LOC118959932 (chtf8)


Basic Information

Item Value
gene id LOC118959932
gene name chtf8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25459742 ~ 25463093 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118959932
ATGAAGGTGGTACCTTCGTGGCGGGAAAAACATGAAAACAAACaggacttttttttattttttattttattaacaacaaatcaatacagaagTGTTTCAGTTACCTTTCTGCAAGCAGCACAATGGTTCAAATTGTTAAAACTTCAAGTGTGGATGGACCTGGTCCTACTGAGTGGCTGCTGGTTGAACTCCAGGGGGAAATGATGTCCAGGCAGAACTCTGGATTGGCTGGGAACCTGGTGGGAGATCTGCTCTACACCAAAAAGGGTGTACCTGTGCTCATTGTGGGACTCCACATCCTCTATGGGAAGGTGGTCAAACTGGAGAAGCCCTTCGCTGTCCTGATGAAACAACTCTGGCCTCCCACAGGGGGAGAAGGTTCCCATGGAAATCAACCAGCAGAACCCCACCACCTACTCTATTTCCTCCCTCATCAAGAAGAAGCTCATCTTCAATACTCGCCCAAAGCCCATCATCACTAATGTGCCCAAGAAACTGTAGTGAAGTGCTTGGTCATATGCATTATAGGCCTCACTGTCGCAAAACACTTTTAACTGGAAAAAAATGGACAAGTTCAGATAGTCCCTgttgcagtctgttttcttccgtttTGTGCCTAACGACCTTGACCCTGGTCACCTCTATGGGAGCAAAGGACATGCCGCACTCTTAATGACGCCAGACCCACAAGTATGGAGCACCCATTGCAAGACTGTACTTGGGACACACTCCTCTGGCTTGAGGTTATGGGACATCTGAAACTAGGCTGTGTGCATATTTGTTTTGTTATGTCAGTGGTTACACTGCTGGAATTTGCTTAACACTGTGGTGTATTATTAAAATATCTTTGTTATTGCACTTATCAGATGACAGGATTTAGTAATGTCTTGACATGACATTTGTACAGTGATTACTTTCAGATGGGGGGGGGAAGAAATCACCACAACAGTCGAATgagaatatttttttattcagataaaaaatacattttttttcaacTGCTGTACAAGTCGGAAAAATAACTGTTTTGATTTGAAATTCAAAACCTTTTCCAACAACATGTCTTGCCTTCTATATTTAAACATAATTAAATATATAGGTGGCTACAATACTTTATTTTCAGCTATTACATACCaataaaatgtgtattttatgtTGCAATAGCCATATGCTGGTGAATGATTCTGATTTTTTTTGTACCCTACTACTGTATTAGAAATACTATCTTGGTTTACTACTTTTACATGACAGTTATAACTAACTGCCTGTTCTAAATCTACATGAAGCATCATCCCTAAATCATAATAGGGATATTGGTGATATGAGTGATGTCTCGTCCATGAATCTACAAAAAGACAAGTGTGGCAATGTTGAACACTAGAGACCAAACTACACTGAATAACAGATCATTGTGCTAACTACATCACATTGTAAAAATAATGTAAAACGCTATTGTTTCAGGAAATGTACAAATCCCATAGTTCCTTTTAAATATAGGTCTATTCTTAAACCCATAATTCTTGTACATCTTCAAAATATCTTTGAATATATACAATACACAAAATATATTACTTTGCAATATACTGTGAAACATTGCCTTTATGTAACATTGAATGTTGTATGAGCTGAGATACCATGGTTTGTTCGATAGGCTCAACAGTTGTTCTGCGGCATTGAGACACCTTAGAAAAGTCTGGCATAGATTTTCAGTCACAGACGTATTGAATAGTTACATAATTATATTCAAAACAATTATAAGACTGGGTTTTTTCATGTCAGATATGCTTACATCATATGGCTAGACATCTACAGTCACTCAGCATTATGAGACCGATTGATTTGTTGTCAAACAGTGGCAGGCTGTATCAAGGAAATCAAAAATTGCTGACAATATTGTAGACTGAAAGCAGATGTTCAGCCTGATAGATAGGCTATAACAAAGATTGTATTTGAC

Function

symbol description
chtf8 Predicted to act upstream of or within mitotic sister chromatid cohesion. Predicted to be part of Ctf18 RFC-like complex. Orthologous to human CHTF8 (chromosome transmission fidelity factor 8).

NR:

description
PREDICTED: chromosome transmission fidelity protein 8 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118959932 True 1954 mRNA 0.38 4 25459742 25463093

Neighbor

gene id symbol gene type direction distance location
LOC110519951 LOC106573692 coding downstream 77886 25372830 ~ 25381869 (-)
kiaa0513 kiaa0513 coding downstream 287156 25154725 ~ 25172586 (-)
LOC110519226 LOC106573688 coding downstream 347511 25089296 ~ 25112992 (-)
LOC110519016 LOC106573687 coding downstream 376504 25044445 ~ 25083238 (-)
LOC118956655 NA coding downstream 439354 25012181 ~ 25020388 (-)
LOC110520001 wfdc1 coding upstream 10443 25473536 ~ 25485212 (-)
LOC110520008 kcng4 coding upstream 74022 25537115 ~ 25566593 (-)
LOC110520015 LOC106573699 coding upstream 216816 25679909 ~ 25712438 (-)
LOC118966628 NA coding upstream 269862 25732955 ~ 25747219 (-)
LOC110520038 LOC106573702 coding upstream 432123 25895216 ~ 26501491 (-)
G25328 NA non-coding downstream 799 25458683 ~ 25458943 (-)
G25325 NA non-coding downstream 2625 25456903 ~ 25457117 (-)
G25320 NA non-coding downstream 5328 25454215 ~ 25454414 (-)
G25298 NA non-coding downstream 19613 25439803 ~ 25440129 (-)
G25297 NA non-coding downstream 21332 25438132 ~ 25438410 (-)
G25378 NA non-coding upstream 40091 25503184 ~ 25503490 (-)
G25390 NA non-coding upstream 47681 25510774 ~ 25510973 (-)
G25395 NA non-coding upstream 50365 25513458 ~ 25513689 (-)
G26149 NA non-coding upstream 95934 25559027 ~ 25559340 (-)
G26164 NA non-coding upstream 121328 25584421 ~ 25584864 (-)
G25117 zfpm1 other downstream 177724 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 178712 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 508355 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 521041 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 594908 24853824 ~ 24865158 (-)
LOC110520292 gnao1 other upstream 2172995 27631001 ~ 27781768 (-)
G28870 NA other upstream 2594350 28057443 ~ 28066305 (-)
G29355 NA other upstream 3240794 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 3817183 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 5668800 31131151 ~ 31132900 (-)

Expression


Co-expression Network