ccl4 (ccl4)


Basic Information

Item Value
gene id ccl4
gene name ccl4
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24504638 ~ 24506125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124489.2
GCAGAGAATAAAGCTTGACACCTGAAGTCACAACACTTTACTCCTCATTCACTCTCCACCCTACCTGGACCAACTCTAAGCCAGCATGTTCACCCCTCGTCTTGCTATGCTGTCTGTGCTTGTTCTGGTACTCAGTGCCATCACTTTTACCGAAGgcctgcgTATGGCAAGCGGACCGAAGAAATGTTGTTTTACCTTTGCTGATCGTCAGATACCCAGAGGTAGAGTGGTGGGTTACACCAAGACCAGCCAGCAGTGCTCCAACCCAGCCATTCTGTTTAAGACTCGGGCGGGGCGACAGGTGTGTGCCAGGTCCTCAGACAGATGGGTGAAGGACTACATCAACTTCCTGGACAGCAAGAAGTCTGGGGAGCAGACACCACTCCTGTAACCATGGTGATCGGACCGTCAGCTGCGTCAACATCAAAGCAAATCCTTCAGAACCTCTTTTGTACCTCTATTTCACAAGGACATGGCCAGTGATCTGCCTCAGAGAGAGCAGTCATGGTCCTGAGCCAAAACACCACCTGGATCTGGGGAAATAGATAAGCTAGATGATCTCTATATAACTGTAACACTGTGAGCAGCCTGTATACCTTTCTCTTTAGCATTTGTTGCCTGTGATCAAATGACAGAGATTGATTTGACAGAACGATtgtcaatatttattttttaaattaaactcGATACACACATCCGTAAAACACATAATTGTGTAGAATTTGAGTGTAGTTCCAGGTTATGTTACATTTAAGTATTCTTGATTACTGAATTGTACGTTATAGGCCTATATTCTGTTTTACT
>TU27861
ACACCTGAAGTCACAACACTTTACTCCTCATTCACTCTCCACCCTACCTGGACCAACTCTAAGCCAGCATGTTCACCCCTCGTCTTGCTATGCTGTCTGTGCTTGTTCTGGTACTCAGTGCCATCACTTTTACCGAAGgcctgcgTATGGCAAGCGGACCGAAGAAATGTTGTTTTACCTTTGCTGATCGTCAGATACCCAGAGGTAGAGTGGTGGGTTACACCAAGACCAGCCAGCAGTGCTCCAACCCAGCCATTCTGTTTAAGACTCGGGCGGGGCGACAGGTGTGTGCCAGGTCCTCAGACAGATGGGTGAAGGACTACATCAACTTCCTGGACAGCAAGAAGTCTGGGGAGCAGACACCACTCCTGTAACCATGGTGATCGGACCGTCAGCTGCGTCAACATCAAAGCAAATCCTTCAGAACCTCTTTTGTACCTCTATTTCACAAGGACATGGCCAGTGATCTGCCTCAGAGAGAGCAGTCATGGTCCTGAGCCAAAACACCACCTGGATCTGGGGAAATAGATAAGCTAGATGATCTCTATATAACTGTAACACTGTGAGCAGCCTGTATACCTTTCTCTTTAGCATTTGTTGCCTGTGATCAAATGACAGAGATTGATTTGACAGAACGATtgtcaatatttattttttaaattaaactcGATACACACATCCGTAAAACACATAATTGTGTAGAATTTGAGTGTAGTTCCAGGTTATGTTACATTTAAGTATTCTTGATTACTGAATTGTACGTTATAGGCCTATATTC

Function

symbol description
ccl4 Enables CCR1 chemokine receptor binding activity; CCR5 chemokine receptor binding activity; and identical protein binding activity. Involved in several processes, including negative regulation by host of viral transcription; positive regulation of calcium-mediated signaling; and positive regulation of natural killer cell chemotaxis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Implicated in acquired immunodeficiency syndrome. Biomarker of several diseases, including COVID-19; Plasmodium falciparum malaria; autoimmune disease (multiple); lung disease (multiple); and nose disease (multiple).

NR:

description
CCL4 protein precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124489.2 False 804 mRNA 0.45 3 24504638 24506125
TU27861 True 778 TUCP 0.45 3 24504655 24506116

Neighbor

gene id symbol gene type direction distance location
LOC110514161 LOC106573651 coding upstream 8009 24455040 ~ 24496629 (+)
LOC110514038 NA coding upstream 88834 24414999 ~ 24415804 (+)
LOC110513717 LOC106573649 coding upstream 97807 24324553 ~ 24408112 (+)
LOC110513261 LOC106573645 coding upstream 282244 24213922 ~ 24222394 (+)
LOC110513138 fa2h coding upstream 296798 24172155 ~ 24207840 (+)
LOC110514277 LOC106560914 coding downstream 1501 24507626 ~ 24550216 (+)
LOC110514924 LOC106560912 coding downstream 59874 24565999 ~ 24580991 (+)
exoc3l1 LOC106573656 coding downstream 77563 24583688 ~ 24591030 (+)
prmt7 prmt7 coding downstream 85115 24591240 ~ 24596052 (+)
coq9 LOC106573660 coding downstream 96299 24602424 ~ 24616000 (+)
G24107 NA non-coding upstream 81704 24422731 ~ 24422934 (+)
G23993 NA non-coding upstream 291877 24209799 ~ 24212761 (+)
G23947 NA non-coding upstream 388439 24114706 ~ 24116199 (+)
G23961 NA non-coding upstream 399696 24104091 ~ 24104942 (+)
G24165 NA non-coding downstream 6855 24512980 ~ 24513619 (+)
G24171 NA non-coding downstream 21549 24527674 ~ 24527895 (+)
G24174 NA non-coding downstream 29258 24535383 ~ 24535697 (+)
G24175 NA non-coding downstream 29746 24535871 ~ 24536113 (+)
LOC110511358 LOC106573633 other upstream 604833 23872914 ~ 23905175 (+)
G23135 NA other upstream 929643 23574592 ~ 23574995 (+)
G23109 NA other upstream 965775 23538396 ~ 23538863 (+)
G20773 NA other upstream 2936450 21567545 ~ 21568188 (+)
G19400 NA other upstream 4194740 20309425 ~ 20309898 (+)
G24123 NA other downstream 44400 24550525 ~ 24552435 (+)
G24295 NA other downstream 333860 24839985 ~ 24840462 (+)
G24307 NA other downstream 350819 24856944 ~ 24857251 (+)
G24435 NA other downstream 605085 25111210 ~ 25111861 (+)
G24365 kiaa0513 other downstream 661692 25167817 ~ 25168328 (+)

Expression


Co-expression Network