LOC118948024


Basic Information

Item Value
gene id LOC118948024
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24091604 ~ 24102924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973051.1
gggggccgaatactttcgcaaggcactgtatataatctatatatacttgtgttccctcaaaaaaaaaaacatttttttaaatgttcccaTTTCTTATTTTTATGACATAAATCAAGAAAGTTTATTTATGAATTTGTAATTGAAAGCTTTACATATTAGAATGTTAGTCAGTTACAGTAACAGCTCTGAAGAGGAAATAGAAAATGTGCTATTAGAGGATGTAACAAAAAGGCTACGATACTGGCACAGAGATGACAACTCATTAAGGAAGAAGCACAAATCAGAGGAACACACCACCAAAACAAGGGAGGAAGATGACTTCAAGTCCAGACTGCCTCTTCCTGGCAGTGTGCTGGACATGTTTACAGAGGAAGATGATGACCCACAGACTGGACAACATACAACATGGTGGACGGATTCACTCTTTCAaacatgagaggagaggggaaactgGGCCACTTAAGTGTACTTTCCACACATCCCAGAGGAAGGGTTCTTGGAGCTGCTTGATGAGATGACTAAAGTAGCAGGATCCCATGACATCTCCCTCACTCATACAGACGAGTTTCACCTCAGTCTAAGACAGTGGTTCTGAGGCATCATTGGATCCAGCCTTTCATACAGTCCCTCAGAACAGGCTTGGCACATGGCAGGAGGTCTGCTATGGTTCATTTCTTTGGCTGAGAAGCTGAAGGTCTACTCCAATGATGATAAAACCAGGACATTACTGGCTATGGAAGTTTCCACAGGACAGGCTCAGCTACTAGAGCTTATGAAAGCAGTGGATGGCACCATGGAGGAGTTCACCCTTGTCACTTTTTACAAGAATCCTTCCTTCCATGTAAGTCTGACCTGGTGTGTTGAAGAGTGTCTGCAGGAGTTGCAGGGTTTGGTTGACTCCCATGAGGATGGAGCCTTCCTGTTGAGACTGGACTGTCAAGAGTTGCAGCGTTAGTTTGGGAACAAGACCTTTTCCTTTCCGCTACACTGACAACCAGTTCTCATTCATTCTGTGGTCAACTGTAATGTTGTGAAACCTGACAAATGTTCATAATTGACCTACAGAATGAAACAGTAGTTGTCAACTAAAGCTTTTGTTAGATTAAGCCTTACAGGCCTAAATCCATTTTTAAAGTGTGACTTGTGAACTAGAAGGATATAATTCATTAATGAACCTTTTTGATTAAAGAGGATATAATAATCCTGAACTAACACTCCAGACGACAGGACCCAATGACTTATGGCACAATCACTCGTGGCTTTCTGATGAGTTCAGAAACCCTGATTACGTGTTGCAGGTGCATATGGTAGGTCCTGTTTGATCCGTGAAAGTACTGAAGTAGATGTGTTAAGACATCTGAGGGGAAGAGGTAGTCTCTTTCGCCAGACAATGGGCGCGCTGCACGCACGCTCCACGGCAGCTGTGAGAAGAGACTAGGGAAGAGGAACCTCTGAGGCTGATGAAACAGAGTTCCAATTTTCACTCCCTCTTACTTTAACAGAGCTCCCACAGAAGGCATTTTACTTAATGGGCAGTACACAAACAGGGCAGTA
>TU28250
gacaaaaacaacacagttacacatgggataaacagatatacagtcaacacaatagaaaaatctatacacagtgtgtgcaaatgtagtaagattaggtaataaatagaccatagtggcaaaataatgacaatttagcattaacactggagtgatagatgttaATGTGCAAGTAAATGAAACAGCCCCAGTGTCTCACAGAGACTAACGTCTTGTTCTCTCCCCCGTCAGGGTTTGGTTGACTCCCATGAGGATGGAGCCTTCCTGTTGAGACTGGACTGTCAAGAGTTGCAGCGTTAGTTTGGGAACAAGACCTTTTCCTTTCCGCTACACTGACAACCAGTTCTCATTCATTCTGTGGTCAACTGTAATGTTGTGAAACCTGACAAATGTTCATAATTGACCTACAGAATGAAACAGTAGTTGTCAACTAAAGCTTTTGTTAGATTAAGCCTTACA

Function

NR:

description
U6 snRNA phosphodiesterase isoform X3

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973051.1 False 1554 mRNA 0.43 7 24091604 24102924
TU28250 True 456 lncRNA 0.36 1 24092044 24092499

Neighbor

gene id symbol gene type direction distance location
uba2 sae2 coding downstream 19194 24050309 ~ 24072410 (-)
LOC110512077 LOC106573636 coding downstream 42171 24034225 ~ 24049433 (-)
LOC110511826 LOC106573635 coding downstream 75827 23981215 ~ 24015777 (-)
LOC110511707 LOC106573634 coding downstream 145661 23941895 ~ 23945943 (-)
LOC110511130 LOC106573631 coding downstream 230575 23821656 ~ 23861029 (-)
ccdc113 ccdc113 coding upstream 16300 24119224 ~ 24126628 (-)
LOC110513500 LOC106573646 coding upstream 130292 24233216 ~ 24288176 (-)
LOC110513605 LOC106573647 coding upstream 194774 24297698 ~ 24343156 (-)
LOC110513914 LOC106573648 coding upstream 305121 24408045 ~ 24410610 (-)
LOC110514811 ccl8 coding upstream 449468 24552392 ~ 24554074 (-)
G23940 NA non-coding downstream 9228 24082092 ~ 24082376 (-)
G23932 NA non-coding downstream 15919 24075401 ~ 24075685 (-)
G23839 NA non-coding downstream 176246 23915118 ~ 23915358 (-)
G23838 NA non-coding downstream 178497 23912882 ~ 23913107 (-)
G23833 NA non-coding downstream 182367 23908912 ~ 23909237 (-)
G24515 NA non-coding upstream 624 24103548 ~ 24104450 (-)
G24504 NA non-coding upstream 8120 24111044 ~ 24112648 (-)
G24507 NA non-coding upstream 13875 24116799 ~ 24117790 (-)
G24550 NA non-coding upstream 67409 24170333 ~ 24178502 (-)
G24541 NA non-coding upstream 125115 24228039 ~ 24231869 (-)
G23394 NA other downstream 467255 23624026 ~ 23624349 (-)
G22350 LOC106573623 other downstream 1248299 22839845 ~ 22843305 (-)
G21993 NA other downstream 1709396 22381870 ~ 22382208 (-)
LOC110507736 LOC106573601 other downstream 2543831 21535882 ~ 21565723 (-)
G24542 NA other upstream 119983 24222907 ~ 24226490 (-)
znf276 znf276 other upstream 761163 24853824 ~ 24865158 (-)
LOC118956210 NA other upstream 825424 24910984 ~ 24938701 (-)
LOC110518671 klhl36 other upstream 841984 24944908 ~ 24972465 (-)
G24514 NA non-coding upstream 4077 24096576 ~ 24096892 (-)

Expression


Co-expression Network