LOC110513605 (LOC106573647)


Basic Information

Item Value
gene id LOC110513605
gene name LOC106573647
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24297698 ~ 24343156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593400.2
ATCAATCTCTGTCCTCTGCTCACACTGCGTTCGTCTGACTTGGTAGCCTGGGGCGAGCCAGACATGCGCCTTCATTGGATTTCTAAAAGATAAACAGACAATTAGGAcaatattttaatttaatttgattaagaatatatatagactactgtatatTCCCTATTCACACGCGTTACATTGTTAATCCGAGTATGCGCACTGAACGCCTCCATTGTCTACCAGCAGCAAGGAGTGAGAGCGAGCGCGCGGATATGAGAATGCAGGGGAGCGGCATACATTGACCCAAATCTCCGGGAACCGGAGAACAAGCGGACCCGGACACACGTATGTCGTTGGAaagacagactggcagacagacagcaacAGTTGTCATGGATATGGTTATGATCAGCTGAACCAGTCTTCAAGACAAAATAATAACATTAAAGGGGGGTAGCCTAGCCTACTGCAGGGAAGCGCGACTGTCGGAACCGTTGTTGCGCTTTGTGCTTGTCATCATCCCTGTTGTGATTTGGAGCAGGCTGTCCTGTCATTCGTTGTGAGGGGAAAACGTTTTGCGTTTTGCTTATCTTCATCAAAGGGAGTTGTTTTTCTGTCATTCATTTGACATCATCCTCCTATAAATGatcatttttctctgttgagctGAATCAAAACATTCGAGTCGCTCATGTTCCTGTCAGGGAAATGGGCTGTTGCGTCTGTTATACACAGCTGCTTTAGTCAGACTTGACAACCGGGATTTTTTAAAGCTGCCGTTTTGTCCCTGGCAAGAGGCGATCAAGTGCACTGCAGACAGGCGTGTCGGGGGCGATTCCAGTGACGGCTCTCGACTCTCTGCGGAGCCCCGTTTCAACAGCCCCCACCCAATTTTATCGGGCGATTTGGATGGGGGGCAAGCAGAGTACGGCAGGGCGGCCCCGGGGTGCTTTTCACGGTGTCTCGGCGGATGACAGCGCAGTGGCACCCTCGGCCCACTTTGGGCACTACCGACCAAGTGGCACTATGGGGTTACGCAGCCGCTCAGTGAGTTCTGTGGCTGGGATGGGCATAGAACATAGTCCTACGGTGCCCTTTGGTTTTTATACCCCCAGAGGAACAGACTCGGACAGGGCTGGAGGGGGGTCTGGCACTAACGCCACCCATGGTAACGGCTACCAGGAAACGGGCAGCGGGCATCACACGGATGGTATGCTCTATCTGGGCTCCCGAGGGTCGTTGGCAGACACCTTGCCCCTGCACATTGCACCCCGGTGGTTTAGCGCCCACAGTGgGTTCAAATGTCCTGTCTGCTCCAAGTCTGTGGCGTCTAATGAGATGGAGGTGCACTTCATCATGTGTCTAAGCAAGCCCCGCCTGTCCTACAACGatgACGTGCTGGCCAGGGATGCCGGGGAGTGTGTAATCTGTCTGGAGGAGCTGCAGCAAGGAAACACCATCGCCAGACTGCCGTGCCTCTGCATCTATCACAAAAGCTGTATAGACTCCTGGTTTGAGATCAATCGTTCCTGCCCTGAGCATCCTTCAGACTGACTGACCTCTGTGCTCCTACTCCTACTGTTCAAGGACACTTTATGTTCCTATCATGGATATCTGGACactgaagtaaccaaaaaaactAAACAATCAAAACAACCTATCTATCAATtgatctatcaatctatcaagaGAATTCCTAGCAAACGGAACCAAAAGAAAAAACATTAAGCTTATACTTTCACTTCCACATGCATAAAAGAGTGCCCCTCCTCCCTGCCACCTCCCCCCTAGCCCTAAAGGCTGCTAACTGCCAGTCCCTATGTTGGCCCAACTAGGCTGACCATCCCTCCAGGCCAACTGCCTCACCAGGCTGCTTGGCcccccagccagccagtcaccacGCCACACGGCCTGGTCCTCTCTGGGCTCCTCCGGGGGTCTGGCCCTTGCTCTGCTCTGCCTTCCATTTTGCCTCCTGAGTTTGTCCCTGCCTGGCTCCATATCACTCATCTGGATCCAGCCATCTCATGGCCTTCAtcaggaagagacagaggaggataATGAAGAAAAAGATGAAGAATAGGGCTGGATGAACCCTGTGTGCCAGGGCAGGGTCGACTCCCAGGGCGTTGTCTGGTAATGCAACAAAAGGCTTTCCCCCAATCCCCAGAGTTACAgcacccacccacccaatcaTTAGTTGAAGAGACATGCGCTTGTCTTAGTCTTTACTTTGAGGTGGAGCAGCGATGTGTGAAGTGCAGCATTGGTGTGGCAGGCAGGGTCTGTCTATGTAGGTTTCTGTttgggttatgtgtgtgtgtgtgtgtgtggaggggtgtagATAATGCTTCTATATGTGTCGGGGCAGTGAAAATATCAGTCAGACTACACCTGTTCTGTGTGCGTTAGTGTGTGGAGGGGTACGTCGTTTATGCTTGGTGGTgggtgaatgtgtgtgagtgtgcttatGTGTCGTGGGGGACTGTTGGGGGTCGTTGGTTTATGTTTTTCTATGTTCTGGGGCTGTGAGGATGACGTCCGTAAGCATACATGTGGTGTGGTTGAGGTTGGGGTGATGATGCAGCCATCTCTGTAGTGTGAGAGCCTGATTTGCTAAAGGGTCAAATAGAAGTCTGAGACAATACTATGTGTtggtctgtgtttgaaatgtttacaatttAGATGTCCATTTTCCCTGTGTGAATGTGGTATCGCTCCCTTTATTTTGCTAATGTTTACAGTTACATAAACTCGACATGACATA

