LOC110512398 (LOC106573641)


Basic Information

Item Value
gene id LOC110512398
gene name LOC106573641
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24085669 ~ 24091336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592826.2
ATACCATAGAAAAAGGTCAACAGATTGATAAATTATCTGTTGCACCCCTGCTTTCAACATCTGCGCAGTTTTGTTTTCATGTTATGAAATGTGTGTCAGCAAAGGGATTTATTCGTGTTGATAAACACCCACATTTCCTCATCAGGGGAAACAGCGTTATGAATGGGAGAAATGGTATCCTGTGGTTTGACTATCCCAGTGCTCTTTCAgctgtgtttgttgtttttggcACCATACATCAACGGCAGAACATTTGAGAATTGTCTCACGGGCAAGTCATGTCGATCGGAAAGACCTCCCGTAGTCCTAATTCCTGGAGACCTAGGGAATCAGTTGGAGGCCAAGCTGGACAAGCCCAGTGTGGTTCACTACATATGTTACAAGAAGACGGATGTCTATTTCACATTATGGCTCAACCTGGAACTGCTGGTGCCGGTGGCCATCGACTGCTGGATCGATAACATAAGACTGATTTACAACCGCACATCAAGGCAGACAGAAGCTCCTCCGGGGGTAGATGTCAGGGTGCCTGGCTTTGGACAGACCTTTTCTCTGGAATACCTTGACCCCAGCAAGCGCGATGTTGGTATGTATTTCGTCACCATAGTGCAGTCGCTGGTAGAATGGGGATATACAAGAGATGATGATGTTCGAGGGGCTCCGTATGACTGGCGTAAGGCTCCAAATGAGAACAAGGCCTACTTTTTGAGTCTGCAACAGATGATTGAAGATATGGCAGAGAAGGCTGGATGTCCAGTTGTACTGATTGCCCACAGCATGGGGAACATGTACACCTTGTATTTCCTAAACCATCAGCCCCAGGCCTGGAAGGATCGCTACATCAAGGCCTTTGTGTCTTTGGGTGCTCCTTGGGCTGGAGTGGCCAAAACCATGAGAGTTGTGGCTTCTGGTGATAATAACCGTATTCCAGTCATCAGTTCACTAAAAATCCGCTCACAGCAGCGCTCTGCAGTCTCAACCACATGGCTGTTCCCATATGCACATTCCTGGCCCGCTGACCAGGTCCTGATCCAAACACCCACCACCAACTACACCGTCAAGGACTACCAGCGCTTCTTCAAGGATATTGATTTCGAAGACGGCTGGGAGATGCGTCAAGACACTGCGCCACTGGTCAGTGCACTGGAGCCCCCTGGGGTGGCCATACACTGTCTGTACGGCAGTGGAGTTCCCACAGCGGAGGGTTTCATCTACACCAACTTTCCTGATACAGATCCCACACTGATTCTTGGAGATGGGGATGGGACAGTCAACCTGCTGAGTGCCACCCAGTGCAAGCGTTGGATAGGCCACCAAAATCAGCCTGTCCATATGCTTGAGCTGGAAGGGAATGAGCATGTGGCAATGCTGCTTAACTTTACGACGGTCGCCTACATCAAGACTGTCCTTTTTGACCCTTGAGCGACCAACTAGATCTGATCTTAAGAGAGTCACAAACATGAAAAACTGTGATAGTGCAAAGAAGATGAACGATAGGCTTGTGGATAGATTATGACCTCGGAGCCTGATGAGGAAATGTTTTACCCTATTCCTGATTTTTATTATAAATTATCCCCTCAGCAgacattgttttttcccccataGTGTCAATCCAAATGTGACAGTTAATTGATATTTTAAGTAATGATTCAGTTTTCTAAGATATTTTCCAATCCATTTAACTCCGATTACCAGATTGTTTCCTGTTGTGCTAAACCAAAATGCGTTGTGATTTTATATACGGATTTTACCACATTATATTTAAAGCATTGGGGGCATAGCTACAATAAGATAGTAGTATTTGTACCATTAACATCAGTGATTTTACTGTACACATTAGCCATGTGAACACAGAAATAATAACTTTCGTATTCATTTTTTTAGTCAGACCTTTTCTGCTGTTACAAAGcgttacattttgttttgttctgtAGGTCACCGTATGTATAGTATACCGGTTCATATTCTGTATGTATAACATAAGGAAATAAATGACGGTAATGCCTGTACTTTTGTTCCTAAAA

Function

NR:

description
group XV phospholipase A2-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
K06129 LYPLA3; lysophospholipase III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592826.2 True 2024 mRNA 0.45 6 24085669 24091336

Neighbor

gene id symbol gene type direction distance location
LOC110511358 LOC106573633 coding upstream 180494 23872914 ~ 23905175 (+)
LOC110511247 LOC106573632 coding upstream 263315 23805014 ~ 23822354 (+)
LOC110511054 NA coding upstream 294110 23787493 ~ 23793379 (+)
LOC110510174 LOC106573623 coding upstream 1216290 22713674 ~ 22869379 (+)
LOC110513869 LOC106560949 coding upstream 1462227 22620666 ~ 22623478 (+)
LOC110512529 LOC106573640 coding downstream 14010 24105346 ~ 24114557 (+)
LOC110513011 LOC106573643 coding downstream 36565 24127901 ~ 24151730 (+)
LOC110513138 fa2h coding downstream 80819 24172155 ~ 24207840 (+)
LOC110513261 LOC106573645 coding downstream 122586 24213922 ~ 24222394 (+)
LOC110513717 LOC106573649 coding downstream 276693 24324553 ~ 24408112 (+)
G23942 NA non-coding upstream 2299 24083165 ~ 24083370 (+)
G23939 NA non-coding upstream 3270 24082196 ~ 24082399 (+)
G23935 NA non-coding upstream 5757 24077504 ~ 24079912 (+)
G23933 NA non-coding upstream 9275 24076180 ~ 24076394 (+)
G23724 NA non-coding upstream 24840 24059644 ~ 24060829 (+)
G23951 NA non-coding downstream 3166 24094502 ~ 24094815 (+)
G23953 NA non-coding downstream 4479 24095815 ~ 24096058 (+)
G23956 NA non-coding downstream 8027 24099363 ~ 24099759 (+)
G23957 NA non-coding downstream 8515 24099851 ~ 24100142 (+)
G23960 NA non-coding downstream 11551 24102887 ~ 24103466 (+)
G23135 NA other upstream 510674 23574592 ~ 23574995 (+)
G23109 NA other upstream 546806 23538396 ~ 23538863 (+)
G20773 NA other upstream 2517481 21567545 ~ 21568188 (+)
G19400 NA other upstream 3775771 20309425 ~ 20309898 (+)
ccl4 ccl4 other downstream 413319 24504638 ~ 24506125 (+)
G24123 NA other downstream 459189 24550525 ~ 24552435 (+)
G24295 NA other downstream 748649 24839985 ~ 24840462 (+)
G24307 NA other downstream 765608 24856944 ~ 24857251 (+)
G24435 NA other downstream 1019874 25111210 ~ 25111861 (+)

Expression


Co-expression Network