LOC110513500 (LOC106573646)


Basic Information

Item Value
gene id LOC110513500
gene name LOC106573646
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24233216 ~ 24288176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593323.2
GCTGGAATGCTTTGACGTCAGTAGCAGGCCAACCCAGGCCAGCGCTCAGAGCGGATCAGACGGAGGTGAATGCACGAATAGGCTAGCCTACTGCAGAGAGACGCACTCACATCGAGCATCCCTGTTGCCTCGTCATTTGCGGAGACATCGGGGCACGCAAACACTACACACCTGGCACAGTCAATACAACAGGGCGAGGGGAAAATATTGTGTAATAGCGTTATTAAGATTTTAACACATCAAGTAGGCTAGTATTCTTGGTATAGAAAGAAGTGCATTGCTGTTTACAGTGGTGGGTCGCTCCACTAGCCTCAAGGATAACGCATTCTCCTAACAATGGTAATGCATCAGTAGAGAGAGCCTCCAGCccaaccctccctctcttcatacCGAGACCCCTCATCCAGACTGAGACTGTCTCCAGCACCAACACACCACTCCCCTCACCCCGCCCTTGCCCCGCCCCACCCAGACATGGCTGCTTCTAAGGGTGGCTACGAGGGCAAGATCGCCGGCCTCTACGACCTGGATCGCACGCTGGGGAAAGGCCACTTCGCCGTGGTCAAGCTGGCCCGCCATGTCTTCACAGGCCAGCTGGTGGCGGTCAAGGTGATTGACAAGACCAAGTTGGACACCATGGCAACGGGCCACCTGCTGCAGGAGGTGCGCTGTATGAAGCTGGTGCAGCACCCCAACGTGGTGCGGCTCTATGAGGTCATCGACACCGCCACCAAGCTCTACCTCATCCTGGAGCTGGGCGATGGAGGGGACATGTATGACTATATCCTGCGCCACGAGGGTGGAGTGGCCGAGGACACGGCTAAAGTTCACTTCGCCCAGATCGTCCAGTCCATCTCCTACTGCCACCGGCTCCATGTGGTGCACCGAGACCTCAAGCCAGAGAATGTGGTGTTCTTCAGGCAGCAGGGTACAGTCAAGCTGACCGACTTCGGCTTCAGCAACCTCTTCAAGCCCGGGACCATGCTGATGACCAGCTGTGGTTCGCTGGCTTACTCCGCCCCAGAGATCCTGCTGGGGGATGAGTATGACGCTCCGGCTGTAGATATTTGGTCACTGGGGGTGATCCTCTTCATGCTGGTGTGTGGACAGCCGCCATTCCAGGAGACCAATGACAGTGAGACGCTCACCATGATTATGGACTGTCGCTACACCGTCCCCGCCCATGTCTCCGCAGACTGTAAAGAttTGATCTCCCGTATGCTGCAGAGGGACCCGTCTAGCCGTGCCTCCCTGGAGGAGATCGAGAACCACCCCTGGCTGCAGGGGGTCAACCCCTCCCCCACAGGGCACAGTGCCGCCCCCCTCACCTCCCACCGCAGCCTGTCCCAGGAGGAACACGAGATCATCCTCCACGCCATGACCAGCGGCAACATCGCTGACCGCGATGCCATCCAACAGGCTCTAGAAGCGGATCAATACAACCACATCACAGCCACGTATTACCTGCTGGGGGAGCGCATCCTGAGAGACAAGCAGGAGCAGCCCAGCGAGATCCCGAAAGTTGACAGTTCGTGGGCCGAGCCATCACAACTCCAGAGGCCGCGGTCTGAGCCTCTGGATCTGGAGCAGAGGGGGCTCCATGGCCTGCTGGCTGGCTGTCCCCGCCGAGGGGTGTCTGATGCTGTGGACTTCCTGACCCACAGGCCCCTGCTGCTTCAGCCACAGCCAAGTCGCACAGAGAGCCCCTTCCCTGAGTACAGCACAGAGCCCTGCCTGGGGCTCACCCTGCACCCTTCACCTCCTGACGAACCTCCACAGATCAAGAGCCTGGGAGCCCTGCAGCTTATctgtgaagaggaagaggaggaggaagatgaggcgGAAGAGACAGGCAAACCACATGTTGGATTTCATAATATTCAAACACTGCCTCATATAATAGGCTTGGTATCAACCTCTGTGTCTACAGAACAGTCTAGTCCCATGCTCACAGCTCCAGAGGCTTCACAGAGCCCAGTCAGAGTAGTCCCAGGTCAGGGAGAGGAAACAGGCCTGTTGGCCACCTCAGTGGAGGAGGcactggagacagagaggggggagtgggacAGGGAGCTGCAGGCCAGGGTTTCTAGCCACAGCAGAGAGATGGAGCCTGACCAGCTGGCAGCCATACAGGAACAAGAACAGGGTATGATGGAGTCAGGGGAGAAGCCCATGGAGGAAGGAGACATGTCATGTGACCAACTGAGGCTAGGTAGTCATTTGACTTCAGACCAGCCAATCAATGGTAGTTCGATCAGCCCTAAAGCTCAACCTCCATACCTGCCTCGCCTCGGGGGGGTGCAGTGTTGTTGTGGGCAACAGGAAACTCCCAGCCCAGACATCATAGAAGGGGAAGATGCTATTcttaaaaacaacaacaccacagAGTCCAAGCCTAAGCTCCTGGTGCAGGGTGGGGGGTCCACCCCAGGCGCCTCACCCCGCTCTCTGCCCCATAACCACTGTGTGGACCTGGGCCCCGACGGGGTGGAGATGACCCGCAAGGTGAGAGGGCTTGGTGGGGAGTCTGAAGGGGACACTCCGGAGGAGCTTCAATTAGAGAGATCCCACAATGCACCACAGGGTCGCCTTGGGCCCAGGGAGACGGGGACCGACCCTACGTTCAGACTGGATCCTGGAAAGGGGAAGAACGTGAACCTGAGAGACCGCCTGCTGCAGTTCCCTCTCTgtgagaaggccctttccttcaACATCCAGCCCACCTCCAAGGAGAAACTCCTACCCTTCGCCCAGTACAACTGCTGCCATGTACTGTAGGCAGGGCCACCTGTAGATACCCTATACCTCCCACATTACTCACTCTGTCCCCTAGCCAAGGGGTAGGAATGGGCATCACTCCAGACACCCTCACACCAGGCCCAGACCCTGTCACTGTTCCATCTACTTCAACTTCAACACAAAACACTGGTGCAGACAGTATGTAGCCTATCTGAACTATCGGTCTGCGTCCAACCTAAACGGAATTATCATACTGTGACCTCAGACACGTTCCAGCCAATTGTAGTTAGACCTGTGTGGCCCCCACCCTGACCTCTTCATACTTAACGTCTACTGCTGCTTTCTTTGTGAGACAAAAACTGGACCTCATTGTGCTGCTATGTACGGGACTATAGAAAATGCTTTTTGTGTGGTCTTCTTAGActatcactatatactgtagcttTGAATTGATTGCTATTTTATTTGCCCTTGTATCATAGCTTTTCATTTTGTACTAGCCTATCTAGAACTGAGCCCATTTTAGCATATGGTATGTTGTCACTCTGAGGCCTGCTAGTACAGTGCTATAATTGGAATGTGTAAGATGATGCATGCTGTATAGGTGAAAGCTACACTCCATGCCTCAGGCGCCATCCTTCGTTAGCTCAGCTAGCGGCATGATGGAAGGTGTGATGATGCTCTAGACAGTGTAGCTGGAAGCATGGTATAATTTAATGCGCGGGGTTACTTACGTCAATGACATTGTTGGTGCACTAATGTGGGTGCATTGTTGAATCTCAGTGGTACACAGTAGTGCAGAGGAGATGTGTCGGGCAGCGTTGCTCATGGTCACGTGATGAAGTAGCCCCGCTTGCGAACTTCAAAACCAGTGTCTGACCTTGGACCATGGGGGAATTTCCTCTTGGTCTACTGGCCTGGTTGCTCCCTAGGGAGACCCGCGATGATATCCTGTATGTTACATTGGCGACCAACGTGAGGCGATCTCTCGTGGgggaggaggtcaaagggggGTGAATGTAGTGGACTTGTCGGACTTGGTTGCTCATGGTCACGTGATCAGGGTCTGCGTTGGGAGCCGTGGGAGACCATGGTTCATATCACGTGTGTTACAGTAGCAAGGCTTGGGATCTAAACTGAATGTAAGAGCAACACCCAGGGAGAGAAACATTTTTGGACAGAGTTTCATAATGGagacttaaaaatatatactgctcaaaaaaataaagggaacacttaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtccacttaggaagcaacactgattgacaataa

Function

NR:

description
SNF-related serine/threonine-protein kinase-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0060217 hemangioblast cell differentiation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593323.2 True 4063 mRNA 0.54 6 24233216 24288176

Neighbor

gene id symbol gene type direction distance location
ccdc113 ccdc113 coding downstream 106588 24119224 ~ 24126628 (-)
LOC118948024 NA coding downstream 130292 24091604 ~ 24102924 (-)
uba2 sae2 coding downstream 160806 24050309 ~ 24072410 (-)
LOC110512077 LOC106573636 coding downstream 183783 24034225 ~ 24049433 (-)
LOC110511826 LOC106573635 coding downstream 217439 23981215 ~ 24015777 (-)
LOC110513605 LOC106573647 coding upstream 9522 24297698 ~ 24343156 (-)
LOC110513914 LOC106573648 coding upstream 119869 24408045 ~ 24410610 (-)
LOC110514811 ccl8 coding upstream 264216 24552392 ~ 24554074 (-)
ciapin1 LOC106573658 coding upstream 307909 24596085 ~ 24611535 (-)
gbrl2 gbrl2 coding upstream 409511 24697687 ~ 24711462 (-)
G24541 NA non-coding downstream 1347 24228039 ~ 24231869 (-)
G24550 NA non-coding downstream 54714 24170333 ~ 24178502 (-)
G24507 NA non-coding downstream 115426 24116799 ~ 24117790 (-)
G24504 NA non-coding downstream 120568 24111044 ~ 24112648 (-)
G24515 NA non-coding downstream 128766 24103548 ~ 24104450 (-)
G24621 NA non-coding upstream 20423 24308599 ~ 24308889 (-)
G24670 NA non-coding upstream 126926 24415102 ~ 24415964 (-)
G24672 NA non-coding upstream 128777 24416953 ~ 24417509 (-)
G24675 NA non-coding upstream 138147 24426323 ~ 24426650 (-)
G24679 NA non-coding upstream 152646 24440822 ~ 24441043 (-)
G24542 NA other downstream 6726 24222907 ~ 24226490 (-)
LOC110511130 LOC106573631 other downstream 406725 23821656 ~ 23861029 (-)
G23394 NA other downstream 608867 23624026 ~ 23624349 (-)
G22350 LOC106573623 other downstream 1389911 22839845 ~ 22843305 (-)
G21993 NA other downstream 1851008 22381870 ~ 22382208 (-)
znf276 znf276 other upstream 575911 24853824 ~ 24865158 (-)
LOC118956210 NA other upstream 640172 24910984 ~ 24938701 (-)
LOC110518671 klhl36 other upstream 656732 24944908 ~ 24972465 (-)
G25115 zfpm1 other upstream 992416 25280592 ~ 25281030 (-)

Expression


Co-expression Network