LOC110520022 (LOC106573700)


Basic Information

Item Value
gene id LOC110520022
gene name LOC106573700
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25712423 ~ 25732202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596988.2
ACTTTGCATAGGGTCGGGTTTACGAGACTATGAAAACCGCGGGATTAAAATAATCGAATTTCGCCAAATCGAGGCTTTGCATACCAAAAACTAAACGTACCACATTCCGTTGGGGTCCTGCTTCAGTGTTCTCGCGATACGTGTTTTGCAAAAACAGCTGACTGACATATCTGGATTTACGTGGTAGAGCTAGGGATCCTGTATTTATTTTTGCCCAAGGTAGCTAATTTAGCTAGAGTTCATTTTACACCACTTAATAACACGCGTGTCGTGCATAGGGAAAATATGGCAGACACTGATCCAAAGTCAGTTCAGGACCTTACCAATGTGGTCCAGACGCTGCTGCAACAGATGCAGGATAAGTTCCAGACCATGTCAGACCAGATCATCGGAAGAATTGATGAGATGAGCACCCGCATCGATGACCTGGAGAAGAACATTGCTGACCTCATGACCCAGGCAGGCGTGGAGGAGATCGAGGGGGTCAAGGAACCGCAAGTCAAAGAAGGACAAGGGTCATGAAGGTTGCCAGACGACAAGCTGTCAAGGACTTTCTTCAGGAGCAGCATACTCTTCCACTATAACCATGAACTATCTTGatttagtgtgttgtgaaatgcTTTTTTATATTGACTATTGTAATAAAAGTAACAGTTCTAATGTAGTGACTTGAAGATGTGTTATTTGTAAATGAGTATTTCCCTCAGAACTTTTCAGCCCTGTTAGTAATGGTTGATTGAAGTATACAGTAGAAGCCAGTGATATTAGCAGCACTGTGCCAAGTGGAATGCATTCAAAATTCAACAGATTTTCTTCTATTAAAGTTATTTAATACAAACAAA
>TU29432
CAAAAACAGCTGACTGACATATCTGGATTTACGTGGTAGAGCTAGGGATCCTGTATTTATTTTTGCCCAAGGTAGCTAATTTAGCTAGAGTTCATTTTACACCACTTAATAACACGCGTGTCGTGCATAGGGAAAATATGGCAGACACTGATCCAAAGTCAGTTCAGGACCTTACCAATGTGGTCCAGACGCTGCTGCAACAGATGCAGGATAAGTTCCAGACCATGTCAGACCAGATCATCGGAAGAATTGATGAGATGAGCACCCGCATCGATGACCTGGAGAAGAACATTGCTGACCTCATGACCCAGGCAGGCGTGGAGGAGATCGAGGGGGTCAAGGAACCGCAAGTCAAAGAAGGACAAGGGTCATGAAGGTTGCCAGACGACAAGCTGTCAAGGACTTTCTTCAGGAGCAGCATACTCTTCCACTATAACCATGAACTATCTTGatttaATGTGTTATTTGTAAATGAGTATTTCCCTCAGAACTTTTCAGCCCTGTTAGTAATGGTTGATTGAAGTATACAGTAGAAGCCAGTGATATTAGCAGCACTGTGCCAAGTGGAATGCATTCAAAATTCAACAGATTTTCTTCTATTAAAGTTATTTAATACAAAC

Function

NR:

description
heat shock factor-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596988.2 False 842 mRNA 0.42 4 25712423 25732202
TU29432 True 620 TUCP 0.43 5 25712571 25732199

Neighbor

gene id symbol gene type direction distance location
LOC118945804 NA coding upstream 209453 25491535 ~ 25502970 (+)
LOC110519996 LOC106573694 coding upstream 238996 25463100 ~ 25473427 (+)
LOC110519986 LOC106573695 coding upstream 254152 25448856 ~ 25458271 (+)
il17c1 il17c1 coding upstream 299098 25411732 ~ 25413325 (+)
zc3h18 LOC106573693 coding upstream 302470 25382521 ~ 25409953 (+)
LOC110520029 LOC106573701 coding downstream 45409 25777611 ~ 25789399 (+)
LOC110520043 NA coding downstream 754987 26486813 ~ 26492347 (+)
LOC118966629 NA coding downstream 779455 26511657 ~ 26538362 (+)
si:ch211-216l23.2 LOC106573703 coding downstream 948009 26680211 ~ 26696018 (+)
LOC110520060 LOC106573705 coding downstream 981562 26705640 ~ 26865295 (+)
G25461 NA non-coding upstream 116210 25594251 ~ 25596213 (+)
G25453 NA non-coding upstream 128320 25583649 ~ 25584103 (+)
G25383 NA non-coding upstream 203599 25508417 ~ 25508824 (+)
G25382 NA non-coding upstream 204124 25508072 ~ 25508299 (+)
G25345 NA non-coding upstream 221637 25490587 ~ 25490786 (+)
G25791 NA non-coding downstream 320293 26052495 ~ 26052975 (+)
G25985 NA non-coding downstream 585622 26317824 ~ 26319831 (+)
G26758 NA non-coding downstream 772028 26504230 ~ 26504473 (+)
G26765 NA non-coding downstream 783341 26515543 ~ 26546294 (+)
G24365 kiaa0513 other upstream 544095 25167817 ~ 25168328 (+)
G24435 NA other upstream 600562 25111210 ~ 25111861 (+)
G24307 NA other upstream 855172 24856944 ~ 24857251 (+)
G24295 NA other upstream 871961 24839985 ~ 24840462 (+)
G26858 NA other downstream 923095 26655297 ~ 26655598 (+)
G27553 NA other downstream 1581620 27257563 ~ 27316517 (+)
LOC110520258 LOC106560847 other downstream 1830117 27560102 ~ 27565152 (+)
G28280 NA other downstream 2112438 27844640 ~ 27845011 (+)

Expression


Co-expression Network