LOC110520123 (LOC106573712)


Basic Information

Item Value
gene id LOC110520123
gene name LOC106573712
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27332548 ~ 27342006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974703.1
GACAGGGCCGTTCCTCTCCAGTATAAATACTGGGTCCTGGTGGAGACGGGTAGAAAAGTGGGGCATACACCTTCAGGACTGAGTGAAAAGACAAAAGAGGAGTCAAACTTATCATAAAAGGAGGTTACACGGCAGAATGACTGACCAAAACGGTGTATTTATGGGGATGGACCTGCTTTGCCAGGTGAACAGCCATGCCCATCGTACAGAGGAGATGGACGTGGAAAGGCTGCTGGTTCGTCGGGGGCAGCCCTTCTCCCTTGCCTTGCAGTGCCACACAACCCTGTCCCCTAAACACAAACTAGCCATGATCTTGCATCTAGgTAAGGAGGGTGAGGTGGTGGTGAAGGTGTTGGATGCCCGTGCTGGCAGGGACAAGTGGTGGTTCCGCCAGCAGGGGGCTCAGAGTGAGGTGCTGCTGACGATCCACAGCCCAGCAGACGCCCCTGTGGGACTCTACAGCGTGACAGTGCTGCTCCTCTCCCCTGACGGACACATCCTGGAGAAGACAACACCAGAGACGTTCTACCTGCTCTTCAACCCCTGGTGCAAAGCTGACTCTGTGTACCTCCCTGACGAGGAGCTGCTAGAGGAGTACATCCTGAATGAAAATGGCCTCCTTTACCAGGGTTCCTGGGACCAGATTTCCTCACTACCCTGGAACTTTGGACAGTTTGAACAAGATGTGGTGGACATCTGTTTTGAAATCCTGGACAATTCACCTGCTGCACTGACAAACCCAGAGATGGACACAGCCAACCGAGCAGACCCAGTGTACGTGAGCAGGACAATTACTGCCATGGTGAATGCTAATGATGACCTTGGCGTGGTGTCGGGCCGTTGGGACGGGAAGTACGATGACGGGGTGCCGCCCACACGTTGGACTGGCAGTGTGCCCATCCTCAGGCGCTGGAGTGAGGCCGGGGCACAGAGGGTGCGCTACGGACAGTGCTGGGTGTTCTCAGGCGTAGCCTGTACAATTCTTCGCTGTCTGGGCATACCCACTCGCCCAGTTACAAACTACTCTTCTGCCCATGACACTGATGGCAACCTGAATGTGGACTATCTGTATGATGAGCAGCTGGAGAGTGTGTCTGAAGGCAGGAAGGACATGATCTGgaactACCATTGCTGGGTGGAGTCCTGGATGGACAGGGAGGATCTTCCTAAAGGCTATGATGGGTGGCAGGCTCTGGATCCCACCCCACAGGAGAGGAGTGATGGGGTGTACTGTTGTGGGCCCTGTCCAGTCAAGGCGGTGAGGGACGGTGATGTGGGGATGAAGTATGATGCAGCCTTCGTGTTCTCTGAGGTGAACGCAGACCTGGTCACCTGGATCGTCTACCCAGATGGCCAACGCTCACAAGTTTCCCTCAACCAGAATACAGTGGGCCAAAACATCAGCACCAAGAGTGTGTACGGAGACTACAGAGAGGACATCACTAAACATTACAAATACCCCGAAGGTTCAGTGAAGGAGCGTGAGGTGTATGAGAAGGCAGGACGGCGGGTAACGCAGCCGAATGGAGCACCAGGGCAGCTGGAGCTGAAGATCAAACACGCCCAGGCCGTCCTGGGGACAGACTTTGATGTGATAGTGGAGGTGCACAACGTCGGTGGAGAGGACACCCCAGCCCAGCTGACTGTGACGTCCAACGCTGTcacctacaacagcctccaccGGGGGGAGTGCCATAGGAAGACTGCCAGCCTGACCGTGCCAGCCCAGAAAGCTCATAAGGAAGTGCTGCGGCTACGGTACGAACACTACGGGGCATGTGTGTCTGAGCATAACCTGATCAGGGTCACAGCACTACTCCAGGTCAGCGGCCAGCCCGAAGTCGTCTTACAAGAGGTCAACATCCAACTGAGCATGCCTCAGCTCCATGTCAAGGTAGTGGGAGATGCAGTTGTATCTCGGAAATTGATTGCCCACATTAGCTTCACCAATCCACTGCCTATTACCCTCAGAGGGGGCGTGTTTACTGTGGAGGGGGCAGGTCTGACAGCAGCGCGGGAGATCCAAGCACCAGATGACATTGGACCAGGTCAAGAGGTCAAGGTCAAGTTGTCCTTCAAGCCCACCCGAGCAGGCCTGAGAAAACTGATGGTCGACTTTGATGCAGACAGAATAAGGGATGTTAAAGGCATTGCCACTTTGATTGTGAGAAACAAGTGAACTGTCAATTAACAACGTATATCATATCATGTATATTTCTATATAAAATAATTACCCTGTAAATGCAATATGAAAGTGAGTTGCAAAATCATGTGTTGTTATTTTCTATTCTTCTTGATGATCTTATGAAGAGATTTACAAGCCTTGGCAAAGAAAGGTGGGTCTCTGAATCCAAAAGTATTGCTAGAGTCCGGAgactaaatctaaatgtaaccATACCCtttgtcacgtagagtaggccagaaggctaaactgaaaaacctaacctctatcaaataAAAATATGGCGGCAAAAGTA

