LOC110532124 (LOC104966864)


Basic Information

Item Value
gene id LOC110532124
gene name LOC104966864
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27226163 ~ 27299859 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532124
ATGGGCCTCAGCTCCCCTGATCTTTGGACCCTCACCCCTCCAGGGCTGCCCCACACCCAGCCCCAGTGCCCCTCCCGGTGCTGGGTGACGGAGGGCACCCGGCCCCCCCAATTCCATGCGCTGTTTCCTGCCACCGTCCCCACCCTGCTGGCCTCAGCGCCACTCAGTGTGCTGGCTGGCTCACGCTGGCTCAGAGAGAACACTCTCCCAGcgccacagacagagagagggagagccgcTGCTCCACAGAGAGTCTCTCAGTGTCTCACACTAAACAGTTTGTCAGAGAGTCTGTGTCTGTTGCTTCTCCCCACTCTCCGTCTCTCCGCACGCAGCTGCCGCTCTTCACACCCACCAGCCCGGCTCTTCACTCCCTGCACTGCTCCAGTCCTGGATGGGAGCTCCAGCAGTGCCTGCACATACAAAACTCTGATGAACTCTGCACAAATTATTCAGGAGATAGTTGTTTCTGGGGGGGAAGATCATTGAGCTCCTGCGTCCAGATGCCAACACAGGGAAGGTTCATACCCTCCTCACCATGGAGGTGTTTGGCAATATCCGCTCCTTTATGGCCTTCAGGCTGACTGGAGGAACTAAAGACTACATTGTGGTGGGCAGTGACTCGGGCCTCATCGTGATCCTGGAGTACCACCCCTCCAATAACACGTTTGAGAAGATCCATCAGGAGACCTATGGCAAGAGTGGCTGTCGTCGCATCATCCCTGGACAGTTCCTTGCCGTCGACCCCAAGGGCAGGGCAGTCATGATGGGTGCCATTGAGAAGCAGAAGCTGGTATACATCCTGAACAGAGATGCAGCAGCACGTCTCACCATCTCCTCGCCCCTGGAGGCTCACAAGGCCAACCTGCAGGTGTACCACGTGGTAGGAGTGGACGAGTGCTTTGAGAACCCAATGTTTGCCTGTCTAGAGACTGACTATGAGGAAGCTGACAATGACCCCACTGGAGAGGCTGCATCCAATACCCAGCAGACACTGACCTTCTATGAGTTGGACCTCGGTCTGAACCACGTGGTGCGCAAGTACAGCGAGGCCCAGGAGGAGCATGGCAACTTCCTCATCACAGTTCCTGGAGGCTCTCATGGTCCCAGTGGAGTTTTCATCTGTTCAGAGCACTACATTACCTACAAAAACTTTGGCAATCAGCCTGACATTCGCTGTCCCATCCCACGCAGGAGGAATGACCTGGATGATTCTGAGAGAGGCATGATCTTCGTCTGCTCAGCCACCTacaagaccaagtccatgttctTCTTCCTGGCCCAAACGGAGCAGGGGGACATCTTCAAGGTCACCCTGGAGACGGATGAGGAGATGGTGAGGGCAATGAGGATGAAGTACTTTGACACCATCCCTGTAGCCACAGCTGAAGACCGGCTTTTTATTTGTCTCTTCAGAGTTCGGCAACCATTACCTTTACCAGATAGCCCATCTTGGAGATGATGATGAAGAGCCAGAATTGTCCTCTGCCATGCCCCTGGAGGGAGATTTCTTCTCCCAGCCACGCCCCCTCAAGAACCTGGTGCTGGTGGACGAGCAGGAGaacctctcccccatctcctgcCAGacagATGAGTTTGACGCCTACATCATTGTGTCCTTTGTCAACGCCACCCTGGTTCTGTCTTATTGGAGAGACTGTAGAGGAAGTGACAGACTGGTTTCCTGGGGAccaccctctcctgctctctgctTGGGGAGGATGCTCTGGTGCAGGTGTATCCTGATGGTATTCGTCACATCCGTGCTGATAAGCGTGTGACTGAGTGGAAGACTGAGTGGAAGACTCCAGGGAAGAAGACCATTATTCGCCGTGTAGTCAACCAGAGGCAGGTGGTCATTGCTCTGACCGGAGGAGAGCTGGTTTACTTTGAGATGGAccagtcTGGCCAGCTGAATGAGTACACAGAAAGGAAGGAGATGTCCACTGATGTGGTGTGTATGAGCTTGGCCGGCGTCCCGTCTGGCGAGCAGCACTCCTGTTTCCTGGCTGCGGGGCTGGTCGACAACACAGTCCACATCATCTCTTTGGATTCCTCGAACTGTCTTCAGCCCCTCAGTATGCAGGCCCTGCCAGCCCAGCCTGAGTCTCTGTGTATAGTGGAGAAGGAAGATGAGCTAGGAGCGAAGGGCACTGTTGGTTTCCTCTTCGCTCCATCTCAACATCGGACTGCAGTGCGGACTACACCGGGATTCCCATACCGTTATGCACGAATACGTGTACAGTTACATCCTTACTCTCCGACCATTGATCTCCTCTGTGTTGGCCATGTCTAGCCACTCCTGGCTGAGCTACTCTTACCAGTCCCGCTGACGCCCCTGTCCTATGAGACTCTGGAGTACGCCTCAGGCTTCGCCTCTGAACAGTGTCCTGAGGGCATTGTGGCCATCTCCACCAACACCCTGAGGATTCTGGCCTTGGAGAAGCTGggtgctgttttcaaccaggtgGCCTTCCCCCTGCAGTACACACCTCCAAGTTTGTCATCCACCCAGAGACCAACAACTTGATCCTCATAGAGACGGATCACAATGCCTACACAGAGGCCACCAAGGCCCAGGCAGGTGAGGATGAGAGGGAGCTGGCAGCAGAGATGGCCGCTGCTTTCCTCAACGAGAACCAGCCAGAGGCCATCTTTGGGGCACCCAAGGCTGGGTCAGGCCAGTGGGCCTCTCTGGTGTGTCTTGTCAACCCCATCCAGGGCTACACTCTGGACCTGGTCCAATTGGAACAGAACGAGGCTGCCTTCAGACTGTGTCGGTTTGCCAGTGGAGGTGATGACTGGTGGGGGTGGCCCGGGGACATGATCCTTAACCCCCGCTCTGTGGGAGGCGGTTTCATCTATACCTATCggctgggagggggaggggacaaGCTGGAGTTTATGCACAAGATTCCAAGTGAGGACATTTCTCTGGCCATCGCTCCGTTCCAGGGCCGTGTGCTGGTGGGCGTTGGCAAACTGCTACGCATCTACGACCTGGGCAAGAAGAAGCTGCTGCACATGTGTGAGAACAAGTATGTCCCCAACCTGGTGACTGGCATCCACACCATCTGTCAGCGGGTCATAGTGACTGACGTACAGGAGAGTCTGTTCTGGGTGCGCTACAAGCGTAGCGAGAACCGGATGATCCTCTTTGACGATGACACCCATCCTCGCTGGGTAACCACCGCCTGCCTGCTGGAGTACGACACCATGGCTTCAGCCGACAAGTTTGGCAACATCAGCATTGTGTGTTTGCCCCCCAACTCCAGTGATGATGAGGACCCAACTGGGAACAAGGCGTTGTGGGATAGGGGTCTGCTGAACGGAGCCTCTCAGAAGGCTGTGATCGTGAGCTACCACATCGGGGAGACTGCTGTCACTGCAGAAGACCACACGGATTCCCGGCAGCTTAGAGTCTGGTCTACACAACAGTCTGTCGGCGTCCTGGTGCCCTTCACTTCCCACGAGAATGTAACAGACGGAGATCTGTGTGAGCAGTTCAACTCCATGGACCTCCACAAGCAGAAGAGTTGCTGAAGAGCTGGACCGTACACCACCTGAGGTCTCAAAGAAACTGGAGGACATCTGCACACACTATGCCTTCTAGAACCCTCGTGTTCTGTACATGCACaaatacactcacacatacaaacTGTAATTTACAACACCTGATATGTTGAGACTGACACCTGTTCCGCTGTGTTAACATGAAGAGGTGGGAGGTGAACACATTTTTCGAAGTCTTCATCTGTAGCTGCTTTGATTTGTCCTCTAGGCCCTGATTTGTTTGTTAGGCCTATAAATactataatactaataataatctATGGTGAATATTTACCCTGTGGTTTTCACTCATAGGATGCCATTTAAACCTAGCTGGATTCTTTTGAATTTATCATGTGTATATCATCAGTGCTATAGACGCATACAGGAGCATTTTTGGGGTTTTAATGCGTGTGACGCATGGCCTAGTAAACACTTTGATATAATTAGGTCAAATGTTTTTGCATTGTGTGTTTGTTGAAACAATCCATTTTGAGTCTTTGCTGTAATTGAGTGCCACAAATGAAAAGGACTTTTTCTTTTTGATGTCAATTTTAATCCTAAAAAGATTTTGGATTCTCAAACAGCTCTTTTTTTTATGGGCTTAAAAGGTATATTCCTTGCTGGACAAATTGTCCACATCTATTGTACAAGATTACAGGATTGTGTACAATAGCAAGTAATACAGCTGGATGGTGAACCTTTTTCCCCTTAATAGTCCTGTGAACTTCAAACAACAGCCACAATCACCACACTAGATGAGACACCATTCCATATTAGTCATGGGAAAATGGGagcaggctattttgtaaatgaaatACTGCCATGTCTGTGTCACTATAGCTATGTTCCCATTAACTAGcccagtgtttaaaaaaaaatgtattctgttttttttttagaaagtttgcatttaaaaaaatgtgacaATTGCCTGCTAGGGTGTTTCCATTTAACTATCTTGTCCATAAAAACAGCTGGTCGTAatgtcacacacaaaaaaaaatactttcaCAACCTACAGTAGCTagatttccatccaattggcaagaTTTTTGTGAATATTTTAAAATCCTCCCAAAAAATGTGCAGTTTCCCACCaaagatgtttccatcaaattgacatTGCAGATAAAAGCCTGTGCGTGATGACATGGTGTACAAAAAAATTCCTTTGCGATTAAATTCCCATGTCccgaaaaaaa
