LOC110511707 (LOC106573634)


Basic Information

Item Value
gene id LOC110511707
gene name LOC106573634
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 23941895 ~ 23945943 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592530.2
atttctaaaaatccgTGACCCGGAAGGGATCTGACAAGACGCCAGTTGGCTTCACGCGGATGACAGTATCAGCAAGTTAGCAAAAATATGCTACCTAAGATAAATGTAGCTGCGACTTGTAGTTTTTATTCTAACGTTACCTGAATTAGTCGACGGTCAAGATGACTACAATTTACAATATGTTCCAGTCAGAAACAACATCGATTATGGCCTTCGTCGTCGAGATGGCAATGACAGAAATATACAAAATTTTGCCAAACTCTGACGCTAACAACGACGTTAATccggggagagagCTCTGCACCATTATGAATTTGTTGATGGGGGAGGGTATTCGTAAAGTCTGCCAACTATTCCTTGTGGCCTCCTCACGTTTTCAAAATGAAAACGAGAAACTGAAGACCAAGGTGGAGCAGATGGATGAATATATGAAGGAAATTACTGAGAAGGCTGAACATTATAGAACGTCTCTAGCTAAAGTGGAGGCTGAACCGAAAGTACAGACGCCAACCCATGTTCTGCACAACGGAATGATCTTTGCAATAAAACCAGTTGATCTCCCATTGTTGCCTGGAATGACAGCGGCTTCAGCATTTCCAGGGAATGTCAGTCAAGCAAACACAGTCACTAACGCAACATCCGTCTGTGCAGGTCCTGCCAAAGTTTGCAGTAAACCTACAGAGACGACTTCATTGGAGTATGACTCCTCTCTGGGAGACACACATGGACTGAATACAGAGCCCTCACCAAGAGATACTGAATCCAACATTGAGCATATGAGAGCTGCTCTTCCAGAGGGCACTGACAACGGTAGAGACAGCCATGAAAGACATAAAAACAGTAATATTACTAATGGGACAGGATCCACAGAAAACAAACGCTTCAAGTGTGATGTTTGTGAGAAGACATTCAGCAAGAAAGAGTTGCTCAGAGTTCACAAGCTAATCCACACAAAACCTTTCAAGTGTGACATTTGTGAGAAGACCTTCAGCAGGAAAGGGTTACTGGAAGGTCATAAGCTAATTCACACAAGACCCTTCACCTGTGATGTTTGTGACAAGACCTTCAGCCTGAACCGCATGCTGTTACGTCACAAActaattcacacaggagagaggccaTTTGCTTGTGGTCAATGTGGCAAAACATTCAGAATGTCCAAGCAGCTCGAACGTCACATGTTGCATCACAAAGAAAACAATTTCAGTTGCAAAGTCTGTGGAAATACATTCTCTACCAAGACAGATCTGACACAACATCGGCTAGTTCATGCAGTGGAGAGACCGTTTAAGTGCCTGACTTGTGGAAAGGGTTTCACAAAAAGGACCATACTTATGGGGCACGAGAGAATCCACACCGGTGAAAAACCATACAGCTGTGCTGAATGTGGGAAGAGTTACAGACAGTCTTATGACCTAAGAATTCATATGCGAAGACATACAGGTGCAGACATACGTCCACACTTATGCTCAGAGTGTGGTAAGAGCTTTAGGACAAAATCCGTCCTCGAAAAGCACAAGCGAattcatacaggggagaagccatttAAATGTGAGACCTGTGGAGCTGCTTTTGGCCATAAAGGAAACCTTGTGAGACACCAAGTGCTTCACACGGGGGAGAGACCATACAAATGTAAAGTGTGTGGGAAAAGCTACCCTCAGTCCACTGACTTAAAAGCTCACATGCACCGTCATGGGGCAACCAAACCTTTTATGTGTGATCTATGTGGAAAGACTTTTATTTACAATTACCAAATGAGACAACATAATCTACAATGGCACATGGCTGAAGGAGATAAGGTTCCTGGGAGAGAGGGAACATCAACAAAGCCATTCAGTTGCAAAATATGTTTGAACGGCTTCAGCTCCATGCTAACTCTGAAAAAGCATAaagaaattcacacaggacaaaaGCAATATTCTTGTTCCATTTGTGGAAAGACCATTGCATATAAAAATGCTTTTGACTATCACATGAGAGTTCACAGTGGAGTGAAGCCCCATGAATGTAAATACTGTGGAAGGAAATTTATTCTGAAACAAGCTCTTCAAGGACATGAGCGGACCCATACAGGTGAAAAACCCTTCAAATGCAGTTATTGTGACAAGACTTTCGCAGTCAACACCAATCTGAAAAGGCATGAgcgaatccacacaggagagaagccattcAAATGTGATGTTTGCGGGAGAGGTTTCAGCCAAGCCAACAATGTTAAAGCCCACATGCAAGTCCACACTGGAGTTAGGCCTTACTATTGCAAGAGATGTGGAAAAGGCTTTTCTGACATAAGACACTACAAAAACCATAGCTGTGATGGTGTGGCTGTTACACGCACACACTGTGATGGTGATAATTATCGTAAATCTTCTGACGGCACTTTCAGAAGTAGAAAAGGAGACAGGAGTGTTTGCTATAATGCTGCTGTTGTGTAGACTCCGTGATATTATCTCAATATTATCTACAGACTGTAGACTAAAGTGGTGCAACTTCCTGCTTACAGATGTCATGAACAATGGGGATTTATTCAGTAGTGTGAAATGTTCTCGGGTGAGTGTCTGGAAAGCCTTGTATGAGATGAGAGCGTGCTTTAGGAAATTAGATATGTGCTTGCTGTAGTGCTTGGAGATCTTGCTATAAATCAAAGGGTTAATGTTCATGAGCCCAAATTCTCATTTGTTCATATTGTGTAAATCAATAAACACATCATTCATGTGAAGCTATAAACTGA

