109 NA other downstream 914954 23538396 ~ 23538863 (+)
G23135 NA other downstream 951150 23574592 ~ 23574995 (+)
ccl4 ccl4 other downstream 1881213 24504638 ~ 24506125 (+)
G24123 NA other downstream 1927083 24550525 ~ 24552435 (+)
LOC118946025 LOC106604946 coding upstream 795040 21819189 ~ 21827129 (+)

Expression


Co-expression Network