LOC110520152 (cpne2)


Basic Information

Item Value
gene id LOC110520152
gene name cpne2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27405059 ~ 27445369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974738.1
GCCTTAGGTGTGAAGAGTGTTTTAGTCACTCCAGTGACTGTAATGTTGGATGGACTGAACCTGAGGGGCTGTTTAGGGATATGGGGCTGTGGGAGGGCTGACAATCCTGCCGGCATGGCCTACACGCTAGGCACGGGGCCCGACTCTGGGCCAACCGTGAGTCCCCAGCACTGCATCACCAGGGTGGAGCTGTCTGTGTGCTGCGGCAACCTGCTGGACAGAGATGTGACCTCCAAGTCAGACCCCTTCTGTGTGCTATTCAATGAGGTGGACAGCAGCTGGGTTGAGATTGGCCGAACAGAGACTGCAGTGAATAACCTGAATCCAGTGTTTGGGGTGAAGTTTAAGGTGGACTACCATTTTGAGGAGGTCCAGAAGCTCAAGTTTGCCCTGTTTGATGAGGACAAGTGCAGCAGCCAGCTGTATGAGCATGACTTCCTGGGAGAGTACATCTGTACACTGGGGGTGATTGTGTCCAATAAGAAACTTCACCGACCACTAACCTTGGCCAATAGCAAGCCAGCTGGGAAGGGAACCATCACAATAACTGCGCTGGAACTGTCAGACAATAGAATAATCACATTGACATTGTGTGGGAGAAAACTTGACAAGAAGGATTTCTTTGGTAAATCAGACCCCTACCTAGAGTTCCATAAGCAAGGAGATGATGGGAAATGGATGTTAGTCCACAGGACAGAGGTGATAAAGAACACTCTGGACCCGGTGTGGAAGCCCTTCACAGTACCACTCATCTCCCTCTGTAACGGGGACGTGGACAGGAGCATCAAGGTACTGTGCTATGATTACGACAACGATGGAGGCCATGACTTCATTGGAGAGTTTCAGACCACTGTCAACAAGATGAGTGAAGCCCAAAATTCACTGGAGATCGAATTTGAATGCATTAATCccaagaaacagaagaagaaaaagagcTACAGAAACTCTGGAATCATCATTCTGAAGTCATGCAAGGTTGAAAGGGACTATACCTTCCTGGACTATATTTTAGGTGGATGCCAAATCATGTTCACTGTTGGCATTGATTTCACAGCGTCTAATGGGAACCCTCGGGAGGCCTCCTCTCTTCACTTCATCAACCCTCTGGGCAGCAATGAGTACTTGTCCGCCATCCTGGCTGTGGGCCAGATCATCCAGGACTATGACACTGACAAAATGTTTCCTGCTCTGGGATTTGGGGCTCAACTCCCTCCAGACTGGAAAGTGTCTCATGAATTTGCCATCAACTTTGACCCCACCAATCCCTTCTGCCAAGGCGTGGAGGGGATTGCCCAGGCctactctgtctgcctgcctcacATCCGTTTCTACGGCCCCACCAACTTCTCCCCCATCATCACCCATGTGGCCCGCTTTGCCACCCAGGCCCTTCAACAGGAGACTGCTGCGCAATACTTCACTCTGCTGATCATCACAGATGGGGTGATCAGTGACATGGATGAGACCCGCCACGCCATTGTTCAGGCAGCCAAGCTCCCCATGTCAATCATCATTATTGGAGTGGGCAATGCAGACTTTGCTGCCATGGAGTTCCTGGATGGGGACAGCAGCGTGTTACGCTCCTACACAGGAGAGGAAGCAGTCAGAGACATCGTGCAGTTTGTTCCCTTCAGGGACTTCCGAAATGCTCCAAAGGAAACTTTAGCCAAATCAGTATTGGCTGAGCTGCCGCAACAGGTCACACAGTACTTCAAACAGAGGAACCTGTCGCCTAGCAACACAGCATCGGAGTGAAATCCCAAGGCCTTGGTTCATCATCATGCATGTTGCAAATGTCTATTCACTGTTTACAAGAAAAACACAATGAAAAAGTGCATGAAAAGGTTTTTTAATATGTATTCATCTGATTTTTTAACCTTATCTGAAAGCAAGACTTTGTGGAAGAAAAATACAGTATGTGTCAAAGAATACTACTTTGCAGTCCCCTGAAGAGAACATTTGAAATGCATACTCTACCCTGAATGTAAATTTATACAATGTTCTGTTTTCAAAAGAAAATGTTTATGAAAAGTTTTTCCTGTACCTTTTATGCAGTGAATTGTAATTTGTTGTACTTGTACTGTACCTTGAAGACGTTATTGATTTTATAATGTTCACCATGTATTCGTTACCACTCAGGTCAATAAACATACAGAAATGTCA
>XM_021597260.2
