LOC110511826 (LOC106573635)


Basic Information

Item Value
gene id LOC110511826
gene name LOC106573635
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 23981215 ~ 24015777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592581.2
CTCAGGAGGTACTTCTATGCACGCAACAGCGCGAGTTCACACAAGATTAGGCCTACCGGACTGAGAAGccagaaaaataaaaacatttacagatgctatcacaggtgcagcgaaatgcttgtgtttctgactccaacagtgcagtaataatagCCTACCTATCAATAAAACTGaaaataaagttaaaataaataaataggctaTCATGCACACATGAAGCACTCCAAACCAAAGACAATTAAGAAATGGACAGAAAACTGGTAAATATAATTAAATAAACCTTATCTCCTTTCACACAAGTGTAGCACAGTTTGCGAGCTATCCAAATAACGTGTCCACTTAAATAAATAAAGCCGTAGGCTAAATTAATGTAATAATGTGAACTATGGGAAATTACTGGAAATGGCAAGGATTAACGGGATATTGGATAAACATTAATAAACAaagggcaaacaattcacaccATGGAATAATTCATTCGCACGGATTGGCGGGAGATAGTGAAGATTGTGGAGAAAGAGGCACATACTGTTTCTTCGCCACAATGCCCTTTCTAGTATTACAATTCACTAATGCCTTGAAAGTACCAATAAAACCAGTTCAGCTAGTTTGGCAGTTTGGCCCTGTCTGAGACATCATTTGAGGCCAAAGCATCAGTAGAGGGCGCAAAAGCTTTGGTCTCGCATTGAGCAGTATGTGGGGTGGATTTGTGACGCTGTCATGAAAGGAGAAATGGAAGAGGCTGTCCTAGACAGACCATGAAGCTTTATACTAAAATCCTTTATACACAGAGTTCCGTTGACACAGCACAGAACACGTGTTTCTGTGTCAGCATCGTGTCTTTGCACTTCAGGAGCGACAGACAGGATCATAAACATTCAACTGGAGAAGAAAGAAAAaagggagagacacagacaccaaGCAAAAAGCCGTGTCCCCACAGGAGCGAGCAATGTCAAGTTTAAAGAAAAGATATTCGAATTCGTCAGCCGAACGGGATGTGGAAGACAAGGAGGTTACGGAGAAGATGCTCTCTCCAGTcggaggagagaatggaaactCAAGCCCGGATAAGGTACCCGGGGAAGAGAAGGTTGTCCTAGAAAGAACCATTACCCTGGTGAATGGCGTAGCTATCATAGTGGGTACCATTATCGGCTCGGGTATCTTTGTGACCCCGACTGGAGTGGTGAAGGAAGCCGGGTCCGTCGGACTGTCCCTTGTCGTTTGGGCAGTGTGTGGGGTATTCTCAACCATAGGTGCACTGTGTTATGCTGAGCTGGGCACCACTATTTCCAAATCAGGTGGTGACTATGCTTACATCCTTGAAGTGTATGGTTCCCTGCCGGCTTTCCTGAAACTGTGGATCGAGTTGCTCATCATCCGCCCGTCATCGCAGTACATTGTCGCGTACGTCTTCGCTACCTACCTTCTCAAGCCAATCTTCCCTGACTGCCCTGTACCCGAGAATGGGGCGAAGCTGATCGCCTGTCTTTGCATCTTGCTATTGACTGCTATAAACTGCTACAGTGTGAAGGCAGCCACGCGGGTCCAGGATGCCTTTGCAGCTGCCAAGCTCTTTGCCTTGGGCCTCATCATTATTATTGGTTTTGTGAAGATTGGCAAAGGTGACACAGTCAACCTGTTACCAGAAAATTCTTTCAAGAATTCAAACTACGACTTTGGGAACATTGGACTGGCCCTGTACAGTGGTCTGTTTGCGTATGGGGGCTGGAATTACTTGAACTTTGTTACAGAAGAAATGATTGAACCTTACAAGAACCTGCCTCGTGCTATCATCATCTCCTTGCCCATCGTCACTGTGGTGTACGTACTGACTAACCTGGCCTACTTCACCACTCTGAGTCCAGAAGAGATGCTGAGCTCTGAGGCTGTGGCGGTGGACTTTGGAAACTACCACCTGGGCCCCATGGCTTGGATCATCCCTGTGTTTGTGGGACTGTCCTGTTTCGGCTCTGTTAATGGCTCTCTCTTTACATCATCCAGGTTGTTCTTTGTGGGCTCAAGAGAAGGCCACCTCCCCAGTCTGCTGTCCATGATCCACCCCGACCTGCTGACCCCTCTGCCGTCACTCATCTTCACATGCCTCATGACGCTGCTGTACGCCTTCTCCAACGACATCTTCTCTGTCATCAACTTCTTCAGTTTCTTCAACTGGCTCTGTATTGCCATGGCGATAATCGGCATGATGTGGCTGCGCTACAAGAAACCTGAGCTGGAACGACCAATTAAGGTGAATATCCTGCTGCCTATCAGCTTTGTCCTGGCTTGTATGTTCCTCATCGTGGTGTCCATCTGGAAAACACCTGTGGAGTGTGCCATTGGCTTTGGCATCATTGCCACTGGAGTGCCAGTCTACTACATTGGCGTTTGGTGGCAAAACAAGCCCAAATGGCTCCTTCAGTTTATCTtctcttccACGGCGCTTTGCCAGAAGCTGATTGGGGTGGTACCACAGGAATCCTGAAGAGGAGCTAAAGCGACGAAGCCCCTCGACATACAACCCCAGTGACCACTTATCTACCCCCTCACCCCTGGAGGCACCTGCTCCCAGTCTACACCCTCACTCAGCCCCCATCAATGTTTTTTAGGTCTAATCATTCCTTCTGATCTCCTAGTGTTCTAGTGCAGGAGAGCCATGCTGCTAGACTGCTGTGCCCAGCACGGCCCCCCTCCACCCTGCACATACTGTAACTGTTGGGATACCTTCAGACAGGTTTTCACTGCAAACGTTGTTTCAGTCTTCAAGATTTTGTTGATCTTGAATGTCTTTGTACCGAACCACGGCTCACAAGTGTTGTATTTATGAGGATTATGTAACTTCTGTTTACAGAAAAATTTCCTCTCGTTCAAACTATTCTTTCACTGAAGGTTTGGCATCCCTGTGTTCATATAGTTGCAATCTGTGCTTTCAGTCAATTGTGATGTGTGGCCTGGCTTGGTGCTAATTCCTGGTAGGCCAAAGCTAGAATTGTTGTTCAGATTCACTGACTCACTGTTTCACAGTTGTTCTGCCATTACCCAGTTAGTGAGTCAACTGCTTCCCAGAAGGGCATCGTGTCTGTTTGTTGCCATGGCTTCTATTTCAGCAGCTTACAGGCTGTTGAACGCAGACATTATGTGTTGTAGTCTGGGTGTTTGTTTTTCTGTATGCTTTTGTTTTCAGCTTTTTTTGGGGAAAGGTTTAATGTATCTGTAAAGGATAGCGAAATATCAATTTGATTATACTAGTGCCTCTGATAAAGCCAAGGCTATTCAGTTCCCTGACTACAGACACACTTGAACTCATCTGACCCCTGAGAAGCTGAAAACTGAGGGAAATGGACGTGTAACAGTGGTTGGAGCGTAAGTGTTATAATTCTTATATGATAGCACCCCTCCCCATCTACGGCAGATCAGACTGGCTCACTGCACCCTGTGCACCATGTTGTAAATCCCTGCTTTGGCCGTTATTTTTAAAATCTTTGTAGATATGAATTTCTACTTTCATGAGGTAGATGCAGTGGAGCTTTTTTttaatgctgtcaattaactttttTGTATATCCAAGGACGTCTTAGTTTCCCGAGAGATTACTGGTTCACAAATAGACCATGCATGGGacataattattataattatagtTATTTTTACAACTATTCCGAGTATACAAATTACAGAGACCCTTTTGCTTGTCTGTAGATTTGTCATTAAATCACCAGTAGCCTTCCGACTGTACCATGTCTTACCTCAGTGGACCTACAGTATCACAGGAATATAATATAGCTGGTTGTAAATCTTACAAATATAacatcatgttttttttaatgctgATGTAATACAAACTTGTGAACATAATAGTTGTCTGCTTGAGCTCAATCCAGACTACATACATTACGAGCAAGGATTTCATTTGTTCTTAGATCACAATGATCTTGTGGGTATCATCAGATGCACATGGGTATTGTTGCTATTAACTACTGTTATGTCGAAGAGTTTTAAAACAGGACAGGTTGTAACCAAGGCCCCCAATAGGAACACTGTCACAGTGACTACTTTTTACCTGTGACAAGGCTGGCTAATAACCTCCGAATTTTGGGTTAGAATGGGCTATTGTGGGTGTGTGCATGTCTTAGAATAGGGTCACAGCTGTAAAGATGATTTAATTGTTTTAGTGTGTCTGTTTCTGCTTGCATGTGTCTACTGTACGTTGTCACTACTGTCAGCAACTATCAACTTCATAAAATGATTTCTACATTTAAGTGTGATGATGAGATTTGTGCGGTAAAGGTTTAATGAGGTATGGACCATGGTTGTTGGAGATGTGTGGTTTCCCCGTCAAAAGGTGGGTAGGCGGGCAGGGCATAGCAGAGCAAAGGTTAAAACCACAGTCTTTGGATACAGATGCCTCAGAGGGTGGGACAGGGGAGACACAGGACTGGAGGTGGATGGTTGACAAGATTATTAATTCattgttatttttttgctgaAAAAGAAAATTTCAAGCGTACTATATTAACAAAAATCATCCTGCAGAAGCTTGTCCAGACCTGTTTATTTGAATGTGTTCCTCCACATTGTGACACAGTAAAGCTTTGTAAAGCCAATGACATGTGTTGTGCTATAGACCACGTGGTCACTGTGGTAACCATATAGCTCATGAGTCTGACTTACCATTGGTTTCCTGGAGGATGTGTCATTGTATGTAGAACAGCAGAATGTCTTGCTAACACTCCAGCCATCAGAAGATGTTAACTAATTTAAATAGCACTGTAgaaggttttatttatttattgtaggATCTGTTAGTCCCCACATTTTTTTACAGGGCATTTGTTAAAGTGCTTTatgaataaatatttttttccataCGTGTATGTATTGTCAAATTTTTGGTCTCCTTTATCCTGTGTTCTTATCATGTTAATAAAATATGTTTCAATGCAA