Function

NR:

description
E3 ubiquitin-protein ligase znrf1-like

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005764 lysosome cellular_component
GO:0005768 endosome cellular_component
GO:0016020 membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10694 ZNRF1_2; E3 ubiquitin-protein ligase ZNRF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593400.2 True 2746 mRNA 0.50 5 24297698 24343156

Neighbor

gene id symbol gene type direction distance location
LOC110513500 LOC106573646 coding downstream 9522 24233216 ~ 24288176 (-)
ccdc113 ccdc113 coding downstream 171070 24119224 ~ 24126628 (-)
LOC118948024 NA coding downstream 194774 24091604 ~ 24102924 (-)
uba2 sae2 coding downstream 225288 24050309 ~ 24072410 (-)
LOC110512077 LOC106573636 coding downstream 248265 24034225 ~ 24049433 (-)
LOC110513914 LOC106573648 coding upstream 64889 24408045 ~ 24410610 (-)
LOC110514811 ccl8 coding upstream 209236 24552392 ~ 24554074 (-)
ciapin1 LOC106573658 coding upstream 252929 24596085 ~ 24611535 (-)
gbrl2 gbrl2 coding upstream 354531 24697687 ~ 24711462 (-)
cdk10 cdk10 coding upstream 465416 24808572 ~ 24819243 (-)
G24541 NA non-coding downstream 65829 24228039 ~ 24231869 (-)
G24550 NA non-coding downstream 119196 24170333 ~ 24178502 (-)
G24507 NA non-coding downstream 179908 24116799 ~ 24117790 (-)
G24504 NA non-coding downstream 185050 24111044 ~ 24112648 (-)
G24515 NA non-coding downstream 193248 24103548 ~ 24104450 (-)
G24670 NA non-coding upstream 71946 24415102 ~ 24415964 (-)
G24672 NA non-coding upstream 73797 24416953 ~ 24417509 (-)
G24675 NA non-coding upstream 83167 24426323 ~ 24426650 (-)
G24679 NA non-coding upstream 97666 24440822 ~ 24441043 (-)
G24680 NA non-coding upstream 98436 24441592 ~ 24441837 (-)
G24542 NA other downstream 71208 24222907 ~ 24226490 (-)
LOC110511130 LOC106573631 other downstream 471207 23821656 ~ 23861029 (-)
G23394 NA other downstream 673349 23624026 ~ 23624349 (-)
G22350 LOC106573623 other downstream 1454393 22839845 ~ 22843305 (-)
G21993 NA other downstream 1915490 22381870 ~ 22382208 (-)
znf276 znf276 other upstream 520931 24853824 ~ 24865158 (-)
LOC118956210 NA other upstream 585192 24910984 ~ 24938701 (-)
LOC110518671 klhl36 other upstream 601752 24944908 ~ 24972465 (-)
G25115 zfpm1 other upstream 937436 25280592 ~ 25281030 (-)

Expression


Co-expression Network