>TU32025
GCTGTTTAACATGCTGTTTAACATACTGTTTTCCATTTGGCTGGTACTCAGTGGGAAATTCCCTCCACTTTGACTTATTGTGGGCAAGTGGTAAAAAGGGTGCATGTAAGCGGTGTTTTGTGGGTGGGGAGTGTGAAGTGAGTTAGAATGTTTATGTAATGACCCTGTACCATGTCTCTTGTTCTGTGTCAGGCTGTGATCGTGAGCTACCACATCGGGGAGACTGCTGTCACTGCAGAAGACCACACGGATTCCCGGCAGCTTAGAGTCTGGTCTACACAACAGTCTGTCGGCGTCCTGGTGCCCTTCACTTCCCACGAGAATGTAACAGACGGAGATCTGTGTGAGCAGTTCAACTCCATGGACCTCCACAAGCAGAAGAGTTGCTGAAGAGCTGGACCGTACACCACCTGAGGTCTCAAAGAAACTGGAGGACATCTGCACACACTATGCCTTCTAGAACCCTCGTGTTCTGTACATGCACaaatacactcacacatacaaacTGTAATTTACAACACCTGATATGTTGAGACTGACACCTGTTCCGCTGTGTTAACATGAAGAGGTGGGAGGTGAACACATTTTTCGAAGTCTTCATCTGTAGCTGCTTTGATTTGTCCTCTAGGCCCTGATTTGTTTGTTAGGCCTATAAATactataatactaataataatctATGGTGAATATTTACCCTGTGGTTTTCACTCATAGGATGCCATTTAAACCTAGCTGGATTCTTTTGAATTTATCATGTGTATATCATCAGTGCTATAGACGCATACAGGAGCATTTTTGGGGTTTTAATGCGTGTGACGCATGGCCTAGTAAACACTTTGATATAATTAGGTCAAATGTTTTTGCATTGTGTGTTTGTTGAAACAATCCATTTTGAGTCTTTGCTGTAATTGAGTGCCACAAATGAAAAGGACTTTTTCTTTTTGATGTCAATTTTAATCCTAAAAAGATTTTGGATTCTCAAACAGCTCTTTTTTTTATGGGCTTAAAAGGTATATTCCTTGCTGGACAAATTGTCCACATCTATTGTACAAGATTACAGGATTGTGTACAATAGCAAGTAATACAGCTGGATGGTGAACCTTTTTCCCCTTAATAGTCCTGTGAACTTCAAACAACAGCCACAATCACCACACTAGATGAGACACCATTCCATATTAGTCATGGGAAAATGGGagcaggctattttgtaaatgaaatACTGCCATGTCTGTGTCACTATAGCTATGTTCCCATTAACTAGcccagtgtttaaaaaaaaatgtattctgttttttttttagaaagtttgcatttaaaaaaatgtgacaATTGCCTGCTAGGGTGTTTCCATTTAACTATCTTGTCCATAAAAACAGCTGGTCGTAatgtcacacacaaaaaaaaatactttcaCAACCTACAGTAGCTagatttccatccaattggcaagaTTTTTGTGAATATTTTAAAATCCTCCCAAAAAATGTGCAGTTTCCCACC
>TU32039
AAGATTAGTCCTCATTGTTTGGATGACTGCACACCCACTGGCTGGGAAATGGACACAGTGCCACTATATAGAGAGAATCTGTGCAGAAAATTTGGGTTGACATGTGATTATCATGTCTCTTCCCTGACTATCCACTGGAGAGAGCTTCTGATTTCAACCCAAAAAAGCTCACTGTTGTAGCTGTTCTGTTAGTGTCTTCAAAGCCTGGATTGTTTTTTGTAACACTACAGTGTAAACCAGTTCCTGGAGGCTCTCATGGTCCCAGTGGAGTTTTCATCTGTTCAGAGCACTACATTACCTACAAAAACTTTGGCAATCAGCCTGACATTCGCTGTCCCATCCCACGCAGGAGGAATGACCTGGATGATTCTGAGAGAGGCATGATCTTCGTCTGCTCAGCCACCTacaagaccaagtccatgttctTCTTCCTGGCCCAAACGGAGCAGGGGGACATCTTCAAGGTCACCCTGGAGACGGATGAGGAGATGAGATGAGGATGAAGTACTTTGACACCATCCCTGTAGCCACAGCTGAAGACCGGCTTTTTATTTGTCTCTTCAGAGTTCGGCAACCATTACCTTTACCAGATAGCCCATCTTGGAGATGATGATGAAGAGCCAGAATTGTCCTCTGCCATGCCCCTGGAGGGAGATTTCTTCTCCCAGCCACGCCCCCTCAAGAACCTGGTGCTGGTGGACGAGCAGGAGaacctctcccccatctcctgcCAGATTGCTGACCTGACAGCTGGGGGGTGACCTCATTAGCATGTGGCAGGGGACCCAAATCCGTCCTCAGACATGGACTGGAGgacaatgacccaacacacctccaggatttgtaagggct