Function

NR:

description
zinc finger protein 708-like

GO: NA

KEGG:

id description
K09191 GTF3A; general transcription factor IIIA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592530.2 True 2734 mRNA 0.43 4 23941895 23945943

Neighbor

gene id symbol gene type direction distance location
LOC110511130 LOC106573631 coding downstream 80866 23821656 ~ 23861029 (-)
LOC110510928 det1 coding downstream 167030 23769293 ~ 23774865 (-)
LOC110510575 LOC106573628 coding downstream 322120 23321071 ~ 23619775 (-)
LOC110510264 LOC106560960 coding downstream 985502 22915370 ~ 22956393 (-)
LOC110510003 LOC106573622 coding downstream 1245381 22655517 ~ 22696514 (-)
LOC110511826 LOC106573635 coding upstream 35272 23981215 ~ 24015777 (-)
LOC110512077 LOC106573636 coding upstream 88282 24034225 ~ 24049433 (-)
uba2 sae2 coding upstream 104366 24050309 ~ 24072410 (-)
LOC118948024 NA coding upstream 145661 24091604 ~ 24102924 (-)
ccdc113 ccdc113 coding upstream 173281 24119224 ~ 24126628 (-)
G23839 NA non-coding downstream 26537 23915118 ~ 23915358 (-)
G23838 NA non-coding downstream 28788 23912882 ~ 23913107 (-)
G23833 NA non-coding downstream 32658 23908912 ~ 23909237 (-)
G23832 NA non-coding downstream 33334 23908257 ~ 23908561 (-)
G23831 NA non-coding downstream 34779 23906897 ~ 23907116 (-)
G23932 NA non-coding upstream 129458 24075401 ~ 24075685 (-)
G23940 NA non-coding upstream 136149 24082092 ~ 24082376 (-)
G24514 NA non-coding upstream 150633 24096576 ~ 24096892 (-)
G24515 NA non-coding upstream 157605 24103548 ~ 24104450 (-)
G23394 NA other downstream 317546 23624026 ~ 23624349 (-)
G22350 LOC106573623 other downstream 1098590 22839845 ~ 22843305 (-)
G21993 NA other downstream 1559687 22381870 ~ 22382208 (-)
LOC110507736 LOC106573601 other downstream 2394122 21535882 ~ 21565723 (-)
G24542 NA other upstream 276964 24222907 ~ 24226490 (-)
LOC110514811 ccl8 other upstream 606648 24552392 ~ 24554074 (-)
znf276 znf276 other upstream 918144 24853824 ~ 24865158 (-)
LOC118956210 NA other upstream 982405 24910984 ~ 24938701 (-)
LOC110518671 klhl36 other upstream 998965 24944908 ~ 24972465 (-)

Expression


Co-expression Network