LOC110520062


Basic Information

Item Value
gene id LOC110520062
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 26926298 ~ 26939324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974585.1
GACCCTCACTGGGGAAGAGGCCCTTGATtgagaaggggtgagagggagccGTGAGAGATCAAACTCCGAACTAAACAGCCAACATTGTAAAGGTCTAATTGCATACTTTGAGATACAGTCTATTTGAAATACACATTTGATTACTTTTAATCAGGCATTTTTGTTGCAGTTACAATGTATGAGAATGACCTCCaaccatcttctctctctccatctctctctccatgcaggCCCACTTGTAGTATGTGGTGGGGAAGTTGTTCTCTGCTTGTCTCACATAAATAGGAGGTACAGGAGTCCACTCTGTTCCATGTACCCTGGCTCTCTACGCACTTtctgcaggtaaccatgatttcTATCAATCACCCCGTAACTTAGTCATTAGTGGTATTGAGAGTTCCTCTAATTGCTTTGTTGCTGTATGGAGGCATAGTTATTGTGACATTTATCAAGCAGAGAGGATGACATGTTATTGACTTTGTCTAACCGTTGTTTATTTGGTTAGAAATATGGTTCTATACAGAGGATGGACCAACACTGAATGTGTAGAAGTAGGTTAGGTAAGGGAtgaagtgaaaacctacaggaggatagctctctACGACGAGGGTTGGGTATTAATTGACAGCAAGCTGTTAAATACTGAACCATACTGACTGACGAGTGACATGGATTCGTACAGCTCGCCTCAATCCGGCATAGTATGTTATCACTTATTTGGCTAAATTATTATCCATAGTTGCCTCTTTTGATACAGCAGCAGTCTTTAAATGGACTGTTACCTTGAATGCAATACTAACATGTTAAAATGTGTCATTTCCTGACATCATATTTTTACTGTCTCTCACTGCAGTTGTTTTCCCAGGAGACAGATCAGGGTGTGTGTAGAAAACATGTCTGACAAGGTCTAGTCTAGTTCATTGCCCTGGATCACTACACCTATGAGGCAGAGGATGCCGAGTTTGGACCTGGAAGTCCTGACCAGGGGTATCAAACTCCAATGTCTATGAACCTGTTGTGTTGGCGTAGTTACCGGAcctgtcacaacttccgccgaagttggctcctctccttgttcgggctaCGTTTGGCGGTTGACATCACCGGCTTTCCAGACATCGCCAtatttcatgtatccatttgttttgtcttgttccctgcacacctggttttcattccccaatcaatctacatgtatttattcctctgttccccatcatgtctttgtgtatgattgtttgtgttatgtgtgtattgttgacgCGCCAGACTGGATTGTTTTTTCCGTGTTATTTTTCACAAAGATGTTTATTGTTAAACATAATTCTTGTGACTGTTTTGCGAATTTTGCACTTTTGcctaaataaagtgtgcgcctgttcacaaatctctgctctcctgcacctgacgtCGCTACCAGTATGCACACATATGACAGGACCAGTGGGAGGAGGTGTCGATGACAGTGATGCGTCCCAGTGTGATCTCAACAAACAGCCGCTGTGCCAACACCATGCCTGAAGATGACAACGAAATGATATTCTTCCACCCTGgatcacaATATCCCAAGACCAGCATTGAGGCAGGAATGAACTACACTGTTCGCCTGAGCTTGCCCCTCTACTCTGCACTTAGTGATGTCCAGTCCCCATACACACTCATCGACTTGAACCTGGAGATCTTCACTGGTTTTGAGGGAGGTGAAGTGGCCACCAACAGTGCCTGGGATACATTCCAGCATTACCGCTGTCTGGAGAACAACCAGAGCGTGGTCAAGATCGCTTCCACTGACATCTTCAGCAAAAACATCTTTAGCGTTTCAGCTCTGCTGCACCCGGGATCTAAAGGTTTCtgaggacagagtgagagactGAGACGTTCGGTAATGGAAAGAGACAGTgagaagcagagggagggagggagtagaggaacACAAGGGTTGGAAAGGTGAGGCGAAGTGCGAGTGAGTGTGGACACTTTTAAGAAGATGTGTCAGAGACACGAGAAACACAAAGATATCATTGGCAGTGTTTGATGGAATATTTACTTTAAGACAACACGGAAGTGAAACTGTAAATCAAGGCAAAAACAATTAGTGTGTATACAGCCACATGCAAGCAcgcacacaaacccacacaaacacacagacacacactcctgaCAGCTTTGACAAGGAGGAGTGTGCAATGTTTTATAAATTCTCCATGTAAAATGCAGAATATTTTGATATCTGCCACAAGTGTCACAGCCAAATCAAGACTCCTCATGAGATAGTAACAGTATACATGTACTCTGCTCTGAGTGGCATCTGATCTGATGCTTTTTAAGACACCATGTCCATTTCCCACACAGTGCAGCCATCAGTGTACTAGGGGGAAAAACTGCCTCATAAATATACATGGTTGTTTCTCTAGTATGAACAAACAAGGAAGCATCCCTGCTAAC
>XM_036974576.1
GACCCTCACTGGGGAAGAGGCCCTTGATtgagaaggggtgagagggagccGTGAGAGATCAAACTCCGAACTAAACAGCCAACATTGTAAAGGTCTAATTGCATACTTTGAGATACAGTCTATTTGAAATACACATTTGATTACTTTTAATCAGGCATTTTTGTTGCAGTTACAATGTATGAGAATGACCTCCaaccatcttctctctctccatctctctctccatgcaggCCCACTTGTAGTATGTGGTGGGGAAGTTGTTCTCTGCTTGTCTCACATAAATAGGAGGTACAGGAGTCCACTCTGTTCCATGTACCCTGGCTCTCTACGCACTTtctgcaggtaaccatgatttcTATCAATCACCCCGTAACTTAGTCATTAGTGGTATTGAGAGTTCCTCTAATTGCTTTGTTGCTGTATGGAGGCATAGTTATTGTGACATTTATCAAGCAGAGAGGATGACATGTTATTGACTTTGTCTAACCGTTGTTTATTTGGTTAGAAATATGGTTCTATACAGAGGATGGACCAACACTGAATGTGTAGAAGTAGGTTAGGTAAGGGAtgaagtgaaaacctacaggaggatagctctctACGACGAGGGTTGGGTATTAATTGACAGCAAGCTGTTAAATACTGAACCATACTGACTGACGAGTGACATGGATTCGTACAGCTCGCCTCAATCCGGCATAGTATGTTATCACTTATTTGGCTAAATTATTATCCATAGTTGCCTCTTTTGATACAGCAGCAGTCTTTAAATGGACTGTTACCTTGAATGCAATACTAACATGTTAAAATGTGTCATTTCCTGACATCATATTTTTACTGTCTCTCACTGCAGTTGTTTTCCCAGGAGACAGATCAGGGTGTGTGTAGAAAACATGTCTGACAAGGTCTAGTCTAGTTCATTGCCCTGGATCACTACACCTATGAGGCAGAGGATGCCGAGTTTGGACCTGGAAGTCCTGACCAGGGGTATCAAACTCCAATGTCTATGAACCTGTTGTGTTGGCGTAGTTACCGGAcctgtcacaacttccgccgaagttggctcctctccttgttcgggctaCGTTTGGCGGTTGACATCACCGGCTTTCCAGACATCGCCAtatttcatgtatccatttgttttgtcttgttccctgcacacctggttttcattccccaatcaatctacatgtatttattcctctgttccccatcatgtctttgtgtatgattgtttgtgttatgtgtgtattgttgacgCGCCAGACTGGATTGTTTTTTCCGTGTTATTTTTCACAAAGATGTTTATTGTTAAACATAATTCTTGTGACTGTTTTGCGAATTTTGCACTTTTGcctaaataaagtgtgcgcctgttcacaaatctctgctctcctgcacctgacgtCGCTACCAGTATGCACACATATGACAGGACCAGTGGGAGGAGGTGTCGATGACAGTGATGCGTCCCAGTGTGATCTCAACAAACAGCCGCTGTGCCAACACCATGCCTGAAGATGACAACGAAATGATATTCTTCCACCCTGgatcacaATATCCCAAGACCAGCATTGAGGCAGGAATGAACTACACTGTTCGCCTGAGCTTGCCCCTCTACTCTGCACTTAGTGATGTCCAGTCCCCATACACACTCATCGACTTGAACCTGGAGATCTTCACTGGTTTTGAGGGAGGTGAAGTGGCCACCAACAGTGCCTGGGATACATTCCAGCATTACCGCTGTCTGGAGAACAACCAGAGCGTGGTCAAGATCGCTTCCACTGACATCTTCAGCAAAAACATCTTTAGCGTTTCAGCTCTGCTGCACCCGGGATCTAAAGGTATGGCACCACACTCACAACAGTCATGTATTACTGCTTAAATATCATTAAACATACTTGTGCAGAGCatttcccttttccacattttgttatg