Function

NR:

description
hypothetical protein cypCar_00033419, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532124 False 4757 mRNA 0.50 23 27226163 27299859
TU32025 False 1500 lncRNA 0.51 2 27226267 27229084
TU32039 True 852 lncRNA 0.41 7 27243962 27263301

Neighbor

gene id symbol gene type direction distance location
LOC110520098 LOC106573710 coding downstream 10912 27205911 ~ 27215251 (-)
LOC118966748 NA coding downstream 82750 27143360 ~ 27143413 (-)
LOC110520062 NA coding downstream 286839 26926298 ~ 26939324 (-)
LOC110520038 LOC106573702 coding downstream 724672 25895216 ~ 26501491 (-)
LOC118966628 NA coding downstream 1478944 25732955 ~ 25747219 (-)
LOC110532131 aars coding upstream 16813 27316672 ~ 27321126 (-)
LOC110520123 LOC106573712 coding upstream 32689 27332548 ~ 27342006 (-)
LOC110520135 ar2bp coding upstream 73403 27373262 ~ 27375453 (-)
LOC110520144 rspry1 coding upstream 75981 27375840 ~ 27392581 (-)
LOC110520152 cpne2 coding upstream 105200 27405059 ~ 27445369 (-)
G27481 NA non-coding downstream 88833 27137100 ~ 27137330 (-)
G27476 LOC106573708 non-coding downstream 91142 27132927 ~ 27135021 (-)
G27478 NA non-coding downstream 94234 27131682 ~ 27131929 (-)
G27462 NA non-coding downstream 105244 27120706 ~ 27120919 (-)
G27414 NA non-coding downstream 146101 27079861 ~ 27080062 (-)
G28024 NA non-coding upstream 51446 27351305 ~ 27351655 (-)
G28033 NA non-coding upstream 103995 27403854 ~ 27404723 (-)
LOC110520201 NA non-coding upstream 185652 27485485 ~ 27486881 (-)
G28074 NA non-coding upstream 205544 27505403 ~ 27506148 (-)
G28106 NA non-coding upstream 246667 27546526 ~ 27546794 (-)
G25117 zfpm1 other downstream 1944145 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 1945133 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 2274776 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 2287462 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 2361329 24853824 ~ 24865158 (-)
LOC110520292 gnao1 other upstream 336229 27631001 ~ 27781768 (-)
G28870 NA other upstream 757584 28057443 ~ 28066305 (-)
G29355 NA other upstream 1404028 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 1980417 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 3832034 31131151 ~ 31132900 (-)

Expression


Co-expression Network