LOC110519951 (LOC106573692)


Basic Information

Item Value
gene id LOC110519951
gene name LOC106573692
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25372830 ~ 25381869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596861.2
GACTGTACATTCTCTTAGACAACAGAAACGAGTCTTAACTGCACAGTGTTCAAGGTGAATAACAGAGCTGAAAATAATTTGAACAAACGAGAAATTGGGGAAGTGTGTCTATGCGCATCAATTAGCAAGAATGGATATAAGGCGGATCAATGGCATTCTCATTTGTTTAAGGGCTAGAGGCAGAGGAAAATTCGCTCCAACATGTTGATTTGATTAATTAAATCAAATTATAACCCTGCAAAATAATGAAATAGGCTGAAGACAGACGGAACATAGTATACCATTAAAAGGGTATCATTACCAACAAATACAGAACACATGTAGGGACATTTATTCCTACATTCCCACGCTGAcatatcacacactcacacatgcaagTTCCtatgtccttccctctctccatcttactCACATAGAAACAAACTCATCACCTGCAAACATGACAGAAAATGTGAGCTCAAGGATGGACACCCCAACCAACATTTCCTTGGTGGGACCAGGGGACCCCATATCCCAGTCTCTGGAGTACAAGACTGTGGCAGTTTTTCTGGTTCTGCTAGTCTGTGGACTTGGCATTGTGGGTAATATCATGGTGGTTCTGGTGGTCCTCACCACGAGACACATGCGTACGCCCACTAACTGCTACCTGGTCAGCCTGGCCATAGCGGACCTGACCGTGCTGGTTGCCGCTGGTCTGCCCAATGTGTCAGACAGCCTGACGGGTACCTGGGTGTTTGGGCATGCTGGCTGCCTTGGCATCACCTACCTCCAGTACCTTGGCATCAATGTGTCCTCCTGCTCTATAACAGCCTTTACTGTGGAGAGGTACATTGCTATCTGCCACCCAATGAGGGCCCAGACAGTGTGCACGGTGTCCCGGGCCAAGCGGATCATAGCAGGGGTGTGGGTGTTCACCTGTGTCTACTGCATGCTGTGGTTCTTCCTGGTGGACATCCAGGTAATGAAGAGCGGCAGCATCCAGTGTGGCTACAAGGTGTCCCGTGACCTCTACCTCCCCATATACCTCATTGACTTTGCCATCTTCTATGTGATCCCTCTGCTCCTGGCCATCGTCCTGTACGGCCTCATCGCCCGCATCCTGTACCTCAATCCACTCCCCAACCGGCCCGATGTGGGCACGGTCTCCTCTGGTGCCACCATGCTCCGCAGGAGCTGCAAGGAACCAGCAGATGGAGGGAAAGGGGGTCGTCAGGGCCGCCCGAAGAGCACGCTCTCCTCCAGGAAACAGGTCACtaagatgctctcagtggtggtGATCCTGTTCGCCTTACTGTGGATGCCCTACCGGACCTTAGTCCTTATTAACTCCTTCATTGCCACACCCTACCTGGACGCATGGTTTGTTCTGTTCTGTCGGATCTGTATGTATGCCAACAGCGCCATCAACCCCGTAGTGTACAACCTGATGTCTCAGAAGTTCCGTTCAGCGTTCCGCGGGCTCTACAGATGCCAGAGCCAGGAGGCCCACCACCGCACCCTCTCCATGATCCAGAGCGGCTACAGCATGGCCAGGGACCCACGCACCCCACAGCAGACCAGCAACGGGACCAAACAGGGGGCCAGGAGAGTGACCTGCACTGACACAGTGACAGAGTGGCAGAGCAAAGACACCTCCCCAGCCAAAGAGAAGAAGGATCTGGATCACCTGAAGGAAGATAGAAAAGACACAAGCTGTGGTGAGATCAACTCAACACCTCAACAAACTGAGATCAACTCCACATCTGGGCAAACTGAGATCATATTCACGCCTAGGCAAAATGAGATCAAATCTACACTTGGGCTGAATGTGATCAAATCCACACCTGGGCAAAATCAGATAAAATCCACACCTGGGCAGAATGAGATCAAGTCCACAACTGGGCAAAATGAAATCAAGTCCACACCTGGGCCAACTGAGATGACTGAGGCAGAAATGAATCACACAGTGCTGTAGATAAAACAAGCCTGTTTTCACATGAGGAAGTGAGTATTAGTCATTCACCAATTCAAACACATTTTGGTAACATATCAAGCCCTTGATGGGTATTGCAGGATGCATTGGAATGGAAAAGTCATCCATCTCATTACCCTTGAATAAGCACTATCACCTATTGTAGAATGAAACGATTCTGGCCAATAATACTATATACATTTAGGATTCTGGATTTTTGGCTGTTGCATATTCCCAAAAATCATCATCAACATGTGACAGAGTGGTATGGACCGCTTCCAGGGATCACTGCAGGTCTCCTCTGCTTTTGTTAGTGAATTTCATTAGGTACACTTCTGTTGTTAAGCTCAGAGGGAAAGAGGAATAACATGCTgttcagagagagcgagagagagagagcactaacTGCCTTTAAGGGATgccacaaatacatttttagaagTGCTTTTAGGTATGATGCTGCTTACAGAGCTCTTCTCATCATTCAGTTTCAAAGCCCTAAAAATCAGATGTGAAATAGTTATGATCTGTCCTCCCTGCAGTCCAGGGACAACACTGTAAAGCACTGCCATTTGTTCTGCATAAAAGCCCCTGCTCAGAGCAcaggacatgttaatatagttgTATCTCCACTTTGCCAAGAGATACTGTACATGTTAATGTTCTGGGCCACATGTAAGACAGTTGGAAGGACTGGGGTAACCGTGGTTTGAGAGTACACAGGTTAAATGCCCATAGATGTTAAATGTTTGGGTTAATATCCGGATAAACAGCCGTCGTAAATGATCCCTTAACAATGTTTGGGGAAGTGGGAATAttaggatgctggccttcaaagTGGTTCAGCCGACCAAGCTCTGCGAAAATGAGTTGAAGTTGCTGCATTATTGAAAGAGTGGCTCATCCGCTGTCTACACATCCACACCTCATTATGAGTCATGGTCCCAGCCCAACCTAGGCTCAGTCTCTTTCAAATCACACATCCTGAATTAAAGTGGATTGTGTGCACATTCTTTATCCTGTAATGAGAATACCACTCTAGTTTCAGTCATTGCTAGTGAGTAGCCATCAAGACATGTATAGATGAGTAAGGTTTGCAGCATTTTAATACAGATAGTTTCAGTGCCACAGATTTAGTCATCATCCGGTTCATGTCGTACACGTATAGGTCCCATGGCCATTCTACAGTATGTGATCTCCAATCCCAGTGGTCGGCAGACTATTACGTTTTATTACACAAATATGGACACATTTCAAATCTCTAATAATAGGTTTTTTTTGTTGAGAAATAAGTGCATCATATTGAGACTCTAGTGGATCCTTTGATATGAATAGAAATGCCTTTTAACGCGATCCAACAATTTCATTCCTGAATGTCTTTCCAAAAGTATGTTTTGTTCAGTCGCTGTCACTTGGTCTCTTTTCAATGCTTTTTTCAAAGTCttggttctccctctctgtcttcccagTTGACCTTGTCTTTTATTCGTGCCATCTAAAACCTGTGCCTGAAAGAAAAGCACTGAACATTTCCTACGTCATCGAGATGGGTTGAGAATACTTCTGTCATTTTGCCCAAAAACAGTTGAAACCTAATTCATGTTTTGCTTTGTATTTGAAAAGCAGTACATCATTCTGTTTGTTAAGGATAATTACAACATTCTCAAACATAACTGCCGAAGCGACAAATGTGGCATAACAAAACACTCTTTATCTAGTTGTTTATACA
>TU29092
TGCTGGTCTGCAAGACTGTACATTCTCTTAGACAACAGAAACGAGTCTTAACTGCACAGTGTTCAAGGTGAATAACAGAGCTGAAAATAATTTGAACAAACGAGAAATTGGGGAAGTGTGTCTATGCGCATCAATTAGCAAGAATGGATATAAGGCGGATCAATGGCATTCTCATTTGTTTAAGGGCTAGAGGCAGAGGAAAATTCGCTCCAACATGTTGATTTGATTAATTAAATCAAATTATAACCCTGCAAAATAATGAAATAGGCTGAAGACAGACGGAACATAGTATACCATTAAAAGGGTATCATTACCAACAAATACAGAACACATGTAGGGACATTTATTCCTACATTCCCACGCTGAcatatcacacactcacacatgcaagTTCCtatgtccttccctctctccatcttactCACATAGAAACAAACTCATCACCTGCAAACATGACAGAAAATGTGAGCTCAAGGATGGACACCCCAACCAACATTTCCTTGGTGGGACCAGGGGACCCCATATCCCAGTCTCTGGAGTACAAGACTGTGGCAGTTTTTCTGGTTCTGCTAGTCTGTGGACTTGGCATTGTGGGTAATATCATGGTGGTTCTGGTGGTCCTCACCACGAGACACATGCGTACGCCC
>TU29103
TGCTGGTCTGCAAGACTGTACATTCTCTTAGACAACAGAAACGAGTCTTAACTGCACAGTGTTCAAGGTGAATAACAGAGCTGAAAATAATTTGAACAAACGAGAAATTGGGGAAGTGTGTCTATGCGCATCAATTAGCAAGAATGGATATAAGGCGGATCAATGGCATTCTCATTTGTTTAAGGGCTAGAGGCAGAGGAAAATTCGCTCCAACATGTTGATTTGATTAATTAAATCAAATTATAACCCTGCAAAATAATGAAATAGGCTGAAGACAGACGGAACATAGTATACCATTAAAAGGGTATCATTACCAACAAATACAGAACACATGTAGGGACATTTATTCCTACATTCCCACGCTGAcatatcacacactcacacatgcaagTTCCtatgtccttccctctctccatcttactCACATAGAAACAAACTCATCACCTGCAAACATGACAGAAAATGTGAGCTCAAGGATGGACACCCCAACC

