LOC110510928 (det1)


Basic Information

Item Value
gene id LOC110510928
gene name det1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 23769293 ~ 23774865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592107.2
CTTTTCAACCTGAGTTTACGGTGGCGCTGTGGGGAATGGTTCCACGGAAGAGGATGCGTCTTTGCTGACGGctctattagctagctaactaatacCAACAACATTGAACAGTGTTGAGAAATCACGACTCACTTATGTCGTATGTGCAGAACAAATGTTCCAAGCTTGTCATACATTCGTTTTTTTATTGCCTGCCCTCAAGACGCTAGCCTCAAGCCTTTGCTATACAGAGAGATTTGTGATGTAGCAACCAGTAAGTGGGAGCTGGCAACAATCGAACCATGGAAGATGATTCCCCAACCCTGAAACCCAGGCGCATCCAGAACCAGAATGTAGTCCATCGACTGGAGCGGCGGCGGATCTTCTCTGGACGGGCTGGAGCCCACTGGTACCGCGTGCGCTGCTTCCACCAGAACCTTTTCCCCAACTTCACTGTGGTCAACGTAGAGAAGCCTCCCTGCTTCCTCCGCAAGTTCTCCCCAGATGGACGCTGCTTCATAGCCTTCTCCTCTGACCAGACCTCCCTGGAGATCTATGAGTACCAGGGCTGCCAGGCGGCTGAGGATCTGCTGCTGGGGCAGGATGGGGAGACCCTGGCCAATGGCAATGACCAACGCTCCCTCAACATCCGCGGCCGCCTCTTTGAACGCTTTTTTTCATTACTGCACGTCACTAATGTGGCCTCCAATGGAGAGCACCTGAACCGAGAGTGCAGCCTATTCACTGATGACTGTCGCTATGTAATCGTGGGCTCAGCGGTCTATGTGCCCGAGGAGCCCTCTCCACACTTCTTTGAGGTGTACCGCAACAATGAGTCTGTGACTCCCAACCCCCGCTCTCCGCTGGAGGACTACTCATTGCACATCATTGACCTGCACACTGGCAGGCTCTGTGACACCAGGTCCTTCAAGTGTGACAAGATCATCCTTTCGCATAACCAGGGACTCTACCTCTACCGTAACATACTGGCTGTTCTTTCTGTTCAGCAGCAGACAATCCATGTCTTTCAGGTGACATCAGAGGGGACGTTCCTGGACGTGCGAACCATTGGTCGGTTCTGCTACGAAGACGACCTCCTCACTCTGTCTGCGGTGTATACTGAGGCCCGGGCCGAGGGCCAGCCAGGCTTCTCCCGCCTCTACAAGGAGAAGACCATCAACTCCCTGAAGCACAGACTACTGGTCTACCTGTGGAGACGGGCTGAGCAGGACGGCAGCGCCACCGCCAAGCGACGCTTCTTCCAGTTCTTTGACCAGCTGAGACAGCTGAGGATGTGGAAGATGCAGCTACTAGATGAGCACCACCTCTTCATCAAATATACCAGTGAGGACGTGGTCACCCTGCGAGTCACTGACCCCTCTCAGCCCTCGTTCTTTGTAGTGTACAACATGGTGAGCACAGAGGTGATGGCAGTCTTTGAGAACACCTCTGACAAACTGCTGGAGCTGTTTGAGAACTTCTGTGACCTGTTCCGGAACGCCACGCTCCACAGTGAAGCTGTTCAGTTCCCCTGCTCTGCCTCCAGCAACAACTTTGCACGGCAGGTCCAGAGAAGGTTCAAAGACACCATAGTGAATGCAAAGTATGGCGGTCACACTGAGGCTGTGAGGAGGCTGCTGGGACAGCTGCCCATTAGTGCTCAGTCCTACAGCAGCAGCCCCTACCTCGATCTTTCTCTCTTCAGCTACGACGACAAGTGGGTGTCTGTGATGGAACGGCCCAAAACATGTGGAGACCACCCCATCAGGTTTTACGCTCGGGACTCTGGCTTGCTGAAGTTCAAGATCCAGGCAGGCCTCCTGGGCCGGCCCATTAACCATGCCGTCCGGCGGCTGGTGGCCTTCACATTCCACCCCTTTGAGCCGTTCGCCATCTCAGTACAGAGGACCAACGCTGAGTATGTGGTGAATTTCCACATGCGTCATGTCTGTGTATGAGAGGAAAGCAGTGGACTAGACCTGGAGAACTTGGCATTGTACTGTGTAGAGCAAAAAGCAGTCACTCTGCCTTTTTTCTCCCCCTAGTGTGAGGAACAAAATAAGACTGGACTGTGGGCAGAACCACTTGAAGTTGAAATTGGGAGCttggggatgggggatggattccTTGCAGGGACCAAAGATGTTTTTGGCTGGCtctcaaaatgtacttttttggTCACATTTTATtctatgtatttttatttaacctttttacatttgttttatatTTCAATAAAATGATTTAAATATTGA

