LOC110520053


Basic Information

Item Value
gene id LOC110520053
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25181837 ~ 25184028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472933.2
aggactgtttcggttttcacggttgttcatgttaagtgtctcttattaaagaaccatgaacttcaaccacgctgcgttttgggcCGCCTcaccttcccaggaagaaagccgtgacaATATCCATTGACATCCACTGTAAAAAGTGCTCATGCACATTTGCATTGCATAGCGGTGGGAGCAATGTGGTCGCGGCAGCCAATCAGAAGAGGTGGAGGTGCATGTCATTCCAGGTTAAAGTACAAAGGTTAAACCATCTGAGATGTAAGGTTGGTGTGTGCTGTTCCCATGGCTCTGCAGGCTGTTGGGCAGCCAGTCGCAGAGGACCCACAGGTGGATAGGGTATCTTCAAATACTGCTACACCCTCTGCTCTATGCCTTTCACAATCATATACTTGCCCTGAACTTTCCTATTCTTCAGAGAGACCACTGGTCCAGTCGCTGCTGGAAGCACACTAACCACAAGGGGCCTTAATCATGTAACCTGATTAAAGTCTGAGCACATAATGATGTCGTTCTTCATAGTTTCTCTATTTAAAGGAGCCAACTAACTGTTGGAGTAAAACATCGGTACAGGATGTATGCTGCAACGTATGATGTTCCTGTAGTACTTTCCCCATTATTATTGtctagttaaattaaataaataatcttGGTAGCTAAAGTAATCAAAATATGCATGTTATGTAATGTACcagttttttgtattttttttctttagtacaaaataatgaaataagGATTTCTTACCCATTGTGCCCAGCTAAGCACCTAAAAATACTATAGTATGGTACACTCTAAGTGTTGTTTACATGGCTGTGTCTTtggcaagacagacagacactcagttTTCATTCAAGCAAATACCACTCCCTACACCAAGTACCTGCCCCTgaatgggtacacacacacattgatttaACTTCTGTTTCACCAGACCTCGCCCTAAATGTCACGTCCTGATCATAGAGAGCCCTTAATTTCTATGttagagtaggtcagggtgtgacctattattttctatgtggggttctagtttagttttcctatgttggtgtttggtatgattcccaattagaggcagctggctatcgttgtctctaattggggatcatatttaagtagcatttttttcAACCTGTGTTTTATGGGATGTTGTTTGAGTTAGTGTATGTTACACGTCTTAGTTacggtttgttgtttgtttcatTCTTTCTTTGTTTTGTGAGTTTCTAATAAATAATATGTGGAAACCATATCGCGCTGCAGCTTGGTCCGATAATTATtccaacgaacgtgacagaatatcccatcaaaccaggaccaagcagcgtgcccaaagagggaaggatttctggacatgggaagAAGTGATGGGTAGATGCGAAACCCTTCCTTGGCAACAGACGGAAGGAGATTGTGGAGGACAGCGACGACGACAGGGTTCGCGGCTACAGAAAGCCCAAGGACAACCCCAAGTTTTTTGGGGGGCACATGGAGCTGGTGGCTGAGCAGAGGGAAGAGCCAGAGACTGTCAGGGAGGCAATGGCAAAGTTGGGAGAGTGAGAGATGAAAGAGATGTTGTACAAGTGTGTTCTGTTCAACATCCGACCAGAGGATCCGGTTAGCAGTCTGGTGCAACCTGTGCCGGTTCCACGCTTCTGGCCTCAAGTGCACCTCTCCAGTCCGGTACGTCATGTGTCTCCTCCTCGCACGGAGagtgcgtgtccccagtccggtacgtcctatGCCTGCTCCTCGCTCTTGCCATGCGAAGTGTGTTAAAGTTCCGATACAATTGATTCCggcacagcccagtacgtcctgtgcccaCTCCTCGCACCCTCCCTCAAGTGTGCCT
>XR_005040503.1
aggactgtttcggttttcacggttgttcatgttaagtgtctcttattaaagaaccatgaacttcaaccacgctgcgttttgggcCGCCTcaccttcccaggaagaaagccgtgacaATATCCATTGACATCCACTGTAAAAAGTGGTACGGCACTGTTGTTCATCTGAAGTGTTTTTTCTGATTGGAATGATCCAAAATTACACTTTGCTCATGCACATTTGCATTGCATAGCGGTGGGAGCAATGTGGTCGCGGCAGCCAATCAGAAGAGGTGGAGGTGCATGTCATTCCAGGTTAAAGTACAAAGGTTAAACCATCTGAGATGTAAGGTTGGTGTGTGCTGTTCCCATGGCTCTGCAGGCTGTTGGGCAGCCAGTCGCAGAGGACCCACAGGTGGATAGGGTATCTTCAAATACTGCTACACCCTCTGCTCTATGCCTTTCACAATCATATACTTGCCCTGAACTTTCCTATTCTTCAGAGAGACCACTGGTCCAGTCGCTGCTGGAAGCACACTAACCACAAGGGGCCTTAATCATGTAACCTGATTAAAGTCTGAGCACATAATGATGTCGTTCTTCATAGTTTCTCTATTTAAAGGAGCCAACTAACTGTTGGAGTAAAACATCGGTACAGGATGTATGCTGCAACGTATGATGTTCCTGTAGTACTTTCCCCATTATTATTGtctagttaaattaaataaataatcttGGTAGCTAAAGTAATCAAAATATGCATGTTATGTAATGTACcagttttttgtattttttttctttagtacaaaataatgaaataagGATTTCTTACCCATTGTGCCCAGCTAAGCACCTAAAAATACTATAGTATGGTACACTCTAAGTGTTGTTTACATGGCTGTGTCTTtggcaagacagacagacactcagttTTCATTCAAGCAAATACCACTCCCTACACCAAGTACCTGCCCCTgaatgggtacacacacacattgatttaACTTCTGTTTCACCAGACCTCGCCCTAAATGTCACGTCCTGATCATAGAGAGCCCTTAATTTCTATGttagagtaggtcagggtgtgacctattattttctatgtggggttctagtttagttttcctatgttggtgtttggtatgattcccaattagaggcagctggctatcgttgtctctaattggggatcatatttaagtagcatttttttcAACCTGTGTTTTATGGGATGTTGTTTGAGTTAGTGTATGTTACACGTCTTAGTTacggtttgttgtttgtttcatTCTTTCTTTGTTTTGTGAGTTTCTAATAAATAATATGTGGAAACCATATCGCGCTGCAGCTTGGTCCGATAATTATtccaacgaacgtgacagaatatcccatcaaaccaggaccaagcagcgtgcccaaagagggaaggatttctggacatgggaagAAGTGATGGGTAGATGCGAAACCCTTCCTTGGCAACAGACGGAAGGAGATTGTGGAGGACAGCGACGACGACAGGGTTCGCGGCTACAGAAAGCCCAAGGACAACCCCAAGTTTTTTGGGGGGCACATGGAGCTGGTGGCTGAGCAGAGGGAAGAGCCAGAGACTGTCAGGGAGGCAATGGCAAAGTTGGGAGAGTGAGAGATGAAAGAGATGTTGTACAAGTGTGTTCTGTTCAACATCCGACCAGAGGATCCGGTTAGCAGTCTGGTGCAACCTGTGCCGGTTCCACGCTTCTGGCCTCAAGTGCACCTCTCCAGTCCGGTACGTCATGTGTCTCCTCCTCGCACGGAGagtgcgtgtccccagtccggtacgtcctatGCCTGCTCCTCGCTCTTGCCATGCGAAGTGTGTTAAAGTTCCGATACAATTGATTCCggcacagcccagtacgtcctgtgcccaCTCCTCGCACCCTCCCTCAAGTGTGCCT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472933.2 False 1858 mRNA 0.45 3 25181837 25184028
XR_005040503.1 True 1921 mRNA 0.45 3 25181837 25184028

