LOC118956655


Basic Information

Item Value
gene id LOC118956655
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25012181 ~ 25020388 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005046131.1
aatgtaacaaaatgtggaaaaaagaaggggtctgaatactttccgaatgcactgtacatttcaaCCAAGAGCAACAGCTCTAACAGCTATGTGGTCTACTTTCCAAACCACAACATTAAACAACCAATCTTTTTCTTTTTTCTGTTAACCCGGCGGTCTCTTAGTGTGAGGGAGGGAAAGTTACTTGCACCTCTACGTTTTTAGGCTTCATGGTATGGTGGTTGTGTACAAATGGAAGCAAACTTTGTGCAGGAATACTGAGGGGTAATATTATATGAGTGTGTCAGACCTGATTCCATGTAGCACTCATTATTTACATTGCAAATGAGCAGCAGGCGCAGTGGATGGATGGACCCAGAGAGAGAAGTGAAGTATTAACCCAGAACTATTTCAATATCTTTCCTGAGGAAACCTTTGCTCTCAACCGGTGCTGTCCCCTTAAAGGGCTATCCACAAAATGTACACAAATTAGTTTCCTGATACACCACAAGAacatagtcaataacacacacataaATTATAAGCATAACTGATGGTCCACTACTTCCTTCTGTAAAAGATGTATCCAGTGTAGCGTAAACCAAATGTGAAACCAATCAACACTGTGGCACTCCCCAGGTCTTGATGTACCATATGAGAGACAATGCAATACAGTCCTCTGACCCTGGCTATGAAGGGTCTTCACTGCAATCTCCATCGTGGCCAGCATCAAGGATGCTCCTCTTGCCTCCTGTCTCTACCTTCAACAGAACACCCCAACCTGACTGTCATCCACTAAGTATATGTGggaGAGTCCAGGGTGTCCAGAGAGTCATGGGTGAAGTCCTCCTCAGCAGAGAGCCGAGGGCTGCTATAGCTGGTGCAGTGAGGCTGTGCTCGGGTATGCCCACTGCCAAAATCGCTGTCCAGCCACAGGCCTAAGTAGCCATGCTGACCACCCGTGCTCTGAAACCCACACAGACAAATTACATAAGTGACATTCCTTGGGTCAAGAATAACAACAGTTGAATTTTGCTCAATTTGTAAATTGGGAGGTGCCGGAACAAAAAGTGAGCCCTATGGGGCTCTTGAAAAAGAAAATCACCTTTTATAATAAAGAATTGCATGCATTATCATCGCTTTTGTGTACTGGCATAGAGCAGTAAAGTAGAGGCGCTTGCAGAAGTTGCCCATAGGAAAACACTTTTGTAGCCTGGGTTCCGGAAAAAATGTGGCATCAATTCTACATACTTTTATTTGACTGGAGACTTTAGCAGAATACGTTTTAATACCTCTGAAATGAtcgaaatgacaggctactttgacagtGAGATCAATAAAACGACcatgtcttgaatccatcaatagcataggtgtgtggagacatattgtacaatatgaggagggatttttttcactgactcacccaaggATGCGCAACTCACTCACCGGTGAAGGCCGAAGTGCTACTGCCAAAACCTTGTCGAtctctctcttgttttacttttactttacttttttttactttagtttatttagcaaatattttcttaactcaattttttaaactgcattgttggttaagggct

Function

NR:

description
PREDICTED: TLD domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005046131.1 True 1568 mRNA 0.42 3 25012181 25020388

Neighbor

gene id symbol gene type direction distance location
LOC110518671 klhl36 coding downstream 58867 24944908 ~ 24972465 (-)
LOC118956210 NA coding downstream 99486 24910984 ~ 24938701 (-)
LOC110517792 LOC106573801 coding downstream 106537 24898911 ~ 24905644 (-)
znf276 znf276 coding downstream 147023 24853824 ~ 24865158 (-)
cdk10 cdk10 coding downstream 192938 24808572 ~ 24819243 (-)
LOC110519016 LOC106573687 coding upstream 24057 25044445 ~ 25083238 (-)
LOC110519226 LOC106573688 coding upstream 68908 25089296 ~ 25112992 (-)
kiaa0513 kiaa0513 coding upstream 134337 25154725 ~ 25172586 (-)
LOC110519951 LOC106573692 coding upstream 352442 25372830 ~ 25381869 (-)
LOC118959932 chtf8 coding upstream 439354 25459742 ~ 25463093 (-)
G24959 NA non-coding downstream 13171 24998546 ~ 24999010 (-)
G24985 NA non-coding downstream 46689 24960016 ~ 24965492 (-)
G24972 NA non-coding downstream 49447 24918667 ~ 24962734 (-)
G24979 NA non-coding downstream 59841 24946680 ~ 24952340 (-)
G24945 NA non-coding upstream 21172 25041560 ~ 25042769 (-)
G24948 NA non-coding upstream 22515 25042903 ~ 25044176 (-)
G25011 NA non-coding upstream 45502 25065890 ~ 25066926 (-)
G24952 NA non-coding upstream 65686 25086074 ~ 25087355 (-)
G24954 NA non-coding upstream 68274 25088662 ~ 25089255 (-)
LOC110514811 ccl8 other downstream 458619 24552392 ~ 24554074 (-)
G24542 NA other downstream 785691 24222907 ~ 24226490 (-)
G25115 zfpm1 other upstream 260204 25280592 ~ 25281030 (-)
G25117 zfpm1 other upstream 261216 25281604 ~ 25282018 (-)
LOC110520292 gnao1 other upstream 2615700 27631001 ~ 27781768 (-)
G28870 NA other upstream 3037055 28057443 ~ 28066305 (-)
G29355 NA other upstream 3683499 28703887 ~ 28704356 (-)

Expression


Co-expression Network