LOC110520144 (rspry1)


Basic Information

Item Value
gene id LOC110520144
gene name rspry1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27375840 ~ 27392581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597248.2
ggggtagctGACGCTACGGAACTAGGCTAGTTAGTTATCAGTACAGCCGTACACAAAATTAAATAAATGGGTTTGAGGGCGTTATACCCGATTGAATCAATAAAGAGCAGATTAAATGGGATTGTTAACCATCTAACGTTACACTAACTAGTTTGTGCTTGCAAGCTCCCCTTTTTGTttagttagctacctagctagcttggCTAACGGGTAGACAGCTAGTTTAAAGTAAAAGCGTTTCTCGTAAagcttttcaggggcctattcaTCTTCATGATTGTCGTAACTCGTTAACTATCAGAGGACATTACCAGCTATTTTGCAAGTTGCCATCCATCTGCAGAGTAGTAGCACCATGATTGACGTCCCCACCCGGATCGTCATGAGACGCCTCCACGAGTGCTCCAAATGATATGATAGTAGCTTCTTGGATTGCATTCTGTGCTAGCAGGAGCCTTGAACAGGTTCTACTGCTCTCTTTGGAGCAGCAACATTCACTACGGGTTTGGAAAAGCCTCGGGACAACCAGAACCATGGGAAACAGCTGTGTTTGTAGAGAAGACAGTGATGTGGATGATGGATCGGCAACTCGCGGGCAGCTCAGGCGAGTTGATCACACCGCTGCTGATCACCCGGAGGCACGAAGCAGTCGGCCCCGGGACCCAGTCAGACCGCCGCGCCGTGGACGGGGACCCCATGAACCTCGCCGGAAGAAACAAAATGTGGACGGGCTGGTGCTGGACACACTTGCTGTCATCAGGACTCTAGTTGACAATGACCAAGAGCCTCCCTACTCCATGATCACGCTGCATGAGATGGCAGAAACGGATGACGGCTGGTTGGAGGTGGTCCAGTCTCTGATTCGGGTGATACCACTGGACGACCCATTGGGACCAGCTGTGATCACCCTGCTGCTTGACgagtgcccactgcccacaaaaGACGCTCTACAGAAGCTGTCCGGGATGCTGAGCCTGAGTTCCACTGTGGCCCGCCAGGATGCTGTCATCCCTTCCAAGCACcgcaacactacagctgtactaGGCTGCCTGGCTGAGAAACTGGCTGGTCCAGCGAGCATTGGACTCCTGAGCCCTGGAACCCTGGAGTACCTGCTGGAGAGCCTGAGTTCTGAGGCACATCCTACTGTTATGCTCTTTGCCCTCATAGCCTTGGAGAAGTTCTCACAGACCAGTGAGAACAAGCTAACGGTGTCCGAGTCATGTATAGGTGACCGGCTGGGGATTCTGGAATCGTGGGCTGACCACACAGACTACCTGAAGCGCCAAGTCGGCTTCTGTTCACAATGGAGCCTGGATAACCTCTtcctgAAAGATGGTCGTCAGTTCACCTATGAGAAGGTGAACCTGAGCAACATCAATGCCATGCTGAACAGCAATGACGTCAGCGAGTATCTTAAGATCTCTCCTAGTGGACTCGAGGCGCGCTGCGACGCGTCCTCCTTCGAGAGTGTCCGCTGTACCTTCTGTGTGGACTCAGGTGTGTGGTACTATGAGGTCACTGTGGTCACCTCAGGGGTCATGCAGATTGGCTGGGCCACCAAGGATAGCAAGTTCCTCAACCATgagggCTATGGGATAGGAGATGATGAATATTCATGTGCATATGATGGCTGCAGGCAGCTAATCTGGTACAATGCTCGCAGTAAGCCACACTCCCACCCTTGCTGGAAAGAGGGAGATGTCATCGGTTTCCTACTGGACCTCGGTAAGAAGCAGATGCTTTTCTTCCTGAATGGACATGAACTCCCCCCAGAGAAGCAGGTGTTCTCCTCCGCAACGTCTGGCTTCTTTGCAGCAGCAAGTTTCATGTCCTACCAACAATGTGAGTTTAACTTTGGGGCGAAGCCCTTCCGCCACCCCCCATCTGTTAAATTCAGCACCTTCAATGACTTTGCCTCGCTGGCGTCTGATGAGAAGATTATCCTTCCCAGACACCGGCGCCTGGCTCTGCTGAAGCAGGTGAGCATCAGAGACAACTGCTGCACCCTCTGTTGTGACCAGATGGCCGATACGGAGCTGAGACCCTGTGGACACAGTGGGATGTGTATGGAGTGTGCCTTACAGTTGGAGACATGCCCACTGTGTCGCCAGGACATTCAGACACGTGTCAGACTCATCTCACACGTGTCCTGACACTTCGCCTCCAAACCAGGACATGAACactcctccccaaccctcccctcctccaATCCCAACCAATAGGACAATGGGGCTGTGCTAGGATTTGTGATCGGACACTGGGCCTAATTTGAGGAGGGAGTGGTGGGACCTGACGAAGACCCCCAGGAGAGCGACTGTAGGGAGAATAGAACAAGGAGGGGGAACCTTTCTTTTATCTGCACTCCATGGAGCGTTCTCTCTGTGAGGAGATGGGCCCCTCACCAGTCTGAGAGCAAGAAAGtgctgagagagtgagagggcagGAAGGCAATTTTGAGATATTAGCAGGCAGCAGCATTTCCAGAATTGCCTCATCAATCTTAATGTCATAAACTCACACAGTATCTGCACATGGATCTGCCTAATGTTACCTCAGGCTCTGGTCAATGTGTCCTGTGTATCTCTGCTCAAACGTTTTAAATGTATCTGTGATTCTCTTGTTTTCTGACTAAACGTAAaggcacaacaacaaaaagactATGTTAACTCCCTGCTCAAACATACAATACCAACTGAGCACAGATTTGTCTAttactctccatctctcgctctctcctttacTTGAAGCATTTCTGAGTTGATTGAATAATCATTCTGTTATAAATGAGATTGCAAAATTAACAGAGGAACTCTGATTCAAAAAGTATCATATTTGTGTACGTACAATTAAAACTAAATTGAGTTGATTGAAATTAAGTTATTGAAATCACAGTTAACTGGGATAGTTTTGATTCCCAGGATAGCCTGAAGTGGTTGTGGAAAATCATTCAGAATCAGAGGATGTTGTCAGAAGATATCACACATCTCTGTTAGTATGAATGACTACATTTGGTCACAGTGCAAATTTGGAGGGCCAATTGTCTCCATTCCAGAAAATTAGTCATTGAAGAAAAAGTGAAATTGTATCTTAACGTCTTAATGGAGTAGCCCCAGGGGTCCCAAAGATGTGATTTACTGATTGATCATTGTTTTCTGAATTGTGATATTTGTAATAATAAATATtcaagtaactgtccagtgtttccagatttctatgaaatatgacctataattaaaAACAATGAGTGAAATAGTTTGCCTTCCAAAAAATGTTAAGTAATGATCTTAAAAAGCAGCTTTTTTTTGTGTTGGAATGTTGTGGAAgtgccccaacaacagaatggtgtgggtgtaaaCCGGTCATTAAAACTATTCATGGGAGCTCATCCCACAGAAA
>XM_036974750.1
ggggtagctGACGCTACGGAACTAGGCTAGTTAGTTATCAGTACAGCCGTACACAAAATTAAATAAATGGGTTTGAGGGCGTTATACCCGATTGAATCAATAAAGAGCAGATTAAATGGGATTGTTAACCATCTAACGTTACACTAACTAGTTTGTGCTTGCAAGCTCCCCTTTTTGTttagttagctacctagctagcttggCTAACGGGTAGACAGCTAGTTTAAAGTAAAAGCGTTTCTCGTAAagcttttcaggggcctattcaTCTTCATGATTGTCGTAACTCGTTAACTATCAGAGGACATTACCAGCTATTTTGCAAGTTGCCATCCATCTGCAGAGTAGTAGCACCATGATTGACGTCCCCACCCGGATCGTCATGAGACGCCTCCACGAGTGCTCCAAATGATATGATAGTAGCTTCTTGGATTGCATTCTGTGCTAGCAGGAGCCTTGAACAGGTTCTACTGCTCTCTTTGGAGCAGCAACATTCACTACGGGTTTGGAAAAGCCTCGGGACAACCAGAACCATGGGAAACAGCTGTGTTTGTAGAGAAGACAGTGATGTGGATGATGGATCGGCAACTCGCGGGCAGCTCAGGCGAGTTGATCACACCGCTGCTGATCACCCGGAGGCACGAAGCAGTCGGCCCCGGGACCCAGTCAGACCGCCGCGCCGTGGACGGGGACCCCATGAACCTCGCCGGAAGAAACAAAATGTGGACGGGCTGGTGCTGGACACACTTGCTGTCATCAGGACTCTAGTTGACAATGACCAAGAGCCTCCCTACTCCATGATCACGCTGCATGAGATGGCAGAAACGGATGACGGCTGGTTGGAGGTGGTCCAGTCTCTGATTCGGGTGATACCACTGGACGACCCATTGGGACCAGCTGTGATCACCCTGCTGCTTGACgagtgcccactgcccacaaaaGACGCTCTACAGAAGCTGTCCGGGATGCTGAGCCTGAGTTCCACTGTGGCCCGCCAGGATGCTGTCATCCCTTCCAAGCACcgcaacactacagctgtactaGGCTGCCTGGCTGAGAAACTGGCTGGTCCAGCGAGCATTGGACTCCTGAGCCCTGGAACCCTGGAGTACCTGCTGGAGAGCCTGAGTTCTGAGGCACATCCTACTGTTATGCTCTTTGCCCTCATAGCCTTGGAGAAGTTCTCACAGACCAGTGACCGGCTGGGGATTCTGGAATCGTGGGCTGACCACACAGACTACCTGAAGCGCCAAGTCGGCTTCTGTTCACAATGGAGCCTGGATAACCTCTtcctgAAAGATGGTCGTCAGTTCACCTATGAGAAGGTGAACCTGAGCAACATCAATGCCATGCTGAACAGCAATGACGTCAGCGAGTATCTTAAGATCTCTCCTAGTGGACTCGAGGCGCGCTGCGACGCGTCCTCCTTCGAGAGTGTCCGCTGTACCTTCTGTGTGGACTCAGGTGTGTGGTACTATGAGGTCACTGTGGTCACCTCAGGGGTCATGCAGATTGGCTGGGCCACCAAGGATAGCAAGTTCCTCAACCATgagggCTATGGGATAGGAGATGATGAATATTCATGTGCATATGATGGCTGCAGGCAGCTAATCTGGTACAATGCTCGCAGTAAGCCACACTCCCACCCTTGCTGGAAAGAGGGAGATGTCATCGGTTTCCTACTGGACCTCGGTAAGAAGCAGATGCTTTTCTTCCTGAATGGACATGAACTCCCCCCAGAGAAGCAGGTGTTCTCCTCCGCAACGTCTGGCTTCTTTGCAGCAGCAAGTTTCATGTCCTACCAACAATGTGAGTTTAACTTTGGGGCGAAGCCCTTCCGCCACCCCCCATCTGTTAAATTCAGCACCTTCAATGACTTTGCCTCGCTGGCGTCTGATGAGAAGATTATCCTTCCCAGACACCGGCGCCTGGCTCTGCTGAAGCAGGTGAGCATCAGAGACAACTGCTGCACCCTCTGTTGTGACCAGATGGCCGATACGGAGCTGAGACCCTGTGGACACAGTGGGATGTGTATGGAGTGTGCCTTACAGTTGGAGACATGCCCACTGTGTCGCCAGGACATTCAGACACGTGTCAGACTCATCTCACACGTGTCCTGACACTTCGCCTCCAAACCAGGACATGAACactcctccccaaccctcccctcctccaATCCCAACCAATAGGACAATGGGGCTGTGCTAGGATTTGTGATCGGACACTGGGCCTAATTTGAGGAGGGAGTGGTGGGACCTGACGAAGACCCCCAGGAGAGCGACTGTAGGGAGAATAGAACAAGGAGGGGGAACCTTTCTTTTATCTGCACTCCATGGAGCGTTCTCTCTGTGAGGAGATGGGCCCCTCACCAGTCTGAGAGCAAGAAAGtgctgagagagtgagagggcagGAAGGCAATTTTGAGATATTAGCAGGCAGCAGCATTTCCAGAATTGCCTCATCAATCTTAATGTCATAAACTCACACAGTATCTGCACATGGATCTGCCTAATGTTACCTCAGGCTCTGGTCAATGTGTCCTGTGTATCTCTGCTCAAACGTTTTAAATGTATCTGTGATTCTCTTGTTTTCTGACTAAACGTAAaggcacaacaacaaaaagactATGTTAACTCCCTGCTCAAACATACAATACCAACTGAGCACAGATTTGTCTAttactctccatctctcgctctctcctttacTTGAAGCATTTCTGAGTTGATTGAATAATCATTCTGTTATAAATGAGATTGCAAAATTAACAGAGGAACTCTGATTCAAAAAGTATCATATTTGTGTACGTACAATTAAAACTAAATTGAGTTGATTGAAATTAAGTTATTGAAATCACAGTTAACTGGGATAGTTTTGATTCCCAGGATAGCCTGAAGTGGTTGTGGAAAATCATTCAGAATCAGAGGATGTTGTCAGAAGATATCACACATCTCTGTTAGTATGAATGACTACATTTGGTCACAGTGCAAATTTGGAGGGCCAATTGTCTCCATTCCAGAAAATTAGTCATTGAAGAAAAAGTGAAATTGTATCTTAACGTCTTAATGGAGTAGCCCCAGGGGTCCCAAAGATGTGATTTACTGATTGATCATTGTTTTCTGAATTGTGATATTTGTAATAATAAATATtcaagtaactgtccagtgtttccagatttctatgaaatatgacctataattaaaAACAATGAGTGAAATAGTTTGCCTTCCAAAAAATGTTAAGTAATGATCTTAAAAAGCAGCTTTTTTTTGTGTTGGAATGTTGTGGAAgtgccccaacaacagaatggtgtgggtgtaaaCCGGTCATTAAAACTATTCATGGGAGCTCATCCCACAGAAA

