LOC110514811 (ccl8)


Basic Information

Item Value
gene id LOC110514811
gene name ccl8
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24552392 ~ 24554074 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594017.2
gaatgcactgtacatctcaATATTGTTTGTTATTAAGGCTTGTGGTGATCATAATTGTATAGTCATTTTTGACCTATTACAACTAAATAATGGAAGAGGACAACAGAACGTTCAGCTTCTTCGAAGACTGTTAAATGAATGTTGGTTGATGAATGCATAGCTTCAAATGGCTGATACAGTGTGACCCATTACGGCTTCATCCACTTTTTGTGATGATTTGTCATTCGCTTTCCGGTGACAAAGTTTGCTAGAGATAATTTGCAAGAACTGTGGTGGCACTGCATTTAATCTTATCTTCATCGCCTCATGTTTACGGTCCCGACTCTCAAAAAGGAAGTGACAAGGAAGTAGAATATAAAGATGATAGATATGGTAGTGGTTGGCAGGCTATGGGGGTGTATGGAAATTGGACATCATAATGTCATTCTCTTCTAGGAAATATTAATATAACTCTGGAAGTTCCATCATACATCTTGACAGTATTTATATGAGGAGATGCAACCCTTATGGACTCAGACTACAGAGGAACCAAAACAAAGACAGGTCAAACGCCAGACTTTCGACATCTCAAATCATCATGAAGACTACCTGCTTGGCTCTTGGGTTATTGCTGCTGACAGTATCCCAGTCCTATGCTATCCCTCTTGGACTGGAGTCATCACCTGACAGCTGCTGTTTCAGCTTCTCCAAAATGAGAGTGCCCCCCAAGAAGATCGACTCCATCCAGAAGACTCACAGTGGATGCCCCCGACCAGCATTTGTGGTCAGAACTGTTGAGGGCAGAGTGATTTGCTTCCAGTCAAGTGTGCCGTGGGTACAGAAAGCCTTCAACCGGGTCAAGCAGACAGCAGCTGTGGCCACAAGTAGCGGCATTGAGGGTTCCAGTCAACCTTGATAACCTCCTCATCATGACTCAAGCCTCACAAGACTATATTGTCATCAACATGCAAGCAATGCATTCTAAGTGACATGTTTATCACTTAGAATGCAGCAATTACTATTTTGCGACATATGGAATTGGGGAAGGAGTGTTAGGATGTACACACCTTTTTGTTTATGTGAATACTGTGAGAATCCACTGCTTAAATAAAATGAGAACATTTGACTTAAACATAAGTCTCATCTTtaatataataatgtacagtTAGATAGAGAACAGATGATAAAAGGAAGAACCAAATAAAGCTGAAAACAGTGtacatataaaaaaaacaatacaaaaaactCCTAAAGTTAGGACTACCTTTTAAGGGGTTTCTAGGATAAGGGATTGGTTAAAGTACTATTTAAAAAAA
>TU28501
TCAGACTACAGAGGAACCAAAACAAAGACAGGTCAAACGCCAGACTTTCGACATCTCAAATCATCATGAAGACTACCTGCTTGGCTCTTGGGTTATTGCTGCTGACAGTATCCCAGTCCTATGCTATCCCTCTTGGACTGGAGTCATCACCTGACAGCTGCTGTTTCAGCTTCTCCAAAATGAGAGTGCCCCCCAAGAAGATCGACTCCATCCAGAAGACTCACAGTGGATGCCCCCGACCAGCATTTGTGGTCAGAACTGTTGAGGGCAGAGTGATTTGCTTCCAGTCAAGTGTGCCGTGGGTACAGAAAGCCTTCAACCGGGTCAAGCAGACAGCAGCTGTGGCCACAAGTAGCGGCATTGAGGGTTCCAGTCAACCTTGATAACCTCCTCATCATGACTCAAGCCTCACAAGACTATATTGTCATCAACATGCAAGCAATGCATTCTAAGTGACATGTTTATCACTTAGAATGCAGCAATTACTATTTTGCGACATATGGAATTGGGGAAGGAGTGTTAGGATGTACACACCTTTTTGTTTATGTGAATACTGTGAGAATCCACTGCTTAAATAAAATGAG

Function

symbol description
ccl8 Enables phospholipase activator activity and protein kinase activity. Involved in several processes, including antimicrobial humoral immune response mediated by antimicrobial peptide; cellular calcium ion homeostasis; and negative regulation by host of viral genome replication. Predicted to be active in extracellular space. Biomarker of COVID-19; chronic obstructive pulmonary disease; and rhinitis.

NR:

description
C-C motif chemokine 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594017.2 False 1295 mRNA 0.40 3 24552392 24554074
TU28501 True 584 TUCP 0.46 3 24552591 24553562

Neighbor

gene id symbol gene type direction distance location
LOC110513914 LOC106573648 coding downstream 141782 24408045 ~ 24410610 (-)
LOC110513605 LOC106573647 coding downstream 209236 24297698 ~ 24343156 (-)
LOC110513500 LOC106573646 coding downstream 264216 24233216 ~ 24288176 (-)
ccdc113 ccdc113 coding downstream 425764 24119224 ~ 24126628 (-)
LOC118948024 NA coding downstream 449468 24091604 ~ 24102924 (-)
ciapin1 LOC106573658 coding upstream 42011 24596085 ~ 24611535 (-)
gbrl2 gbrl2 coding upstream 143613 24697687 ~ 24711462 (-)
cdk10 cdk10 coding upstream 254498 24808572 ~ 24819243 (-)
znf276 znf276 coding upstream 299750 24853824 ~ 24865158 (-)
LOC110517792 LOC106573801 coding upstream 344837 24898911 ~ 24905644 (-)
G24762 NA non-coding downstream 14009 24538116 ~ 24538383 (-)
G24761 NA non-coding downstream 15565 24536627 ~ 24536827 (-)
G24759 NA non-coding downstream 17330 24534731 ~ 24535062 (-)
G24758 NA non-coding downstream 18123 24533892 ~ 24534269 (-)
G24757 NA non-coding downstream 18781 24533342 ~ 24533611 (-)
G24771 NA non-coding upstream 10932 24565006 ~ 24565215 (-)
G24775 NA non-coding upstream 16527 24570601 ~ 24571150 (-)
G24782 NA non-coding upstream 29421 24583495 ~ 24583814 (-)
G24718 NA non-coding upstream 112550 24666624 ~ 24667504 (-)
G24842 NA non-coding upstream 170199 24724273 ~ 24724537 (-)
G24542 NA other downstream 325902 24222907 ~ 24226490 (-)
LOC110511130 LOC106573631 other downstream 725901 23821656 ~ 23861029 (-)
G23394 NA other downstream 928043 23624026 ~ 23624349 (-)
G22350 LOC106573623 other downstream 1709087 22839845 ~ 22843305 (-)
G21993 NA other downstream 2170184 22381870 ~ 22382208 (-)
LOC118956210 NA other upstream 374274 24910984 ~ 24938701 (-)
LOC110518671 klhl36 other upstream 390834 24944908 ~ 24972465 (-)
G25115 zfpm1 other upstream 726518 25280592 ~ 25281030 (-)
G25117 zfpm1 other upstream 727530 25281604 ~ 25282018 (-)

Expression


Co-expression Network