CGGCTAGAGACTGTCACAGCGCAGAATGACCTGCCCCCGTGGCGAACTACAACAATTTGTTTTCCCCTGATGATATTTTTTGACATCATGAAAATAACTTCAATTTGTGCATAGGGAGAAAAGTGTTTGAGCTATCAAGAAATAAGGAATCTTCAGAGAAGAGAAGTGGGTAGAGTAGTACTTAAATCACGTTTACTAAGGCTGTGGGAGGGCTGACAATCCTGCCGGCATGGCCTACACGCTAGGCACGGGGCCCGACTCTGGGCCAACCGTGAGTCCCCAGCACTGCATCACCAGGGTGGAGCTGTCTGTGTGCTGCGGCAACCTGCTGGACAGAGATGTGACCTCCAAGTCAGACCCCTTCTGTGTGCTATTCAATGAGGTGGACAGCAGCTGGGTTGAGATTGGCCGAACAGAGACTGCAGTGAATAACCTGAATCCAGTGTTTGGGGTGAAGTTTAAGGTGGACTACCATTTTGAGGAGGTCCAGAAGCTCAAGTTTGCCCTGTTTGATGAGGACAAGTGCAGCAGCCAGCTGTATGAGCATGACTTCCTGGGAGAGTACATCTGTACACTGGGGGTGATTGTGTCCAATAAGAAACTTCACCGACCACTAACCTTGGCCAATAGCAAGCCAGCTGGGAAGGGAACCATCACAATAACTGCGCTGGAACTGTCAGACAATAGAATAATCACATTGACATTGTGTGGGAGAAAACTTGACAAGAAGGATTTCTTTGGTAAATCAGACCCCTACCTAGAGTTCCATAAGCAAGGAGATGATGGGAAATGGATGTTAGTCCACAGGACAGAGGTGATAAAGAACACTCTGGACCCGGTGTGGAAGCCCTTCACAGTACCACTCATCTCCCTCTGTAACGGGGACGTGGACAGGAGCATCAAGGTACTGTGCTATGATTACGACAACGATGGAGGCCATGACTTCATTGGAGAGTTTCAGACCACTGTCAACAAGATGAGTGAAGCCCAAAATTCACTGGAGATCGAATTTGAATGCATTAATCccaagaaacagaagaagaaaaagagcTACAGAAACTCTGGAATCATCATTCTGAAGTCATGCAAGGTTGAAAGGGACTATACCTTCCTGGACTATATTTTAGGTGGATGCCAAATCATGTTCACTGTTGGCATTGATTTCACAGCGTCTAATGGGAACCCTCGGGAGGCCTCCTCTCTTCACTTCATCAACCCTCTGGGCAGCAATGAGTACTTGTCCGCCATCCTGGCTGTGGGCCAGATCATCCAGGACTATGACACTGACAAAATGTTTCCTGCTCTGGGATTTGGGGCTCAACTCCCTCCAGACTGGAAAGTGTCTCATGAATTTGCCATCAACTTTGACCCCACCAATCCCTTCTGCCAAGGCGTGGAGGGGATTGCCCAGGCctactctgtctgcctgcctcacATCCGTTTCTACGGCCCCACCAACTTCTCCCCCATCATCACCCATGTGGCCCGCTTTGCCACCCAGGCCCTTCAACAGGAGACTGCTGCGCAATACTTCACTCTGCTGATCATCACAGATGGGGTGATCAGTGACATGGATGAGACCCGCCACGCCATTGTTCAGGCAGCCAAGCTCCCCATGTCAATCATCATTATTGGAGTGGGCAATGCAGACTTTGCTGCCATGGAGTTCCTGGATGGGGACAGCAGCGTGTTACGCTCCTACACAGGAGAGGAAGCAGTCAGAGACATCGTGCAGTTTGTTCCCTTCAGGGACTTCCGAAATGCTCCAAAGGAAACTTTAGCCAAATCAGTATTGGCTGAGCTGCCGCAACAGGTCACACAGTACTTCAAACAGAGGAACCTGTCGCCTAGCAACACAGCATCGGAGTGAAATCCCAAGGCCTTGGTTCATCATCATGCATGTTGCAAATGTCTATTCACTGTTTACAAGAAAAACACAATGAAAAAGTGCATGAAAAGGTTTTTTAATATGTATTCATCTGATTTTTTAACCTTATCTGAAAGCAAGACTTTGTGGAAGAAAAATACAGTATGTGTCAAAGAATACTACTTTGCAGTCCCCTGAAGAGAACATTTGAAATGCATACTCTACCCTGAATGTAAATTTATACAATGTTCTGTTTTCAAAAGAAAATGTTTATGAAAAGTTTTTCCTGTACCTTTTATGCAGTGAATTGTAATTTGTTGTACTTGTACTGTACCTTGAAGACGTTATTGATTTTATAATGTTCACCATGTATTCGTTACCACTCAGGTCAATAAACATACAGAAATGTCA
>XR_005050752.1
