znf276 (znf276)


Basic Information

Item Value
gene id znf276
gene name znf276
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24853824 ~ 24865158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595392.2
gtgaaatatctgtcttaTTGTTCTATCtgcgttattattattatttttgactACTTCCGGGTTTCAATAGAAACCGCTTCCTGTTCGTGCTTTACGATAGTCGATTTAACAGTAACACAATATGTATATTTTACTAAACCACCAACCAACTAAATGTTAAAACTACAAATGACTGCTAGAATTTGAGGCGAATTGTGTTCTCCTCATTGGAAGTCGCAGCTGCAGGTTTCAAATCAACTTTGGGTTTTAAACAGCTATACTGATAACAGCGCTCCCCATGTAAGACTCAAGTTACTTTGAAAGCTACTGCCACATTATATTGACAGGACTTGTCTTAAGGACTCTGTGTAATGAAGAAGCGAGGGAGACGAGCGCGGCTAACCGATGTGGCAGCAGGACAGAGAAGCCAGACCCAGTCAGTGGCTGGGGTCAAGAAACCTGCTGGGCGACGAGAAAGACCAAAGAATGCTGTGAAAACAACTCCACCATCAGTTGCATGTGATGGAGGTTTCGAGGATGTTGGTCCAAGTGACAGATCTGCAAGATTACAATTGAGCACAACCGTGTCAGTTGTGGAGATAGAAGGGGAGGAGCATCCAGAGAATAGATCAAAGAAATCAGGTATGGCCAGACTCAGCACTGCATTCTGTCGACTCTGTCATGGAAAGTTCTCACCTCGGAGGCTGCGGCATGCCTTTGACAAGTGGCCAGGAGAGCTGGCGGGGGTCCCTGACCAGACAGAGCCAGCCCAGTCGCCCCTGCTTTTCTACACAGACTTTCAGCGCCTAGTGGGAGTGCCACTGAACCGTGACCCACGTCTCTCACAATTTGTCTGCAAGAACTGCCACACAAAATTCTACAAGTGCCACACTATCCTGCTCACATTTCTGCAGAGGGTAAACCTCTTGCCATCTGTGAATGTGCCCACCAGAGACAGGAAAAGTTCAGAGTGCTCTCAATCAACAGTGCGTCCCAGCTTGTTGTCCATCCCAACCATCCCCTCCGATCCCAAGTGTCTCCACAGCCTGGTGTCCTGGGCCCACCACCATGCAGGAGACTGCCGCTCCTGCCCTGACCTGAAAGAAGTGCTGGAGGGGCAGTGCTGGGGCTCAGTAAGGGCTGTCTGGGAGTGTGTGGCTGGACATAGTTACATGATGGACACACAGACCAGAGCAAATCCTGGACACACTGGGTGTGATCCCCTACTGGAAGCTGAGGAGCAGCCCAGAGGGAACCGAAACCCTGTCAACACCACCATGCCCCTGGCCAGTCCAGGTGCTACCCCACAGACTCCGAGTTCCATCAACACTGATGCTACTACCACTAGTGTAGATGAATTTCTCTTTGCTAAGGCGACACCCTGCCCTGCACCTGCCCCACTCGTGGACAGGACAGGTGATATTGACCTATATGACCGGAACATGTCCAGTGAGGATGAGTTGGAAGATAAAAGGAAAAGTGGATCCTCTGATGAATTATTTGAACCATACCCAGAAAAGAAAGTTGCCTCCCCGAAGAAGAGAACCAGAAGAAAAGAAGCAAAAACTCCCAAGGAGCCTAAAGTCAGAAAGAAGCCAGGACCCAAGCCTGGCTGGAAGAAGCCAATCAAGTCAGAAAGAGAGGAGCTGCCCAATATCTACAAATGTCCATACCAAGGCTGCTCAGCTGTGTACCGAGGAGCAGACGGCATGAAGAAACACATTAAGGAACACCATGAAGAGATCCGTGAGCGACCCTGCCCTCACCCTGGCTGCAACAAGGTCTTCATGATTGACCGCTACCTGCAGCGACACGTGAAACTAATCCACACAGAGGTGAGGAACTACATCTGTGACCAGTGTGGTCAGACCTTCAAGCAGAGGAAGCACCTGTCTGTGCACCAGATGCGCCACTCAGGGGTCAAGCCACTACAGTGCGAAGTGTGTGGTTTCCAGTGCCGCCAGAGAGCATCGCTAAAGTACCACATGACTAAACACAAGGCAGAAGCTGATCTGGAATTTGCATGCAAACTGTGTGGAAAGCGCTTTGAGAAGGCCCACAACCTCAACGTCCACATGTCCATGGTGCATCCCCTCACACTAGCAGCTGCTGGAGGAAACATCGACAGCCCCTCCAACCCTGCTATCACCAACATAGAGACCATCACAGAGACTGGGGCACTGAACCCTTACAGCAGTTGACCGACCTGATTAGGCCTGTGACCCTCAAGGAGATATAACAACCAGAAAGTCTAACAGGGCTAGGgaactagattcagctgcgggacgATTTCTGTCAGAGAGCCAGTACATAATTATAACTTTGTACAACTGCAAATGGACCACAACTAAGGCAAAAAAATCACTTGCGGGATGTTTAGGCCTGCCAGCCGCCTGTTGCTGACCCCTGGTCTATAAGGAGTCTGGTGTAAAATGGTCATGGCTAATGTGACTAATTAACTTGAGGTAGAGAATAAGGTTAATAAGTTATACATGCACTATGTATAGATGACAGTACGTCTAAAATGAGCACAGCTAGCGGATCCTCTTTCAAAGCCAGGTAAGCTGTGTGATACTTATTTTAGTGTTGTACTGCTCTATAATTATATCCTTAAGGCAACATTATCATGTAGCTAGCCAAGTATATTCTTCATGGGAGAACAAAGATCAAGTTTTCAAACTCCCCCATACATACATTGTTCATGAAGGAAGGCAAGTTGTCATGATTCAAGGAAGCCACGGGTGTGCCTGTAGCCCCATatatttctctcacacacacacagtccattctgaaagtattcagaccccttctccacattttgttactttacagccttattctaaaatgtattaaataaatacaaatcctcaatctacacacaat
>TU28721
AGGACTTGTCTTAAGGACTCTGTGTAATGAAGAAGCGAGGGAGACGAGCGCGGCTAACCGATGTGGCAGCAGGACAGAGAAGCCAGACCCAGTCAGTGGCTGGGGTCAAGAAACCTGCTGGGCGACGAGAAAGACCAAAGAATGCTGTGAAAACAACTCCACCATCAGTTGCATGTGATGGAGGTTTCGAGGATGTTGGTCCAAGTGACAGATCTGCAAGATTACAATTGAGCACAACCGTGTCAGTTGTGGAGATAGAAGGGGAGGAGCATCCAGAGAATAGATCAAAGAAATCAGGTATGGCCAGACTCAGCACTGCATTCTGTCGACTCTGTCATGGAAAGTTCTCACCTCGGAGGCTGCGGCATGCCTTTGACAAGTGGCCAGGAGAGCTGGCGGGGGTCCCTGACCAGACAGAGCCAGCCCAGTCGCCCCTGCTTTTCTACACAGACTTTCAGCGCCTAGTGGGAGTGCCACTGAACCGTGACCCACGTCTCTCACAATTTGTCTGCAAGAACTGCCACACAAAATTCTACAAGTGCCACACTATCCTGCTCACATTTCTGCAGAGGGTAAACCTCTTGCCATCTGTGAATGTGCCCACCAGAGACAGG

Function

symbol description
znf276 Predicted to enable chromatin insulator sequence binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in kinetochore.

NR:

description
zinc finger protein 276

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595392.2 False 2862 mRNA 0.48 11 24853824 24865158
TU28721 True 614 TUCP 0.52 2 24864087 24864834

Neighbor

gene id symbol gene type direction distance location
cdk10 cdk10 coding downstream 34581 24808572 ~ 24819243 (-)
gbrl2 gbrl2 coding downstream 142362 24697687 ~ 24711462 (-)
ciapin1 LOC106573658 coding downstream 242289 24596085 ~ 24611535 (-)
LOC110514811 ccl8 coding downstream 299750 24552392 ~ 24554074 (-)
LOC110513914 LOC106573648 coding downstream 443214 24408045 ~ 24410610 (-)
LOC110517792 LOC106573801 coding upstream 33753 24898911 ~ 24905644 (-)
LOC118956210 NA coding upstream 45826 24910984 ~ 24938701 (-)
LOC110518671 klhl36 coding upstream 84676 24944908 ~ 24972465 (-)
LOC118956655 NA coding upstream 147023 25012181 ~ 25020388 (-)
LOC110519016 LOC106573687 coding upstream 179287 25044445 ~ 25083238 (-)
G24851 NA non-coding downstream 19235 24831392 ~ 24834589 (-)
G24896 NA non-coding downstream 31696 24821677 ~ 24822128 (-)
G24882 NA non-coding downstream 57476 24794487 ~ 24796348 (-)
G24871 NA non-coding downstream 78524 24771916 ~ 24775300 (-)
G24844 NA non-coding downstream 125042 24728551 ~ 24728782 (-)
G24940 NA non-coding upstream 31614 24896772 ~ 24896987 (-)
G24942 NA non-coding upstream 32452 24897610 ~ 24897827 (-)
G24972 NA non-coding upstream 53509 24918667 ~ 24962734 (-)
G24979 NA non-coding upstream 81522 24946680 ~ 24952340 (-)
G24542 NA other downstream 627334 24222907 ~ 24226490 (-)
LOC110511130 LOC106573631 other downstream 1027333 23821656 ~ 23861029 (-)
G23394 NA other downstream 1229475 23624026 ~ 23624349 (-)
G22350 LOC106573623 other downstream 2010519 22839845 ~ 22843305 (-)
G25115 zfpm1 other upstream 415434 25280592 ~ 25281030 (-)
G25117 zfpm1 other upstream 416446 25281604 ~ 25282018 (-)
LOC110520292 gnao1 other upstream 2770930 27631001 ~ 27781768 (-)
G24917 NA non-coding downstream 6541 24857246 ~ 24857546 (-)
G24915 NA non-coding downstream 8468 24855391 ~ 24855619 (-)

Expression


Co-expression Network