Function

NR:

description
protein-glutamine gamma-glutamyltransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974703.1 True 2477 mRNA 0.52 14 27332548 27342006

Neighbor

gene id symbol gene type direction distance location
LOC110532131 aars coding downstream 11422 27316672 ~ 27321126 (-)
LOC110532124 LOC104966864 coding downstream 32689 27226163 ~ 27299859 (-)
LOC110520098 LOC106573710 coding downstream 117297 27205911 ~ 27215251 (-)
LOC118966748 NA coding downstream 189135 27143360 ~ 27143413 (-)
LOC110520062 NA coding downstream 393224 26926298 ~ 26939324 (-)
LOC110520135 ar2bp coding upstream 31256 27373262 ~ 27375453 (-)
LOC110520144 rspry1 coding upstream 33834 27375840 ~ 27392581 (-)
LOC110520152 cpne2 coding upstream 63053 27405059 ~ 27445369 (-)
LOC110520192 nlrc5 coding upstream 105038 27447044 ~ 27467451 (-)
LOC110520201 NA coding upstream 143479 27485485 ~ 27486881 (-)
G27969 NA non-coding downstream 100018 27223487 ~ 27232530 (-)
G27481 NA non-coding downstream 195218 27137100 ~ 27137330 (-)
G27476 LOC106573708 non-coding downstream 197527 27132927 ~ 27135021 (-)
G27478 NA non-coding downstream 200619 27131682 ~ 27131929 (-)
G28024 NA non-coding upstream 9299 27351305 ~ 27351655 (-)
G28033 NA non-coding upstream 61848 27403854 ~ 27404723 (-)
G28074 NA non-coding upstream 163397 27505403 ~ 27506148 (-)
G28106 NA non-coding upstream 204520 27546526 ~ 27546794 (-)
G25117 zfpm1 other downstream 2050530 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 2051518 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 2381161 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 2393847 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 2467714 24853824 ~ 24865158 (-)
LOC110520292 gnao1 other upstream 294082 27631001 ~ 27781768 (-)
G28870 NA other upstream 715437 28057443 ~ 28066305 (-)
G29355 NA other upstream 1361881 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 1938270 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 3789887 31131151 ~ 31132900 (-)

Expression


Co-expression Network