Function

symbol description
det1 Predicted to enable ubiquitin ligase-substrate adaptor activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be part of cullin-RING ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human DET1 (DET1 partner of COP1 E3 ubiquitin ligase).

NR:

description
DET1 homolog

GO: NA

KEGG:

id description
K10571 DET1; de-etiolated-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592107.2 True 2234 mRNA 0.52 6 23769293 23774865

Neighbor

gene id symbol gene type direction distance location
LOC110510575 LOC106573628 coding downstream 149518 23321071 ~ 23619775 (-)
LOC110510264 LOC106560960 coding downstream 812900 22915370 ~ 22956393 (-)
LOC110510003 LOC106573622 coding downstream 1072779 22655517 ~ 22696514 (-)
LOC110532107 LOC106573785 coding downstream 1119700 22640169 ~ 22649593 (-)
LOC110532100 LOC106573785 coding downstream 1129301 22639234 ~ 22639992 (-)
LOC110511130 LOC106573631 coding upstream 46791 23821656 ~ 23861029 (-)
LOC110511707 LOC106573634 coding upstream 167030 23941895 ~ 23945943 (-)
LOC110511826 LOC106573635 coding upstream 206350 23981215 ~ 24015777 (-)
LOC110512077 LOC106573636 coding upstream 259360 24034225 ~ 24049433 (-)
uba2 sae2 coding upstream 275444 24050309 ~ 24072410 (-)
G23765 NA non-coding downstream 132 23768999 ~ 23769161 (-)
G23742 NA non-coding downstream 27784 23741280 ~ 23741509 (-)
G23522 NA non-coding downstream 48481 23720608 ~ 23720812 (-)
G23518 NA non-coding downstream 50455 23718520 ~ 23718838 (-)
G23501 NA non-coding downstream 63309 23705784 ~ 23705984 (-)
G23768 NA non-coding upstream 1929 23776794 ~ 23777254 (-)
G23784 NA non-coding upstream 29434 23804299 ~ 23804502 (-)
G23785 NA non-coding upstream 32038 23806903 ~ 23808061 (-)
G23794 NA non-coding upstream 54807 23829672 ~ 23829900 (-)
G23796 NA non-coding upstream 56277 23831142 ~ 23831345 (-)
G23394 NA other downstream 144944 23624026 ~ 23624349 (-)
G22350 LOC106573623 other downstream 925988 22839845 ~ 22843305 (-)
G21993 NA other downstream 1387085 22381870 ~ 22382208 (-)
LOC110507736 LOC106573601 other downstream 2221520 21535882 ~ 21565723 (-)
LOC118945319 NA other downstream 2680043 21085298 ~ 21089250 (-)
G24542 NA other upstream 448042 24222907 ~ 24226490 (-)
LOC110514811 ccl8 other upstream 777726 24552392 ~ 24554074 (-)
znf276 znf276 other upstream 1089222 24853824 ~ 24865158 (-)
LOC118956210 NA other upstream 1153483 24910984 ~ 24938701 (-)

Expression


Co-expression Network