LOC110517792 (LOC106573801)


Basic Information

Item Value
gene id LOC110517792
gene name LOC106573801
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24898911 ~ 24905644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595703.2
CAAAATGCTCTCTATAGACTCAGACTGTCAGTCTCATTAAAactgttcatttgttcagtcctGTGGACCTATCCAGCATGTCAAACGCTGACAGAGTTGTGTTAGCTCTCGGTGGAGCAGGAACAGTGGGCTCTGGGATAGTTAAAGCACTCCTTGACAAAGGTTTCAAGGTGGCGGTTATCTCCAGAGACAACAGCAGGTTGGATAAACTCAGGGGGTTTGTTTCTCCCTCCACCAAAGACAACCTCACCACTCTAGTGGGGAATGTTGGTTCAGAGGAAGGGGCAGAGGTGGTCAAGCAGGCCCTTCTGAAGTCTGTTGGCAAGGTGACAGACATTGTGTCATCTCTGGGTTTCAGCTGGTGGCAGGGTGGACCTCCACATAGCCAGACTCTGAAAGAACTACACTGGGTGATTGAGACATTGCTGTTCAGCACCTTTGTATCATGGAAGGTCTTCTTTCCACTGGTGAGAGACGACCCCAACTGCACCTACACCTTTATCACAGGTGGTGCTGGGGAGAAGCTGTTGATGCCAGGTACAGGGTTCCTGACTGTTGGCGCTGCCAGCACCCTGGCATTTTGTCAGGTATTACGAGAGGAGTACCCAGAAGTACCCTGCAAACTCAACCAGGTAAAGATCAACACAGGTGTGGCCCCTCCAGAGCGTGTGGCTCCTGGTTACCTGAACCACCTGGACCTTGGTGAGGCTGTGGCCACATTGGTGGAGAGAAAGAACACCACCCACACCGTGTTCCCTGTCAACTGCCCGGCAGACTTAAAAACCGTCATTCTAGAGGGTAACCTTCAACGCTGCCCCTCTCTGCCATAAATCCCTGCAGATTATCAATACCATAGTGCTCGAGTCATTCCACATCCATTTTATTCTATAGTCAGTTCATGTGGTTTTCTTGGCATGTCAAATTATATATCTGTAAGGAAAATGTCAATCTTTATGTGACTTCATACCAGCTTCTGCACAGTCCTTCATTGTTCCAGTGTTCATACACTAATAACAAGAACATAATGCTCCAATGGAACTGTGCAAGTGCTTACAAGTGTAGATGATCTAGATGCACTCTGTTGGGAAAGTGCAGAATGACTCTAagatgtaagcatttcactgttagtctacacctgttgtttacgaagcatgtgacaaaatgTGAGGCAGTAAAAGGTGGCGGTACAGGGTCTTGGAACATTTGTGTCCCGTAGTGTGACTCTCTGTCCTGTTCAGACGCCCTCCCCTTTTATCTGGGTCCAATTATCTGGGATGGCACATCCTTAAACAAACAATGAAGGGGATGAGGAGGTGGGAGGTCCCCCGGAGGTAAAGAAATATCAGAGTGCATTGTTGTCTTTGTCTACTGTTCTGTTAATGGCATGCATGCTTTAGCAGCAATAATGTATATTTGTCATgctaataaaaaaaactgaattgtgtcgaggcaacaCTAACTAAC

Function

NR:

description
uncharacterized protein LOC109888634

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595703.2 True 1464 mRNA 0.47 6 24898911 24905644

Neighbor

gene id symbol gene type direction distance location
znf276 znf276 coding downstream 33753 24853824 ~ 24865158 (-)
cdk10 cdk10 coding downstream 79668 24808572 ~ 24819243 (-)
gbrl2 gbrl2 coding downstream 187449 24697687 ~ 24711462 (-)
ciapin1 LOC106573658 coding downstream 287376 24596085 ~ 24611535 (-)
LOC110514811 ccl8 coding downstream 344837 24552392 ~ 24554074 (-)
LOC118956210 NA coding upstream 5340 24910984 ~ 24938701 (-)
LOC110518671 klhl36 coding upstream 44190 24944908 ~ 24972465 (-)
LOC118956655 NA coding upstream 106537 25012181 ~ 25020388 (-)
LOC110519016 LOC106573687 coding upstream 138801 25044445 ~ 25083238 (-)
LOC110519226 LOC106573688 coding upstream 183652 25089296 ~ 25112992 (-)
G24942 NA non-coding downstream 1084 24897610 ~ 24897827 (-)
G24940 NA non-coding downstream 1924 24896772 ~ 24896987 (-)
G24917 NA non-coding downstream 41365 24857246 ~ 24857546 (-)
G24915 NA non-coding downstream 43292 24855391 ~ 24855619 (-)
G24851 NA non-coding downstream 64322 24831392 ~ 24834589 (-)
G24972 NA non-coding upstream 13023 24918667 ~ 24962734 (-)
G24979 NA non-coding upstream 41036 24946680 ~ 24952340 (-)
G24985 NA non-coding upstream 54372 24960016 ~ 24965492 (-)
G24542 NA other downstream 672421 24222907 ~ 24226490 (-)
LOC110511130 LOC106573631 other downstream 1072420 23821656 ~ 23861029 (-)
G23394 NA other downstream 1274562 23624026 ~ 23624349 (-)
G25115 zfpm1 other upstream 374948 25280592 ~ 25281030 (-)
G25117 zfpm1 other upstream 375960 25281604 ~ 25282018 (-)
LOC110520292 gnao1 other upstream 2730444 27631001 ~ 27781768 (-)

Expression


Co-expression Network