TTTGCCTTAGGTGTGAAGAGTGTTTTAGTCACTCCAGTGACTGTAATGTTGGATGGACTGAACCTGAGGGGCTGTTTAGGGATATGGGGCTGTGGGAGGGCTGACAATCCTGCCGGCATGGCCTACACGCTAGGCACGGGGCCCGACTCTGGGCCAACCGTGAGTCCCCAGCACTGCATCACCAGGGTGGAGCTGTCTGTGTGCTGCGGCAACCTGCTGGACAGAGATGTGACCTCCAAGTCAGACCCCTTCTGTGTGCTATTCAATGAGGTGGACAGCAGCTGGGTTGAGATTGGCCGAACAGAGACTGCAGTGAATAACCTGAATCCAGTGTTTGGGGTGAAGTTTAAGGTGGACTACCATTTTGAGGAGGTCCAGAAGCTCAAGTTTGCCCTGTTTGATGAGGACAAGTGCAGCAGCCAGCTGTATGAGCATGACTTCCTGGGAGAGTACATCTGTACACTGGGGGTGATTGTGTCCAATAAGAAACTTCACCGACCACTAACCTTGGCCAATAGCAAGCCAGCTGGGAAGGGAACCATCACAATAACTGCGCTGGAACTGTCAGACAATAGAATAATCACATTGACATTGTGTGGGAGAAAACTTGACAAGAAGGATTTCTTTGGTAAATCAGACCCCTACCTAGAGTTCCATAAGCAAGGAGATGATGGGAAATGGATGTTAGTCCACAGGACAGAGGTGATAAAGAACACTCTGGACCCGGTGTGGAAGCCCTTCACAGTACCACTCATCTCCCTCTGTAACGGGGACGTGGACAGGAGCATCAAGGTACTGTGCTATGATTACGACAACGATGGAGGCCATGACTTCATTGGAGAGTTTCAGACCACTGTCAACAAGATGAGTGAAGCCCAAAATTCACTGGAGATCGAATTTGAATGCATTAATCccaagaaacagaagaagaaaaagagcTACAGAAACTCTGGAATCATCATTCTGAAGTCATGCAAGGTTGAAAGGGACTATACCTTCCTGGACTATATTTTAGGTGGATGCCAAATCATGTTCACTGTTGGCATTGATTTCACAGCGTCTAATGGGAACCCTCGGGAGGCCTCCTCTCTTCACTTCATCAACCCTCTGGGCAGCAATGAGTACTTGTCCGCCATCCTGGCTGTGGGCCAGATCATCCAGGACTATGACACTGACAAAATGTTTCCTGCTCTGGGATTTGGGGCTCAACTCCCTCCAGACTGGAAAGTGTCTCATGAATTTGCCATCAACTTTGACCCCACCAATCCCTTCTGCCAAGGCGTGGAGGGGATTGCCCAGGCctactctgtctgcctgcctcacATCCGTTTCTACGGCCCCACCAACTTCTCCCCCATCATCACCCATGTGGCCCGCTTTGCCACCCAGGCCCTTCAACAGGAGACTGCTGCGGGCCAGATGTGGTAGCACATGCTGATCATGTGATGATGGTTTGCCAACAGTAACCCAGAGCTCCTGAAGTCACAGAACCTTTAAACATTCACAAGGTTGAAGAGGTATATAGGGTACTAGGGGGTAACTGCCCCCAGCCCCTATAATTCACATTAAGACCACAAGATGTCaccaaatatttttttcaacactttCCTTGGCTGCCACTGCTCTTGCTCAACAACCAAAAATCTTCTGTGTCATCACAACTTTTGGAGATATTTCAACAAAACGATTTTGTGTCACAGGTGGGGACATGGATTAGGTGTGAGCGGTGCAGGAGATGGACTCATGAGTTGGGCTCCAATTTGACTGGGGATAGCTTGTTTTGTGACCTATGTACAAATTAGAATTGTGCAATGGCAGAGTATAAGAGAGTTGCCTCCAATGTTACGCTGAACTAATTAGTTAAGTTATTATTATGAATTATTCAATTCCAATGTTATTTAATGTCATTAGTTATATTCCATTCCAATATTATATTCTAATTCATATTTTTTGAATGAATTAAAAACAACTAGTGAAACCCTTTTGCTCCTGAATGTCATTTTAAAGACGGCTGGGATTGAACAGGTTACCCAGGTACTTTTTTCAAAAAGCCCCTTTTCTAAAACAACATTTCATGAAATTACAAAAAAAGTGTAAACTGTAGCCATTTATTTCCCTTTATAGTTTATTTGCCTAAGTATGACCTTCATCCACATACCAATTTCTTTCCCAAATGTTGCTTTTTTTGTGTCAGCAATTAGACATTGCTGGTTACTCCCAAGTACCCTACCACTGAGCCATTACATGACGTCTTCTTGTTCCAGGTAGAGGTTTTTATAGAAAGATTCCGTATCCATGGAAACTTACCCTCACCCTTGCTGAAGCAACTCAAAAAACATATTTAACAATATTGGAAATAGCTGGAGTGATGTCTACATCATCAACTCTATACGCAACCTATTCAAACACTTTGTACTCATGCCTGGTTTTACAACAATAGTTCTCTGTATTCTGCCTCTCATGCATAATGAGACATAACAGGCTCTGGCTTATTGGTAAAGTCATAACAGTTACAGAGTAAAGAGTCCATCTCATTGGACAGCCTTCCCTGTACGAATAATTGTTTTCTGTGTCCATCAGACAGGCTTGTTTCCCTCAGAGCTGCTCAGCATGCTGTAATTAGAAAATAATGAGTCCCCTTACTGCTGTTCACACGGGCCTATCAGCAagctgtgtgttttc