Function

symbol description
rspry1 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to be active in cytoplasm. Orthologous to human RSPRY1 (ring finger and SPRY domain containing 1).

NR:

description
RING finger and SPRY domain-containing protein 1-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23332 RSPRY1; RING finger and SPRY domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597248.2 False 3399 mRNA 0.48 15 27375840 27392581
XM_036974750.1 True 3363 mRNA 0.48 15 27375840 27392581

Neighbor

gene id symbol gene type direction distance location
LOC110520135 ar2bp coding downstream 387 27373262 ~ 27375453 (-)
LOC110520123 LOC106573712 coding downstream 33834 27332548 ~ 27342006 (-)
LOC110532131 aars coding downstream 54714 27316672 ~ 27321126 (-)
LOC110532124 LOC104966864 coding downstream 75981 27226163 ~ 27299859 (-)
LOC110520098 LOC106573710 coding downstream 160589 27205911 ~ 27215251 (-)
LOC110520152 cpne2 coding upstream 12478 27405059 ~ 27445369 (-)
LOC110520192 nlrc5 coding upstream 54463 27447044 ~ 27467451 (-)
LOC110520201 NA coding upstream 92904 27485485 ~ 27486881 (-)
LOC110520206 herpud1 coding upstream 97963 27490544 ~ 27498055 (-)
LOC110520211 nup93 coding upstream 115020 27507601 ~ 27544963 (-)
G28024 NA non-coding downstream 24185 27351305 ~ 27351655 (-)
G27969 NA non-coding downstream 143310 27223487 ~ 27232530 (-)
G27481 NA non-coding downstream 238510 27137100 ~ 27137330 (-)
G27476 LOC106573708 non-coding downstream 240819 27132927 ~ 27135021 (-)
G28033 NA non-coding upstream 11273 27403854 ~ 27404723 (-)
G28074 NA non-coding upstream 112822 27505403 ~ 27506148 (-)
G28106 NA non-coding upstream 153945 27546526 ~ 27546794 (-)
mt2 NA non-coding upstream 158749 27551330 ~ 27552061 (-)
G25117 zfpm1 other downstream 2093822 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 2094810 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 2424453 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 2437139 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 2511006 24853824 ~ 24865158 (-)
LOC110520292 gnao1 other upstream 243507 27631001 ~ 27781768 (-)
G28870 NA other upstream 664862 28057443 ~ 28066305 (-)
G29355 NA other upstream 1311306 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 1887695 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 3739312 31131151 ~ 31132900 (-)

Expression


Co-expression Network