>XM_021597071.2
gggggccaaatactttcgcaaggcactgtatttaaactTTTTATCTTCTTAAACTCtggttttaaacctaaccctaaccttaaccacactgctatccGTATGCCTTTCCCTAACATTAAATTAAGACCAacaagcacatttttgttttcccaAATTTTTATGATgcagacaattttgactttgtggctgtgttatctacagGATTTTGACTGTGAAATGCAAGGTGATGGTGGTGAAGTAGGGATGATGACCAATGATAAAAAGgCCCACTTGTAGTATGTGGTGGGGAAGTTGTTCTCTGCTTGTCTCACATAAATAGGAGGTACAGGAGTCCACTCTGTTCCATGTACCCTGGCTCTCTACGCACTTtctgcaggtaaccatgatttcTATCAATCACCCCGTAACTTAGTCATTAGTGGTATTGAGAGTTCCTCTAATTGCTTTGTTGCTGTATGGAGGCATAGTTATTGTGACATTTATCAAGCAGAGAGGATGACATGTTATTGACTTTGTCTAACCGTTGTTTATTTGGTTAGAAATATGGTTCTATACAGAGGATGGACCAACACTGAATGTGTAGAAGTAGGTTAGGTAAGGGAtgaagtgaaaacctacaggaggatagctctctACGACGAGGGTTGGGTATTAATTGACAGCAAGCTGTTAAATACTGAACCATACTGACTGACGAGTGACATGGATTCGTACAGCTCGCCTCAATCCGGCATAGTATGTTATCACTTATTTGGCTAAATTATTATCCATAGTTGCCTCTTTTGATACAGCAGCAGTCTTTAAATGGACTGTTACCTTGAATGCAATACTAACATGTTAAAATGTGTCATTTCCTGACATCATATTTTTACTGTCTCTCACTGCAGTTGTTTTCCCAGGAGACAGATCAGGGTGTGTGTAGAAAACATGTCTGACAAGGTCTAGTCTAGTTCATTGCCCTGGATCACTACACCTATGAGGCAGAGGATGCCGAGTTTGGACCTGGAAGTCCTGACCAGGGGTATCAAACTCCAATGTCTATGAACCTGTTGTGTTGGCGTAGTTACCGGAcctgtcacaacttccgccgaagttggctcctctccttgttcgggctaCGTTTGGCGGTTGACATCACCGGCTTTCCAGACATCGCCAtatttcatgtatccatttgttttgtcttgttccctgcacacctggttttcattccccaatcaatctacatgtatttattcctctgttccccatcatgtctttgtgtatgattgtttgtgttatgtgtgtattgttgacgCGCCAGACTGGATTGTTTTTTCCGTGTTATTTTTCACAAAGATGTTTATTGTTAAACATAATTCTTGTGACTGTTTTGCGAATTTTGCACTTTTGcctaaataaagtgtgcgcctgttcacaaatctctgctctcctgcacctgacgtCGCTACCAGTATGCACACATATGACAGGACCAGTGGGAGGAGGTGTCGATGACAGTGATGCGTCCCAGTGTGATCTCAACAAACAGCCGCTGTGCCAACACCATGCCTGAAGATGACAACGAAATGATATTCTTCCACCCTGgatcacaATATCCCAAGACCAGCATTGAGGCAGGAATGAACTACACTGTTCGCCTGAGCTTGCCCCTCTACTCTGCACTTAGTGATGTCCAGTCCCCATACACACTCATCGACTTGAACCTGGAGATCTTCACTGGTTTTGAGGGAGGTGAAGTGGCCACCAACAGTGCCTGGGATACATTCCAGCATTACCGCTGTCTGGAGAACAACCAGAGCGTGGTCAAGATCGCTTCCACTGACATCTTCAGCAAAAACATCTTTAGCGTTTCAGCTCTGCTGCACCCGGGATCTAAAGGTATGGCACCACACTCACAACAGTCATGTATTACTGCTTAAATATCATTAAACATACTTGTGCAGAGCatttcccttttccacattttgttatg