Function

symbol description
cpne2 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE2 (copine 2).

NR:

description
PREDICTED: copine-2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974738.1 False 2163 mRNA 0.47 16 27405059 27443073
XM_021597260.2 False 2278 mRNA 0.46 16 27405059 27445369
XR_005050752.1 True 2682 mRNA 0.45 16 27425752 27443076

Neighbor

gene id symbol gene type direction distance location
LOC110520144 rspry1 coding downstream 12478 27375840 ~ 27392581 (-)
LOC110520135 ar2bp coding downstream 29606 27373262 ~ 27375453 (-)
LOC110520123 LOC106573712 coding downstream 63053 27332548 ~ 27342006 (-)
LOC110532131 aars coding downstream 83933 27316672 ~ 27321126 (-)
LOC110532124 LOC104966864 coding downstream 105200 27226163 ~ 27299859 (-)
LOC110520192 nlrc5 coding upstream 1675 27447044 ~ 27467451 (-)
LOC110520201 NA coding upstream 40116 27485485 ~ 27486881 (-)
LOC110520206 herpud1 coding upstream 45175 27490544 ~ 27498055 (-)
LOC110520211 nup93 coding upstream 62232 27507601 ~ 27544963 (-)
mt2 NA coding upstream 105966 27551330 ~ 27552061 (-)
G28033 NA non-coding downstream 336 27403854 ~ 27404723 (-)
G28024 NA non-coding downstream 53404 27351305 ~ 27351655 (-)
G27969 NA non-coding downstream 172529 27223487 ~ 27232530 (-)
G27481 NA non-coding downstream 267729 27137100 ~ 27137330 (-)
G28074 NA non-coding upstream 60034 27505403 ~ 27506148 (-)
G28106 NA non-coding upstream 101157 27546526 ~ 27546794 (-)
G28112 NA non-coding upstream 116576 27561945 ~ 27562365 (-)
G25117 zfpm1 other downstream 2123041 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 2124029 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 2453672 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 2466358 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 2540225 24853824 ~ 24865158 (-)
LOC110520292 gnao1 other upstream 190719 27631001 ~ 27781768 (-)
G28870 NA other upstream 612074 28057443 ~ 28066305 (-)
G29355 NA other upstream 1258518 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 1834907 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 3686524 31131151 ~ 31132900 (-)

Expression


Co-expression Network