Neighbor

gene id symbol gene type direction distance location
LOC110519532 LOC106573802 coding upstream 43580 25136452 ~ 25138257 (+)
plcg2 plcg2 coding upstream 141625 25019010 ~ 25040212 (+)
cotl1 cotl1 coding upstream 209371 24966574 ~ 24972466 (+)
zgc:56622 LOC106573681 coding upstream 232884 24941636 ~ 24948953 (+)
LOC118936285 LOC106573680 coding upstream 243128 24921155 ~ 24938709 (+)
LOC110520087 LOC106573690 coding downstream 2121 25186149 ~ 25188147 (+)
LOC110519941 zfpm1 coding downstream 5481 25189509 ~ 25288488 (+)
zc3h18 LOC106573693 coding downstream 198493 25382521 ~ 25409953 (+)
il17c1 il17c1 coding downstream 227704 25411732 ~ 25413325 (+)
LOC110519986 LOC106573695 coding downstream 264828 25448856 ~ 25458271 (+)
G24450 NA non-coding upstream 3961 25177653 ~ 25177876 (+)
G24364 NA non-coding upstream 24481 25154729 ~ 25157356 (+)
G24376 NA non-coding upstream 40592 25138337 ~ 25141245 (+)
G24440 NA non-coding upstream 61183 25120299 ~ 25120654 (+)
G24439 NA non-coding upstream 61847 25119725 ~ 25119990 (+)
G24496 NA non-coding downstream 95627 25279655 ~ 25279874 (+)
G24497 NA non-coding downstream 99168 25283196 ~ 25283397 (+)
G25126 NA non-coding downstream 109464 25293492 ~ 25293933 (+)
G25149 NA non-coding downstream 127979 25312007 ~ 25312222 (+)
G24365 kiaa0513 other upstream 13509 25167817 ~ 25168328 (+)
G24435 NA other upstream 69976 25111210 ~ 25111861 (+)
G24307 NA other upstream 324586 24856944 ~ 24857251 (+)
G24295 NA other upstream 341375 24839985 ~ 24840462 (+)
G24123 NA other upstream 629402 24550525 ~ 24552435 (+)
LOC110520022 LOC106573700 other downstream 528543 25712423 ~ 25732202 (+)
G26858 NA other downstream 1471269 26655297 ~ 26655598 (+)
si:ch211-216l23.2 LOC106573703 other downstream 1496263 26680211 ~ 26696018 (+)
G27553 NA other downstream 2129794 27257563 ~ 27316517 (+)

Expression


Co-expression Network