LOC110511247 (LOC106573632)


Basic Information

Item Value
gene id LOC110511247
gene name LOC106573632
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 23805014 ~ 23822354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592266.2
tttcaatgaCGTCAAGTATCAGCTGACTGGTTTGTTTTGCTGTAGACTCCGCAGCAGATAGCAAGGAAGGAGTCGAACGACATCAAAGGAGTAAAATAATTTGTTATTCTTACAAAAAATTGGTCTTGGATCGCCCAACAGTTTAAATCATCTACGGTTGAAAATATATGTACCATTCTTACAGGCATCTTTTGCCTCATTTACGAAACAGTTTGACCTGCGTGAAATATGCCTTCAGAGAAGACATTCAAACAAAGGAGGACATTTGAGCAGAGAGTAGATGATGTACGACTGATCCGAGAGCAGCACCCCAACAAGATTCCGGTCATCATTGAGAGATACAAGGGAGAGAAGCAGCTGCCCATCCTGGATAAAACCAAGTTCCTGGTTCCTGACCATGTCAACATGAGTGAACTGATCAAAATCATCAGGAGGCGCCTCCAGCTGAACTCCAACCAGGCCTTTTTCCTGCTGGTGAACGGCCACAGCATGGTGTCCGTGTCGGCAGCCATCGCTGAGGTATACGAGCGCGAGAAGGATGACGATGGCTTCCTCTACATGGTGTACGCCTCGCAGGAGACCTTCGGAACCATGGCCCCCCAGTAACAGCCTCCCACCACCACGCCAGCACTCGGGACATTGATACTATCtaccacccccccacccacctgaTCCTTCGTTCCTAAATACAGACCTATCCCCCTGTCTTCCCTCCAACCCATGCTTGCTTTACAACCTTAGCCAAGACCATAGGAACCAGCCAACCTCTTCTCCCATGCGCTAAAGGGCCCCTTATAGTTATTAAAAGCCCTATCCTGCACCTTCTCATACTCTGCCCCTTACCCATACATTCAGCCATGTGTTTAGGGAAAGGGATTAAATAGTTTGTTTGGGTTTTGTTGTATAGGATGGATTAGTATAGCAGAGATGATTGCCAGTTCAGCTTGAGTTCGCTCGCACAAGTTTCAAACGTTACATGTTAAATCCCTGCTTGAGTCCATCACGGTTGAGTTCAGATACAGCAAACCCCATCTTTTCTTTTCCACTGGTTGGGTTTGCTAAACTTGAATGAGCTCAGTCTTTTGGATGAAGCTTCAATCACAACAGCTGCTGAGGAATTTTGTAACAGTTTAGTTGAATCCAGTTTGACTGACATGGGACATTACTGCCACAACATGTGTCATCATGTGGTAAAGTCTCCTGTGATGGGTGACTTAGGCCAATAGTCTTAACCGCTGTGACAAAATTACTGTTTCTATTTCCTTTTTAGTCTTTACTTTGGCCAATTCTAggcaaactatagtttttaagGCTTACATGTTAATGTGTGTTCAGTTTAGCATTCACCTCCCCCTGTCTTTATAATGGTTATGGGTTCAGCGATAAGTACAATTCTCTCCTTAATGAAAACGAAGGTCCTTtttcaaatatgtttttatttcccTGCCTTTGTCGTAAATGTCTCCACATAGAAGAGATGTGAGGGactcttgtttaaaaaaaaagaagttttttttaaaatgcTATGCTACCGAAAATCTGCTTTGATGATTGTAATAAGAGATTTGCCTCTGTGTGTGTACAGATATTGGACAAATGAAAGGAATAATAAACTGACCTTGATCACTATGATAGGACATGATGATGGAATTGCACGTGTGTTGAAAGGGTCACTGATGTGGGGTTGGTGGCCAGTTAGGACTGGGCGGGCATCATGGGCTGGGTCTGTCCATCTCTCCCCCACCTAGACCTGCCCTAGGGCTCCGGACAGAGCTCATCTCTGGGTGGCATCACACTTTTAGAATATTCAATTTGTTTAATAGAGGGTTATTTACGCCTTTATAATGTGTGATGACTTGTGTCCTCTTCCCTTTTGCTGTCCTCAACTGTTTAAAATGTTAGATGCCTTTTTATGTCAGCATTTTTGGCAGTTCCATCTTTATTTTGTTTTCATTCAATGTGATTTTGCTTCGCTGTACAAATGTCCATATGCTATACTTGTGCATAATGAATAAGAATGATTCTATGATCAGTTTGATTGAGGGTTTAATAACAGAGGAATGGTACAGTTATCAACCCAATGTTCCTCTGCATTCTCCTGTGTTTGCCACTCATTCTTCATATTTACAGCAGTATTACAACCTTTTCTTGTATTTATGTTCATATtttatgaataaaaaaaaaatgtaaacgtt

Function

NR:

description
PREDICTED: microtubule-associated proteins 1A/1B light chain 3B

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0005829 cytosol cellular_component

KEGG:

id description
K10435 MAP1LC; microtubule-associated protein 1 light chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592266.2 True 2195 mRNA 0.42 4 23805014 23822354

Neighbor

gene id symbol gene type direction distance location
LOC110511054 NA coding upstream 13455 23787493 ~ 23793379 (+)
LOC110510174 LOC106573623 coding upstream 935635 22713674 ~ 22869379 (+)
LOC110513869 LOC106560949 coding upstream 1181572 22620666 ~ 22623478 (+)
zgc:110339 LOC106573615 coding upstream 1369864 22432310 ~ 22435150 (+)
LOC110532091 LOC106573613 coding upstream 1382732 22281089 ~ 22422282 (+)
LOC110511358 LOC106573633 coding downstream 50560 23872914 ~ 23905175 (+)
LOC110512398 LOC106573641 coding downstream 263315 24085669 ~ 24091336 (+)
LOC110512529 LOC106573640 coding downstream 282992 24105346 ~ 24114557 (+)
LOC110513011 LOC106573643 coding downstream 305547 24127901 ~ 24151730 (+)
LOC110513138 fa2h coding downstream 349801 24172155 ~ 24207840 (+)
G23580 NA non-coding upstream 4604 23799950 ~ 23800410 (+)
G23568 NA non-coding upstream 23173 23781559 ~ 23781841 (+)
G23565 NA non-coding upstream 27459 23777297 ~ 23777555 (+)
G23564 NA non-coding upstream 28036 23776764 ~ 23776978 (+)
G23592 NA non-coding downstream 6040 23828394 ~ 23828945 (+)
G23594 NA non-coding downstream 7429 23829783 ~ 23830014 (+)
G23597 LOC106573631 non-coding downstream 9602 23831956 ~ 23832268 (+)
G23599 NA non-coding downstream 13806 23836160 ~ 23836387 (+)
G23602 NA non-coding downstream 17913 23840267 ~ 23840488 (+)
G23135 NA other upstream 230019 23574592 ~ 23574995 (+)
G23109 NA other upstream 266151 23538396 ~ 23538863 (+)
G20773 NA other upstream 2236826 21567545 ~ 21568188 (+)
G19400 NA other upstream 3495116 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 3528119 20276590 ~ 20276895 (+)
ccl4 ccl4 other downstream 682301 24504638 ~ 24506125 (+)
G24123 NA other downstream 728171 24550525 ~ 24552435 (+)
G24295 NA other downstream 1017631 24839985 ~ 24840462 (+)
G24307 NA other downstream 1034590 24856944 ~ 24857251 (+)

Expression


Co-expression Network