Function

NR:

description
laminin subunit beta-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974585.1 False 2445 mRNA 0.44 5 26926298 26938743
XM_036974576.1 False 1941 mRNA 0.44 4 26935460 26938743
XM_021597071.2 True 1975 mRNA 0.43 5 26935460 26939324

Neighbor

gene id symbol gene type direction distance location
LOC110520038 LOC106573702 coding downstream 424807 25895216 ~ 26501491 (-)
LOC118966628 NA coding downstream 1179079 25732955 ~ 25747219 (-)
LOC110520015 LOC106573699 coding downstream 1213860 25679909 ~ 25712438 (-)
LOC110520008 kcng4 coding downstream 1359705 25537115 ~ 25566593 (-)
LOC110520001 wfdc1 coding downstream 1441086 25473536 ~ 25485212 (-)
LOC118966748 NA coding upstream 204036 27143360 ~ 27143413 (-)
LOC110520098 LOC106573710 coding upstream 266587 27205911 ~ 27215251 (-)
LOC110532124 LOC104966864 coding upstream 286839 27226163 ~ 27299859 (-)
LOC110532131 aars coding upstream 377348 27316672 ~ 27321126 (-)
LOC110520123 LOC106573712 coding upstream 393224 27332548 ~ 27342006 (-)
G27222 NA non-coding downstream 1633 26924451 ~ 26924665 (-)
G27204 NA non-coding downstream 23252 26902829 ~ 26903046 (-)
G27124 LOC106573705 non-coding downstream 177536 26737669 ~ 26748762 (-)
G27076 LOC106562530 non-coding downstream 269726 26656353 ~ 26656572 (-)
G27073 NA non-coding downstream 275037 26651005 ~ 26651261 (-)
G27257 NA non-coding upstream 622 26939946 ~ 26940178 (-)
G27253 NA non-coding upstream 1985 26941309 ~ 26950750 (-)
G27271 NA non-coding upstream 17097 26956421 ~ 26956742 (-)
G27273 NA non-coding upstream 17593 26956917 ~ 26957213 (-)
G27294 NA non-coding upstream 34422 26973746 ~ 26973945 (-)
G25117 zfpm1 other downstream 1644280 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 1645268 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 1974911 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 1987597 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 2061464 24853824 ~ 24865158 (-)
LOC110520292 gnao1 other upstream 696764 27631001 ~ 27781768 (-)
G28870 NA other upstream 1118119 28057443 ~ 28066305 (-)
G29355 NA other upstream 1764563 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 2340952 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 4192569 31131151 ~ 31132900 (-)

Expression


Co-expression Network