Function

NR:

description
large neutral amino acids transporter small subunit 1-like

GO: NA

KEGG:

id description
K13780 SLC7A5, LAT1; solute carrier family 7 (L-type amino acid transporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592581.2 True 4947 mRNA 0.44 10 23981215 24015777

Neighbor

gene id symbol gene type direction distance location
LOC110511707 LOC106573634 coding downstream 35272 23941895 ~ 23945943 (-)
LOC110511130 LOC106573631 coding downstream 120186 23821656 ~ 23861029 (-)
LOC110510928 det1 coding downstream 206350 23769293 ~ 23774865 (-)
LOC110510575 LOC106573628 coding downstream 361440 23321071 ~ 23619775 (-)
LOC110510264 LOC106560960 coding downstream 1024822 22915370 ~ 22956393 (-)
LOC110512077 LOC106573636 coding upstream 18448 24034225 ~ 24049433 (-)
uba2 sae2 coding upstream 34532 24050309 ~ 24072410 (-)
LOC118948024 NA coding upstream 75827 24091604 ~ 24102924 (-)
ccdc113 ccdc113 coding upstream 103447 24119224 ~ 24126628 (-)
LOC110513500 LOC106573646 coding upstream 217439 24233216 ~ 24288176 (-)
G23839 NA non-coding downstream 65857 23915118 ~ 23915358 (-)
G23838 NA non-coding downstream 68108 23912882 ~ 23913107 (-)
G23833 NA non-coding downstream 71978 23908912 ~ 23909237 (-)
G23832 NA non-coding downstream 72654 23908257 ~ 23908561 (-)
G23831 NA non-coding downstream 74099 23906897 ~ 23907116 (-)
G23932 NA non-coding upstream 59624 24075401 ~ 24075685 (-)
G23940 NA non-coding upstream 66315 24082092 ~ 24082376 (-)
G24514 NA non-coding upstream 80799 24096576 ~ 24096892 (-)
G24515 NA non-coding upstream 87771 24103548 ~ 24104450 (-)
G23394 NA other downstream 356866 23624026 ~ 23624349 (-)
G22350 LOC106573623 other downstream 1137910 22839845 ~ 22843305 (-)
G21993 NA other downstream 1599007 22381870 ~ 22382208 (-)
LOC110507736 LOC106573601 other downstream 2433442 21535882 ~ 21565723 (-)
G24542 NA other upstream 207130 24222907 ~ 24226490 (-)
LOC110514811 ccl8 other upstream 536814 24552392 ~ 24554074 (-)
znf276 znf276 other upstream 848310 24853824 ~ 24865158 (-)
LOC118956210 NA other upstream 912571 24910984 ~ 24938701 (-)
LOC110518671 klhl36 other upstream 929131 24944908 ~ 24972465 (-)

Expression


Co-expression Network