LOC110532107 (LOC106573785)


Basic Information

Item Value
gene id LOC110532107
gene name LOC106573785
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22640169 ~ 22649593 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615727.2
AGCTCTGGGAGGCCATGGAGATGGTCTGAGAGGGTCTGTGGAGGTGTCACTTCACACCTCAGACTCCTGCATAAAACCAAGGCTCTCTGAATGACCAGCCCACAGGCCAAGCTCTTCAGTTCAGTCCTACTGTTCAACATACAGGACACAGCATGGATATCTCTGCTCCTCTACTCAGCAACTATGGTGTTGGTGTGCAGTACCACTGGAGTTATCCCAGTTCAGACTCTGAGTTCTATAACCTCTCTTCTCCAGAGACCTGTATCATCTCACCGACCTCCTGCATGGACTTCTCCCTCTCCTGGCTACCTCGGGGGACCGCCACAGGACCTCACAGACCAACATACTCTGGGGGAGCCAAGGCATCCGCTTCCCCGTCCTCCAGCGATGAAGGAAGACTCTCTGGAGGGAGGATTAGAAAGAACTGCTCCAAGAACCCCAGCAAGCAGAGACAGAGTGCCAGCGAGAAAGAGAAGCTGAGGATGAGAGACCTGACCAAAGCCCTCCACCACCTCAGGACCTACCTGCCCCCCTCTGTGGCTCCTCCTGAACAGACTCTGACCAAGATCGAGACGCTGCGCCTCACCATCAGCTACATCTCCCACCTGTCTGCCCAGCTGGGACTCAGCGAGGAGGCTCTGTGCCAGAGGAAGGAGCTGAACCTCAACACATCAGGACACCACATATCACCTCAACAAGAGGTGTGCCAGTTCAGCCCCTCCTCATTGGGGAACtgttggagagaggaggcagagatagGGAGATGTGCAGGGCAGCACCAGACCCTCCACCACACAGCCACGTCCACGTACCCACTCCACAATACGACTGGGATGGAGAGACACCCGATCAGCAGTAACGACAACGTTATCAACTCAAGTATGGattctctgttggaatcgccGGTGTATGCAGAGACTGCACAGTCAAGTCAGGAAGATGTGTTTCCCAGGGACCCCCTGCCTCTAGTGTGA
>TU25686
GCGCCTCACCATCAGCTACATCTCCCACCTGTCTGCCCAGCTGGGACTCAGCGAGGAGGCTCTGTGCCAGAGGAAGGAGCTGAACCTCAACACATCAGGACACCACATATCACCTCAACAAGAGGTGTGCCAGTTCAGCCCCTCCTCATTGGGGAACtgttggagagaggaggcagagatagGGAGATGTGCAGGGCAGCACCAGACCCTCCACCACACAGCCACGTCCACGTACC

Function

NR:

description
mesogenin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615727.2 False 974 mRNA 0.55 2 22640169 22649593
TU25686 True 236 lncRNA 0.34 1 22648781 22649016

Neighbor

gene id symbol gene type direction distance location
LOC110532100 LOC106573785 coding downstream 177 22639234 ~ 22639992 (-)
LOC110509695 LOC106573621 coding downstream 47524 22580312 ~ 22592645 (-)
LOC110509621 LOC106573620 coding downstream 65231 22492560 ~ 22574938 (-)
LOC110509312 NA coding downstream 152619 22463395 ~ 22487550 (-)
LOC110509244 LOC106573616 coding downstream 202574 22434675 ~ 22437595 (-)
LOC110510003 LOC106573622 coding upstream 5924 22655517 ~ 22696514 (-)
LOC110510264 LOC106560960 coding upstream 265777 22915370 ~ 22956393 (-)
LOC110510575 LOC106573628 coding upstream 671478 23321071 ~ 23619775 (-)
LOC110510928 det1 coding upstream 1119700 23769293 ~ 23774865 (-)
LOC110511130 LOC106573631 coding upstream 1172063 23821656 ~ 23861029 (-)
G22127 NA non-coding downstream 3606 22636327 ~ 22636563 (-)
G22116 NA non-coding downstream 18844 22621125 ~ 22621325 (-)
G22114 NA non-coding downstream 22326 22617535 ~ 22617843 (-)
G22099 NA non-coding downstream 45142 22594783 ~ 22595027 (-)
G22053 NA non-coding downstream 60513 22576822 ~ 22579656 (-)
G22181 NA non-coding upstream 62940 22712533 ~ 22712738 (-)
G22590 NA non-coding upstream 396966 23046559 ~ 23046779 (-)
G22593 NA non-coding upstream 398910 23048503 ~ 23048740 (-)
G22693 NA non-coding upstream 480948 23130541 ~ 23130774 (-)
G22901 LOC100136012 non-coding upstream 631710 23281303 ~ 23281631 (-)
G21993 NA other downstream 257961 22381870 ~ 22382208 (-)
LOC110507736 LOC106573601 other downstream 1092396 21535882 ~ 21565723 (-)
LOC118945319 NA other downstream 1550919 21085298 ~ 21089250 (-)
G20266 NA other downstream 1840161 20799120 ~ 20800008 (-)
LOC110502937 ccl25 other downstream 3007552 19630376 ~ 19633058 (-)
G22350 LOC106573623 other upstream 190252 22839845 ~ 22843305 (-)
G23394 NA other upstream 974433 23624026 ~ 23624349 (-)
G24542 NA other upstream 1573314 24222907 ~ 24226490 (-)
LOC110514811 ccl8 other upstream 1902998 24552392 ~ 24554074 (-)
G22133 NA non-coding downstream 3103 22645454 ~ 22645678 (-)

Expression


Co-expression Network