LOC110520015 (LOC106573699)


Basic Information

Item Value
gene id LOC110520015
gene name LOC106573699
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25679909 ~ 25712438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596976.2
CGACCCTATGCAAAGTGACTAGCATTGATACATTGTGGGAGGCAACAAATCTGCCCATggacagtggtggaaaagTCATGATCAGAAGTGTCTGTTTGTCCACTCCACGGTCCTGGGCGTGACTGTGAGACCAGGCTGCCATCTGCGAGGCCCTAGCTAGAGATGGACATTGAGGTGGGCATCCTGGAGGAGGACATGGAGGGCTCGTGGACCCTGCTATCGTGGCTGGCCTCCTGTGTAATGGTGTTTGGAGGGACCCTGCCCTACCTTCCTCAGTACCAGGAGATCCAGAGGAGCAGCATCACTGAGGGATTCTCCACCCGCGTCTGTCTGCTTCTGCTCATCGCCAACATCCTACGCATCTTCTGGATGGGGAAGCAGTTTGAACTGACTCTGCTCCTCCAGAGTGTTGTGATGATCATTACCATGCTGGCTATGCTCCATCTCTGCTGCAACATCCAGCACACCAACCGCGTCAGCACCAAAAAGCGCCACTTCACAGaTCTGGACCTGTGCTACTTCTGGAGCTGGAATGCGTTTGAGGAATACCTGCTGTTCTGCTTTGCCTTCACGGTGCTGTGTGCCTTCCTCACCCTGCTCCTGCTGGACTCTGTGCTGTTTGTGGAGGGCCTAGGCTCCCTGGCTATGCTGTTCGATGCCATCATGGGGGTGCCACAGCTGCTGCAGAACTTCCACAACCACTCCACCCTCGGCATGAGGTGAGTGAGTGGCCTGGCTGTAACACACTCCATGAACCCTGtgtggtgtatactgtatgtcaataggctgttggtcgacagagtttttttttttcttgagcggtcgcaaatttatttagattttttttatgacatacaagacacctgtctgattcgcgCCTTCTCAGTGGACTAATCATTGCGGAGGCCGctgggatggcacagtccatcactctaagacTTTGTACATTGTATATTGTATATGATTTAGGGCTGTCCGTTGGCCGACCAAAAGTAAtctgttctttcaaccaatcgattggtcgaaattTTTAAACTTgcatttttccatatatagacacaccctatgtgttataataaaaatcaatcaatcaaa

Function

NR:

description
PQ-loop repeat-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596976.2 True 1095 mRNA 0.50 4 25679909 25712438

Neighbor

gene id symbol gene type direction distance location
LOC110520008 kcng4 coding downstream 113316 25537115 ~ 25566593 (-)
LOC110520001 wfdc1 coding downstream 194697 25473536 ~ 25485212 (-)
LOC118959932 chtf8 coding downstream 216816 25459742 ~ 25463093 (-)
LOC110519951 LOC106573692 coding downstream 298053 25372830 ~ 25381869 (-)
kiaa0513 kiaa0513 coding downstream 507323 25154725 ~ 25172586 (-)
LOC118966628 NA coding upstream 20517 25732955 ~ 25747219 (-)
LOC110520038 LOC106573702 coding upstream 182778 25895216 ~ 26501491 (-)
LOC110520062 NA coding upstream 1213860 26926298 ~ 26939324 (-)
LOC118966748 NA coding upstream 1430922 27143360 ~ 27143413 (-)
LOC110520098 LOC106573710 coding upstream 1493473 27205911 ~ 27215251 (-)
G26230 NA non-coding downstream 12352 25666939 ~ 25667557 (-)
G26217 NA non-coding downstream 26514 25651058 ~ 25653395 (-)
G26164 NA non-coding downstream 95045 25584421 ~ 25584864 (-)
G26149 NA non-coding downstream 120569 25559027 ~ 25559340 (-)
G25395 NA non-coding downstream 166220 25513458 ~ 25513689 (-)
G26216 LOC106573700 non-coding upstream 106 25712544 ~ 25732197 (-)
G26328 NA non-coding upstream 153806 25866244 ~ 25932705 (-)
G26538 NA non-coding upstream 485714 26198152 ~ 26245155 (-)
G26573 NA non-coding upstream 536409 26248847 ~ 26340716 (-)
G26654 NA non-coding upstream 661205 26373643 ~ 26374041 (-)
G25117 zfpm1 other downstream 397891 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 398879 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 728522 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 741208 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 815075 24853824 ~ 24865158 (-)
LOC110520292 gnao1 other upstream 1923650 27631001 ~ 27781768 (-)
G28870 NA other upstream 2345005 28057443 ~ 28066305 (-)
G29355 NA other upstream 2991449 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 3567838 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 5419455 31131151 ~ 31132900 (-)

Expression


Co-expression Network