ccdc113 (ccdc113)


Basic Information

Item Value
gene id ccdc113
gene name ccdc113
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24119224 ~ 24126628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593038.2
TGTTTACCTTAGCAACCATGGCAGAGACGGTTCAAGATGTTTCTGAAGCAGATAAGCGACATCTCGTTGAACTCGTCAAAGAACTCAGACGCTCCAATGCGGTGCTACGGGCAGAAACTGATATGTATGAGCGGTATATAAGCCGCTTGGACCCCAGGGACTTGGTTCCTCAGCCTTTATCAGATTCTCTGGGGGCAGCTGCAGCATCACAGTTGGAGATTGGAGGGGGCCGTGGGAGAAAGATGAAAACACGGACAACGGCTCTGGAGCAGTTACAACGTCTGACATTGGAGCAAAAGTGTGACGTGGCACAGCGAGAGTTAGATGAAACCAAGGAGGACCTGGAGAAACTGAAGGAGAGCTCAGAAAGAGTGCTCCACAACTATAAGGCAACCTTGGAGGAAGCAGATATTCAACTTGTGGAGGTCAAGAAAGCAAGTTATGAGTTTGACCGTGATGTCGCTAAGGTgttgagggagaagagaggtgtCATGATGGGTGCAGAGAAGGTCATTCGTTATTTTGAGGACAGGATGAGAGCAAAGGACACACTGGTTGAGAAGTTGCGGTTGAAGAATGCAGCTCTCCATGTGCAGAAGAGGAAGTTGCAGTTACAGCTACGACAGAAAGAGGAAATGGGTGAAGCCCTGCACGAGGTGGATTTCCAGCAGCTGAAGATCGAGAACAGCCAGTATCTTGAACGCATTGATGAAAGAAACCAGGACCTTCTGCGCCTAAAACTCCTGGCAGGAAACACCCTACAGGTTCTCAACTCCTACAAGAAGAAGCTGCAGAGCATGACATGTGAGTCAAAGCTGCTTAGTAGTGACATCACCTCCCGTAAGGAGATGCTGGTGAAGATCGAGGAGGAGACACTGCAGGCAGAAGAGGAGCGAGCCAAGGCAGAGACTCTTAACAGGAAGCTGCGAGGCCAGCTGGCAGATTTCCGTGTTCCCCAAGTGCTGCAATACATCACAGCTAAGGCCTCCCATAGCCAGCTCGAGCAGAGTGTCCGAGCCTGGGAGCGAAAAGTTGAGATATCTGAGATGGCTCTGAAGACACACACCAAGACCTGGAACAAGCTGAAGGAAGCTGCAGGAGCAGGACCAGTCACAGCCTGGTGAATCCGCACATGCTTCCTAATAAATCTATTCTCTGCAAATATTCAATCATCCAAAGCAGTCAAAAATCCACCAGTCTCTTTTGTAAACTAGCGGAGATATGCCCTTATAAAGTAGCTGTTTTTAACTTTCAGTATATGGAACATTTGTAGAATGGTTGAACAATCATGTTTTAAGTCACAATTGAACTTATCGCTTGTAGTAGGGTGGTTAAGCTGATAGCTAATTTTTGATAAAAACACAAAATATGTACCCTGAAAAGATTTCAATATGGAGCCACCCCAGATTTGACCTCTGGGGGGTGTGGCAGCCATTTTTTTAAATGGCCCCCAACTAACAACATTTTACAATTCAGAAGGACTGCTTTGAGGTAAAGGCACCAAATTTGTCATAGACCCTAGATTTATGGTCTCTGAAAAGATCTAGATATGGAGCCACCACAGATTAGGCCCCTGGGGGCTGTGGAGGCCATCTTACAAAATGGTTGCCAATGGTAACACTATGGTAGCCTTTGATACCCTTAAAATATTTAGATGTGGCGCCACTGCAGATTTGGCCCTGGCAGCCATCTTACTAAATGTCCCCAGACTGTACCACTATTTTGCAAACCATTAATCTACAAAATGTAATGGCCTATACTTCTTGGCCTGGATCTCCTGAAACACAAAAGGTTTAACAGTTACACACAGTATAATACAGGGATCAACTAGATTAAGCTGCAAACAATTTTTTATTGAGCGAATGGTCaaggggccggaacataattacaaataatttgcaaattgaccgcaagaagcccaaacagatataactAAAACATAATTTCAAATCTTTCTTACATTTGTACACAATCACATACatctctctattatgtgtgggaatactatGGAATAGATTTcaaaaattaaaatcacttagagctaa

Function

symbol description
ccdc113 Predicted to be involved in cilium assembly. Predicted to act upstream of or within cell projection organization. Predicted to be located in centriolar satellite. Predicted to be part of protein-containing complex. Predicted to be active in axoneme and ciliary basal body. Orthologous to human CCDC113 (coiled-coil domain containing 113).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593038.2 True 2045 mRNA 0.45 8 24119224 24126628

Neighbor

gene id symbol gene type direction distance location
LOC118948024 NA coding downstream 16300 24091604 ~ 24102924 (-)
uba2 sae2 coding downstream 46814 24050309 ~ 24072410 (-)
LOC110512077 LOC106573636 coding downstream 69791 24034225 ~ 24049433 (-)
LOC110511826 LOC106573635 coding downstream 103447 23981215 ~ 24015777 (-)
LOC110511707 LOC106573634 coding downstream 173281 23941895 ~ 23945943 (-)
LOC110513500 LOC106573646 coding upstream 106588 24233216 ~ 24288176 (-)
LOC110513605 LOC106573647 coding upstream 171070 24297698 ~ 24343156 (-)
LOC110513914 LOC106573648 coding upstream 281417 24408045 ~ 24410610 (-)
LOC110514811 ccl8 coding upstream 425764 24552392 ~ 24554074 (-)
ciapin1 LOC106573658 coding upstream 469457 24596085 ~ 24611535 (-)
G24507 NA non-coding downstream 1434 24116799 ~ 24117790 (-)
G24504 NA non-coding downstream 6576 24111044 ~ 24112648 (-)
G24515 NA non-coding downstream 14774 24103548 ~ 24104450 (-)
G24514 NA non-coding downstream 22332 24096576 ~ 24096892 (-)
G24550 NA non-coding upstream 43705 24170333 ~ 24178502 (-)
G24541 NA non-coding upstream 101411 24228039 ~ 24231869 (-)
G24621 NA non-coding upstream 181971 24308599 ~ 24308889 (-)
G24670 NA non-coding upstream 288474 24415102 ~ 24415964 (-)
G24672 NA non-coding upstream 290325 24416953 ~ 24417509 (-)
LOC110511130 LOC106573631 other downstream 292733 23821656 ~ 23861029 (-)
G23394 NA other downstream 494875 23624026 ~ 23624349 (-)
G22350 LOC106573623 other downstream 1275919 22839845 ~ 22843305 (-)
G21993 NA other downstream 1737016 22381870 ~ 22382208 (-)
LOC110507736 LOC106573601 other downstream 2571451 21535882 ~ 21565723 (-)
G24542 NA other upstream 96279 24222907 ~ 24226490 (-)
znf276 znf276 other upstream 737459 24853824 ~ 24865158 (-)
LOC118956210 NA other upstream 801720 24910984 ~ 24938701 (-)
LOC110518671 klhl36 other upstream 818280 24944908 ~ 24972465 (-)

Expression


Co-expression Network