Function

NR:

description
PREDICTED: thyrotropin-releasing hormone receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596861.2 False 3680 mRNA 0.46 4 25372830 25381856
TU29092 False 647 lncRNA 0.48 2 25379074 25381869
TU29103 True 491 lncRNA 0.47 2 25379230 25381869

Neighbor

gene id symbol gene type direction distance location
kiaa0513 kiaa0513 coding downstream 200244 25154725 ~ 25172586 (-)
LOC110519226 LOC106573688 coding downstream 260599 25089296 ~ 25112992 (-)
LOC110519016 LOC106573687 coding downstream 289592 25044445 ~ 25083238 (-)
LOC118956655 NA coding downstream 352442 25012181 ~ 25020388 (-)
LOC110518671 klhl36 coding downstream 419516 24944908 ~ 24972465 (-)
LOC118959932 chtf8 coding upstream 77886 25459742 ~ 25463093 (-)
LOC110520001 wfdc1 coding upstream 91680 25473536 ~ 25485212 (-)
LOC110520008 kcng4 coding upstream 155259 25537115 ~ 25566593 (-)
LOC110520015 LOC106573699 coding upstream 298053 25679909 ~ 25712438 (-)
LOC118966628 NA coding upstream 351099 25732955 ~ 25747219 (-)
G25236 NA non-coding downstream 6257 25366126 ~ 25366573 (-)
G25181 NA non-coding downstream 27817 25344630 ~ 25345013 (-)
G25171 NA non-coding downstream 37321 25335289 ~ 25335509 (-)
G25163 NA non-coding downstream 44170 25328012 ~ 25328660 (-)
G25161 NA non-coding downstream 45862 25326687 ~ 25326968 (-)
G25263 NA non-coding upstream 32114 25413970 ~ 25414244 (-)
G25266 NA non-coding upstream 34715 25416571 ~ 25416858 (-)
G25270 NA non-coding upstream 37380 25419236 ~ 25419436 (-)
G25273 NA non-coding upstream 38821 25420677 ~ 25420962 (-)
G25278 NA non-coding upstream 43540 25425396 ~ 25425606 (-)
G25117 zfpm1 other downstream 90812 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 91800 25280592 ~ 25281030 (-)
LOC118956210 NA other downstream 434129 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 507996 24853824 ~ 24865158 (-)
LOC110520292 gnao1 other upstream 2254232 27631001 ~ 27781768 (-)
G28870 NA other upstream 2675587 28057443 ~ 28066305 (-)
G29355 NA other upstream 3322031 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 3898420 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 5750037 31131151 ~ 31132900 (-)

Expression


Co-expression Network